rdh1 (LOC106581784)


Basic Information

Item Value
gene id rdh1
gene name LOC106581784
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15577071 ~ 15580959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579073.2
TGCAGAATGGAGTGCaccttcaaaagaaaaacatgagTGACCTAGCCCTAGAGGCAATCAGATGAAAGAGGATGCATTTACCAGGACTATTATGGTCATGTAAACCATTGAAGGTCAATGGGACATATTACACAATCAAGCAGCACAGACCTTCGACACGGCTCCCATTCTGTAGCCCCTCGTAAAGTCGTCTTATAGCAGCCACTGGGAAGCACGTAGGTTGGACTGCGGAACAAACTCCATTCtgctttttttttatatactggATGAGAAAACACCAAACTTGCAAGTAGCCATGGTCTTTCCTGTGGTGTCTGAAGAGAATATTCTATTAGATTTTTTTCAGGCACACTTGGCTCTATCCTGCATACTCATTTCAGTTACAGCCATAGCCATCGCCTGGTTTATTAGAGATTCTTTCAAAGTTGAAGATTTTGACCAGAAACATGTCTTTATCACGGGCTGTGATAGCGGATTTGGAAATTTGGTGGCAAGGCAGCTTGACCAAAAGGGGTTTCATATAATAGCCGCATGTCTCACGGAGAAAGGTGAATCGGAATTGAAGGCTGCGGCCTCTCCCAGACTGAAGACAGTTCTGTTCAATGTTACCGACAGTCCGAGCATCGAGAGTGCGGTGGAGTTTGTGCGCGCGGAGGTTGGAGAGCGAGGTCTCTGGGGGCTGATCAACAACGCTGGGAGGTCCACACCTATAGGCCCCACTGAATGGATGCAGTTGGAGGACTTCAAGAAAGTTCTAGATGTGAATTTAATCGGTCTGATTGACGTGACCCTGAAGTTCCTCCCACTCTTAAAGAAGGCTCAAGGAAGGGTGGTCAATGTTGCCAGTATCCTGGGGAGGCTTGCCCTCAACGGAGGAGGCTACTGCCTATCTAAGTATGGTGTGGAGGCCTTCTCTGACAGCCTTAGGCGGGATATGCAGCATTTTGGTGTAAAAGTGAGTATCATTGAGCCTGGTTTCTTCAAGACGGGTGTGACCAGGCTGGACCTCATTGAAGCAGACCTGCAGAGACTGTGGAACCGTCTCCCCGAGGAGGTCAAGCACTCATATGGACCCAAATTCTTTGACGAATATGTAAAAGCTCAGGATTTCTCCATGGGTCTCCTGTGCAGTTCAGACATCTCCAAGGTGACCAGTTGCATGCAGCATGCTCTTACAGCCCGCCACCCACGGACCCGCTACTCACCTGGTTGGGATGCTAAGCTCATCTGGATCCCCCTGTCCTACCTCCCTGCGTTCATAGCAGACTTCACAGTCGCTGTTCTACTTCCTGTCCCCAAAGACGACAGAAAGAGCCATGCAAACCAAGTGGGTGTGGCAAACACATGAGCCACTGGACTCTTTCCTTTATCAATCACATCTATGATGCGTTTTAGATTGATTTCTATTCATGATTTGCATTTCAAGGATGTTGATACTGCACTGAATACAAATATAAGTGCAACATGtaaggtgttggtcccatgtttcatgggtTGAAATAAATCCCcaacattttccatacgcacaaaaaaagctt

Function

NR:

description
retinol dehydrogenase 3-like

GO: NA

KEGG:

id description
K00061 RDH5; 11-cis-retinol dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579073.2 True 1538 mRNA 0.47 6 15577071 15580959

Neighbor

gene id symbol gene type direction distance location
zgc:172182 LOC106581782 coding downstream 75322 15497172 ~ 15501749 (-)
col28a2a LOC106581781 coding downstream 96557 15446052 ~ 15480514 (-)
bbs5 bbs5 coding downstream 143189 15424718 ~ 15433882 (-)
klhl41a LOC106586209 coding downstream 153269 15414900 ~ 15423802 (-)
LOC110501472 ppig coding downstream 175365 15394975 ~ 15401706 (-)
dhrs9 LOC106581786 coding upstream 360 15581319 ~ 15586397 (-)
nostrin nostrin coding upstream 33453 15614412 ~ 15618681 (-)
cers6 cers6 coding upstream 42498 15623457 ~ 15645629 (-)
b3galt1b LOC106581793 coding upstream 103464 15684423 ~ 15825221 (-)
xirp2b LOC106586198 coding upstream 256060 15837019 ~ 15870045 (-)
G1781137 lrp2 non-coding downstream 8537 15567503 ~ 15568534 (-)
G1781106 lrp2 non-coding downstream 38449 15534033 ~ 15538622 (-)
G1781027 NA non-coding downstream 189101 15387764 ~ 15387970 (-)
G1781025 NA non-coding downstream 190620 15385933 ~ 15386451 (-)
G1781021 NA non-coding downstream 197386 15379432 ~ 15379685 (-)
G1781192 NA non-coding upstream 91264 15672223 ~ 15678026 (-)
G1781203 NA non-coding upstream 108830 15689789 ~ 15690167 (-)
G1781260 NA non-coding upstream 204062 15785021 ~ 15796656 (-)
G1781449 NA non-coding upstream 247540 15828499 ~ 15891725 (-)
G1781526 NA non-coding upstream 383045 15964004 ~ 15965985 (-)
G1778224 NA other downstream 2246576 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 2404092 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 2952377 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 3306957 12268217 ~ 12270114 (-)
LOC110501514 dapl1 other upstream 1476163 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 2288570 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 3594608 19175567 ~ 19179266 (-)
G1785753 NA other upstream 3740229 19321188 ~ 19321859 (-)

Expression


Co-expression Network