zgc:172182 (LOC106581782)


Basic Information

Item Value
gene id zgc:172182
gene name LOC106581782
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15497172 ~ 15501749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579072.2
GATTCCCTTTTCCATTTCCCTTGTGCATTTGTGTCGAGCTGTATAATTCCGTGGCTCATGTCTTTTGGCACAAGCCAATTAGCCAAATAAATACATAGAAAATCAACTACGTTATTATAAATGTAACAATTCTGGTCAAACATGATTAATGTTGGTGTGTGCCACCGCTCACTAAGAAATGGTGCGAGGAAATGTAAAGATGGGAGGGGAGAAAATGGTTTCGGGTAGGCAACTGAAATGACAGTTGCCAGTAGCAACAGCTGAAACTTTGCGGTTCTCCGACAAGACCCGTTGTAAAAGACTCGTTGAAGTAGTAGCGTTAAGTGAACGACACTGATTTACGCATCTCGAAGCTCGAATACCCTTTTCTAAAGGCAGTCGACATGGCATCACCCCACAGAAGTCCAAAAGATTTAAGGAAGATGATAAGAGAGACCAAACAGGACATGGACGATGTCCACAAGTCTTTGGAGAAACTGCGTGGCCTTTCCCTGGAAGAGAGGACGGAGTCAGGGATGCTGCGGTCAAGGATAGACGAGCAATCGAGTTTGATTTGCATTTTGAAACAAAGAGCAGACGACATGCTTCTTCGTTGTCAGGCTCTGGAGAGGATCAACTCTGAGTTAGAAGACCTGAGAGCAGACGTACAGACCGAACTTGACAAGGAAAAGAAGAGATCCATGCAGTTAGAGCAAAGGTTTATGGATCTGGCAGCCAACCATCAGGAGCTGATACATTTCAAGGACGAGTACAAAAGACAGAATGCCAAACTAAAACAGGAGAATGAACGACTTCAGGAAGAAAACAAGAAACTTTTCTCTAAAGACTTACAAGACAAAGAAGCAGTTGTTTTGAAACTAACACAAGAACTGAGAGACCTTGCAGAGCAACATAGAAGTCTTGATAATGAATATCAGGGAAAAACAACTGGGTTCAAGACCAAACTTAAAGGGCTCATGGATCTCCATCATACTAAGGAGGCGTCCTTACAAGGTGAATTGCATGATGCTCAAAGACAGCTGAGCAATGCAGTGGAGATGTGCACAGAACTTGATCAACAGCTTAAAAAAGCAAGAGAAAATGATTCATTGAAAGGGACAGAGATGCAGAAAAAAATGGAGGTCTTGGCCAAGGAAAAAGACAAATTCTTGGATCTCTCGATGCAAAGGGGGAAACTAATACAGGATAAACAGGTGGAAATCCAGCAGTTGGAGACAAAAAGGCAAGAGGTGGAAAAAAACAGGGCTGCTGCAGAAGAAAGGTTTGAAAGAGAGGCAGCTGTGGTGAACACTAATTTGAAAGTCAAAGAACTCCAGCATGCTCTTGATCAGTCTGTGAACACTTGCAACAAGCTGACGAAGGATTTTGAAGCCTATAAAAACCACAGCACCGACCTACTTGAAAAGGAAAAGGAGTTAAATGCCAAGCTGCGCCATATGATTGGCTAAgactacctcccattccatccacCCATTCACTGATGTAATAAGATAGGAGTATGAATTTGCTtctctcccaggcccacccatggctgtgcccatgcacagtcatgtgaaatccatagattagggcctgatgaattactttcaattgacagatttccttatatgaactgtaactcagtaaaatcgttgatattgttgcatgttgagtttatgtttttgttcagtgtatttacaTTGTGTGCACATGCTTCATGTGATAGAAATCTGAACATACTACCTGCGCTTTGAAAATTTGGATTAATTATAAtttcctgtggatatattgtTTTGAATTTATTCCTACATAATGACTAACCATGTAGACTAACTGGTAGAGAAAGTTCAAATGTAATTTTATCCAACATCCAGGCTTGTAGAGGTCCTGAGAGGACCATTTCAAACACAAACACTGAAATGTCCCAGACGGTGGATTTAGAAATTCTTCCGTTTGGTCCCCAGGCAAGTGTGGAGAGAGCGCCTGGGGCTCTGCTGAATGCTTTTAGGGTATTAAACCCTGGCTTAAGAGCTTGCAGAGCAGGTGCAGCAGCGTCAGAACCCAACATGGTGAATATGGCTGAAAGTTTAAAAGAGATGGTGCACTGTAACTTTTATAAGGAGGAGCCATGTGAAAATTCTGGCTTAGTTTACATCTCTATCACAAGAGGGCAGTacaggctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgctttTGACCATTTGAACATTGTTATTTATCAGGCTTGAACTTGAACATGTTGATGTTACCTGGCTAATTATTCTCATGATAAATttgcagttgaagtctgaagtttacatacaccttagccaaatgtatttaaactcagtttcccacaattcctgacatttaatcccagtaaaattccctgtcttaggtcagttagga

Function

NR:

description
coiled-coil domain-containing protein 89-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579072.2 True 2396 mRNA 0.42 7 15497172 15501749

Neighbor

gene id symbol gene type direction distance location
col28a2a LOC106581781 coding downstream 16658 15446052 ~ 15480514 (-)
bbs5 bbs5 coding downstream 63290 15424718 ~ 15433882 (-)
klhl41a LOC106586209 coding downstream 73370 15414900 ~ 15423802 (-)
LOC110501472 ppig coding downstream 95466 15394975 ~ 15401706 (-)
phgdh LOC106581777 coding downstream 118028 15365708 ~ 15379144 (-)
rdh1 LOC106581784 coding upstream 75322 15577071 ~ 15580959 (-)
dhrs9 LOC106581786 coding upstream 79570 15581319 ~ 15586397 (-)
nostrin nostrin coding upstream 112663 15614412 ~ 15618681 (-)
cers6 cers6 coding upstream 121708 15623457 ~ 15645629 (-)
b3galt1b LOC106581793 coding upstream 182674 15684423 ~ 15825221 (-)
G1781027 NA non-coding downstream 109202 15387764 ~ 15387970 (-)
G1781025 NA non-coding downstream 110721 15385933 ~ 15386451 (-)
G1781021 NA non-coding downstream 117487 15379432 ~ 15379685 (-)
G1780923 NA non-coding downstream 227043 15269756 ~ 15270129 (-)
G1780969 NA non-coding downstream 227582 15267522 ~ 15269590 (-)
G1781106 lrp2 non-coding upstream 32284 15534033 ~ 15538622 (-)
G1781137 lrp2 non-coding upstream 66180 15567503 ~ 15568534 (-)
G1781192 NA non-coding upstream 170474 15672223 ~ 15678026 (-)
G1781203 NA non-coding upstream 188040 15689789 ~ 15690167 (-)
G1781260 NA non-coding upstream 283272 15785021 ~ 15796656 (-)
G1778224 NA other downstream 2166677 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 2324193 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 2872478 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 3227058 12268217 ~ 12270114 (-)
G1777286 NA other downstream 3455550 12041108 ~ 12041622 (-)
LOC110501514 dapl1 other upstream 1555373 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 2367780 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 3673818 19175567 ~ 19179266 (-)

Expression


Co-expression Network