abcb11a (LOC106581787)


Basic Information

Item Value
gene id abcb11a
gene name LOC106581787
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15590720 ~ 15607266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579075.2
AATTTCCTCTCGTAGGAGGGATTCTTTATTGTTGGTAGTGACCAAATGGCTAGGATATCAGAGGAGTCCTTGACAGGAAGACAAAACAGACCCAGCGAGGACGTGCCTGTCAGAGTTAAAGCTACAAAAATGAAGGATCCTATTTACTTGAAAAAGGTCACTTCTCTACaggaggacacagacagagaataTTGCCGTACAAAAccagacagagaagaagaagAGAATGAAAAAGGAGAtggaaagaaaaaagaaaagctCTTGGATGTTGGATTCTTTCAActgTTTCGATTTGCAACATGGAAGGACACACTGATGATGGTAGTGGGGGGCTTATGTGCACTAGTCCACGGGGCAGCCTCCCCTCTCATGCTCTTGGTGTATGGCATGATGACGAACACCTTTGTGGCATACGAGCTAGAGGTCCAAGAACTGGCAGACCCCAACAAAACCTGCATTAACAACACCATCACCTGGATCAATGGCTCCATATTTGAAATAGCAGAGAACACAACGGTCTTCTGTGGGGTGGATATTGAAGCACAGATGACCATGTTTGCATATTACTATGTTGGTATTGGATTAGGAGTCTTGATTGTTAGTTATTTCCAAATTGCCCTCTGGGTGTCTGCTGCTGCCAGACAGATCCAGAGAATCAGGAAGACTTACTTTAGGAAGGTGATGCGAATGGAGATTGGCTGGTTTGACTGCAATTCAGTGGGAGAATTAAACACCAGGATATCAGACGACATCAACAAGATCAACAATGCGATAGCTGACCAGGTGTCTATCTTCATTGAGAGGATCTCCACTTTCATCTTCGGCTTCATGGTGGGGTTCATTGGAGGATGGAAGTTGACCCTGGTGGTCATCGCAGTAAGCCCACTAATAGGACTTGCTGCTGGACTAATGGCCATGGCTGTTGCCAGACTGACAGGTCGGGAGCTCCAGGCTTATGCCAAGGCAGGGTCAGTAGCTGATGAGGTACTGTCATCCATCAGAACAGTGGCAGCCTTTGGAGGGGAGGACAAGGAGGTTGAAAGGTATGACAAAAACCTTATTGAGGCTCAGAACTGGGGTGTGAAAAAGGGGACGATCATTGGAGTGTTTCAAGGATACCTGTGGTGTATCATCTTCCTCTGCTATGCTTTGGCATTCTGGTATGGCTCAAAACTGGTCATCGAAACCAAAGAGCTATCCCCTGGTACTCTCATCCAGGTATTCTTTGGAGTTCTCATGGCAGCTATGAACCTGGGTCAGGCCTCACCATGCCTGGAAGCCTTCGCCTCAGGTCGAGCTGCAGCCAAGACCATCTTCGATACCATTGACCGAGAGCCAGAAATCGATTGTTTCTCGGAGAAGGGCCACAAACTAGACAAGGTCACAGGTGACATTGAATTCCACAACGTCACATTTAACTACCCCTCTAGGCCAGATGTGAAGattttagattctttgaGCATGCTGATCAGAGCAGGAGAAACCACAGCTTTTGTTGGGCCAAGCGGATCAGGGAAGAGCACCACAGTTCAACTCTTTCAGAGATTCTACAACCCCAAGGAAGGAATGTTGACTTTGGATGGCCATGACATCCGCAGCCTGAACATCCAGTGGCTTCGCTCTTTGATTGGTATAGTAGAGCAGGAGCCGGTGCTGTTCGCCACGACTATCGCTGACAACATCCGCTACGGGCGACCCGGGGTCACCATGGACGACATCATCCAGGCCACCAAGGAGGCTAACGCCTATAACTTCATCATGGACCTCCCGCAGAGGTTTGACACGCTTGTGGGTGAGGGTGGTGGtcagatgagtggaggacagaagcAGAGGATCGCTATTGCCCGAGCTCTGATCCGCAACCCCAGGATCCTGCTGCTGGACATGGCTACCTCGGCTCTGGACAACGAGAGTGAGGCCATTGTACAAGAGGCGCTTGACAAGGCTCGGATGGGCAGGACAACCATTACCATCGCCCACCGCCTCTCCACTATCCGCAATGCTGATGTCATTATTGGCTTTGAGCACGGAAGGGCAGTGGAAAGCGGTACACACAATGATCTTCTAGAAAAGAAGGGGGTCTACTTTACTCTCGTTACCCTTCAGAACCAAGGAAATGACATGCCCAGTGACAAAACAAACACAGATCCGGACAATGAAACCATTGAGGAAGAAATCCTTCAGAGTTTCAGTCGAGGAAGCTACGAATCTGGGTTGAGGCAATCTCTTCGCCTGCGATCTCACACCCAGCTGTCAAACGAACTCATCCCTGATGCCATAACTGGCAGTATCAGAATTAAATCAGACAAATTCCTTGCCATAATGGAAAACGAGATGGAACCTCAAAGGTCAAAGCATTCCAAGGAGGAAGCAGAGGAACGTGTGGAGCCAGCACCAGTGGCTCGAATCCTGAAGTACAACAAGTCAGAGTGGCCTTACATGCTATTGGGATCTATAGGAGCTGCCATCAACGGCTCCGTCAATCCAATCTATGCTATCTTATTCAGCCAGATCCTTGGGACGTTCTCTATACGTGACCTGGATGAACAGAGAGCGCAGATCAATGGAATATGTATCCTGTTCTGCGCTGTGGCGGTTACAAGTTTCTTCTCTCAATTCTTACAGGGCTATGCATTTGGGAAGTCTGGGGAGCTCCTGACCCGCAGGCTAAGGAAGGTGGGCTTCCAGGCCATGTTGAAACAGGAGGTAGGCTGGTTTGATGACCCCAGGAACAGCCCTGGAGCTCTCACCACCAGGCTGGCCACCGACGCCTCCATGGTCCAGGGGGCAACTGGATCGCAGATTGGGATGATTGTGAACTCCTTGACCAACATCGGAGCGTCTTTCATCATTGCGTTCTCCTTTAGCTGGAAGTTAAGCTTGGTAGTGGTTTGCTTTTTACCACTTATTGGCTTGTCTGGGGTCTTCCAAGCCAAAATGCTGACAGGTTTTGCAAATGAGGATAAGAAGGCAATGGAAGCAGCAGGACAGGTGTCCAGCGAGGCTCTAGCCAACATCAGGACCATCGCAGGGCTGTGCAAGGAGAGCACATTTGTGGAGACCTATGAGCAGCAGCTGGAGGCTCCGTATAAGTCTGCCAAGAAGAAGGCAAACATCTACGGCATCTGTTTTGCCTTTGCCCAGTGTGTTATCTTTATGGCGTACGCCGCCTCCTTTAGATATGGAGGCTATCTGGTCAGCTCTGAAAGATTACACTACCTGGTGGTCTTCAGAGTGATCTCTGCCATTGTGATCAGTGGGACGGCGCTGGGAAAAGCTTCCTCATTCACCCCAGATTATGCCAAAGCCAAGATTGCAGCGGCCCAGTTCTTTAAACTGTTGGACCGAGTCCCCAAAATCAGCATGAGTCAGATAGACGGGGAGAAATGGGATGATTTCAAAGGGGAGTTAGAATTCATCAACTGCAAGTTTACATACCCAACCCGGCCTGACATCCAGGTGCTAAATGGACTACTGGTGTCTGTGAAACCGGGCCAGACCCTGGCCTTTGTGGGCTGTAGCGGCTGCGGGAAGAGCACTAGTGTGCAGCTGTTGGAGAGGTTCTATGATCCAGATGAGGGCAGAGTGTTGATCGATGGCCGTCCATCACACACTGTCAACGTGCCCTTCCTGAGGGCTCAGATTGGCATCGTCTCCCAAGAGCCCGTGCTGTTTGACTGCAGTATTGCTGAAAACATACAGTATGGTGATAACACCAGGAGCATGAGCATGGAGGAGATTGTTGATGCTGCAAAGAAAGCTTATCTCCATGACTTTGTGATGACTCTGCCAGATAAATATGAGACTCCGGTTGGCGCCCAGGGCTCCCAGCTCTCCAGAGGGCAAAAACAACGCATCGCCATCGCTCGGGCAATAGTCAGGAACCCTAAGATCCTGCTTCTGGATGAGGCCACCTCTGCGTTGGACACAGAGAGTGAAAAGACAGTGCAGGCGGCTTTGGATGAGGCCAGACGTGGACGCACCTGCATTGTCATTGCCCACAGACTGTCTACCATCCAGACGGCAGATATCATAGCCGTCATGTCCCAAGGTGCTGTCATAGAAAGGGGGACACATGAGGAGCTCATGGCTAAGAGGGCTGCCTACTACAAACTAGTCACAACAGGGGCTCCGATCAGCTAAACCTGATAGATGCACATTTTCTATAGAGGGGATGCTTTATGAGGAAATGGAGTTTGTCACTAACCAAAGTGCATAAATGTGACATTTTTGAAAGAGTAACTATGGAAAAAAACATAAAAGTCCATGGGGGGGAAAGGCTATATTTGCTTGATATACTATTTATTTACTTAATGTCTCTTGAGTTTTTTTTTATATgatattatacactgagtgtacaaacattaggaacacctgctctttccatgtcatagactgaccaggtgaatccaggtgaaagctataatcctttattgatgtcacctgttaaatccacttcaatcagtgtagatgaaggggaagagtcaggttaaagaaggatttttaagcctttagacaattgagacatggattgtgaatgtcTGCCGTTAAGAGGGTGGAAGGGCATAAGGTTTTTTACACTCATTGTATATGGCCATAGAGATCAATTAGGTTTTATTTTTGCAAAACAGATGGAACCTTTAAAGTAATTAATTGAAGTATTTTGTAATCCAATGTATGTTTTTGCTCAAGAAGGTTACAATTATTGGTATGAATCATATGATCTGTCGCCGATTTAAATATTTATTTgcattcatttgtttacagaaaaatatattttattttattaacctTTAGTGTTTGATGCTTGATCTTTTGTCAACTAAAAAAATCCATGTCAGAACGGATTGTTAATTTTATTTAATTCATACAGATACATTAGTTTAAAAATGCAGTTCTTTGAAAGGAAAGCTACGTACACTGGGTAACGTAACTTGTGTCGTCCTTGAGAAAGTGCTAGTCTAATGCTGACAGGGTGTGCTGCAACCATAAACGACGGATAACGTCCGGCATTGTTTTTTTCTGTT
>XM_021579077.2
GCTATAGTTTGCTCTTCATTCTATAGTAAGATAGGGAGGAAAGCATATATGAGAAATTATTATTCTGCGTAGCTGAAGTGGATCTTCATGACCCAGCGAGGACGTGCCTGTCAGAGTTAAAGCTACAAAAATGAAGGATCCTATTTACTTGAAAAAGGTCACTTCTCTACaggaggacacagacagagaataTTGCCGTACAAAAccagacagagaagaagaagAGAATGAAAAAGGAGAtggaaagaaaaaagaaaagctCTTGGATGTTGGATTCTTTCAActgTTTCGATTTGCAACATGGAAGGACACACTGATGATGGTAGTGGGGGGCTTATGTGCACTAGTCCACGGGGCAGCCTCCCCTCTCATGCTCTTGGTGTATGGCATGATGACGAACACCTTTGTGGCATACGAGCTAGAGGTCCAAGAACTGGCAGACCCCAACAAAACCTGCATTAACAACACCATCACCTGGATCAATGGCTCCATATTTGAAATAGCAGAGAACACAACGGTCTTCTGTGGGGTGGATATTGAAGCACAGATGACCATGTTTGCATATTACTATGTTGGTATTGGATTAGGAGTCTTGATTGTTAGTTATTTCCAAATTGCCCTCTGGGTGTCTGCTGCTGCCAGACAGATCCAGAGAATCAGGAAGACTTACTTTAGGAAGGTGATGCGAATGGAGATTGGCTGGTTTGACTGCAATTCAGTGGGAGAATTAAACACCAGGATATCAGACGACATCAACAAGATCAACAATGCGATAGCTGACCAGGTGTCTATCTTCATTGAGAGGATCTCCACTTTCATCTTCGGCTTCATGGTGGGGTTCATTGGAGGATGGAAGTTGACCCTGGTGGTCATCGCAGTAAGCCCACTAATAGGACTTGCTGCTGGACTAATGGCCATGGCTGTTGCCAGACTGACAGGTCGGGAGCTCCAGGCTTATGCCAAGGCAGGGTCAGTAGCTGATGAGGTACTGTCATCCATCAGAACAGTGGCAGCCTTTGGAGGGGAGGACAAGGAGGTTGAAAGGTATGACAAAAACCTTATTGAGGCTCAGAACTGGGGTGTGAAAAAGGGGACGATCATTGGAGTGTTTCAAGGATACCTGTGGTGTATCATCTTCCTCTGCTATGCTTTGGCATTCTGGTATGGCTCAAAACTGGTCATCGAAACCAAAGAGCTATCCCCTGGTACTCTCATCCAGGTATTCTTTGGAGTTCTCATGGCAGCTATGAACCTGGGTCAGGCCTCACCATGCCTGGAAGCCTTCGCCTCAGGTCGAGCTGCAGCCAAGACCATCTTCGATACCATTGACCGAGAGCCAGAAATCGATTGTTTCTCGGAGAAGGGCCACAAACTAGACAAGGTCACAGGTGACATTGAATTCCACAACGTCACATTTAACTACCCCTCTAGGCCAGATGTGAAGattttagattctttgaGCATGCTGATCAGAGCAGGAGAAACCACAGCTTTTGTTGGGCCAAGCGGATCAGGGAAGAGCACCACAGTTCAACTCTTTCAGAGATTCTACAACCCCAAGGAAGGAATGTTGACTTTGGATGGCCATGACATCCGCAGCCTGAACATCCAGTGGCTTCGCTCTTTGATTGGTATAGTAGAGCAGGAGCCGGTGCTGTTCGCCACGACTATCGCTGACAACATCCGCTACGGGCGACCCGGGGTCACCATGGACGACATCATCCAGGCCACCAAGGAGGCTAACGCCTATAACTTCATCATGGACCTCCCGCAGAGGTTTGACACGCTTGTGGGTGAGGGTGGTGGtcagatgagtggaggacagaagcAGAGGATCGCTATTGCCCGAGCTCTGATCCGCAACCCCAGGATCCTGCTGCTGGACATGGCTACCTCGGCTCTGGACAACGAGAGTGAGGCCATTGTACAAGAGGCGCTTGACAAGGCTCGGATGGGCAGGACAACCATTACCATCGCCCACCGCCTCTCCACTATCCGCAATGCTGATGTCATTATTGGCTTTGAGCACGGAAGGGCAGTGGAAAGCGGTACACACAATGATCTTCTAGAAAAGAAGGGGGTCTACTTTACTCTCGTTACCCTTCAGAACCAAGGAAATGACATGCCCAGTGACAAAACAAACACAGATCCGGACAATGAAACCATTGAGGAAGAAATCCTTCAGAGTTTCAGTCGAGGAAGCTACGAATCTGGGTTGAGGCAATCTCTTCGCCTGCGATCTCACACCCAGCTGTCAAACGAACTCATCCCTGATGCCATAACTGGCAGTATCAGAATTAAATCAGACAAATTCCTTGCCATAATGGAAAACGAGATGGAACCTCAAAGGTCAAAGCATTCCAAGGAGGAAGCAGAGGAACGTGTGGAGCCAGCACCAGTGGCTCGAATCCTGAAGTACAACAAGTCAGAGTGGCCTTACATGCTATTGGGATCTATAGGAGCTGCCATCAACGGCTCCGTCAATCCAATCTATGCTATCTTATTCAGCCAGATCCTTGGGACGTTCTCTATACGTGACCTGGATGAACAGAGAGCGCAGATCAATGGAATATGTATCCTGTTCTGCGCTGTGGCGGTTACAAGTTTCTTCTCTCAATTCTTACAGGGCTATGCATTTGGGAAGTCTGGGGAGCTCCTGACCCGCAGGCTAAGGAAGGTGGGCTTCCAGGCCATGTTGAAACAGGAGGTAGGCTGGTTTGATGACCCCAGGAACAGCCCTGGAGCTCTCACCACCAGGCTGGCCACCGACGCCTCCATGGTCCAGGGGGCAACTGGATCGCAGATTGGGATGATTGTGAACTCCTTGACCAACATCGGAGCGTCTTTCATCATTGCGTTCTCCTTTAGCTGGAAGTTAAGCTTGGTAGTGGTTTGCTTTTTACCACTTATTGGCTTGTCTGGGGTCTTCCAAGCCAAAATGCTGACAGGTTTTGCAAATGAGGATAAGAAGGCAATGGAAGCAGCAGGACAGGTGTCCAGCGAGGCTCTAGCCAACATCAGGACCATCGCAGGGCTGTGCAAGGAGAGCACATTTGTGGAGACCTATGAGCAGCAGCTGGAGGCTCCGTATAAGTCTGCCAAGAAGAAGGCAAACATCTACGGCATCTGTTTTGCCTTTGCCCAGTGTGTTATCTTTATGGCGTACGCCGCCTCCTTTAGATATGGAGGCTATCTGGTCAGCTCTGAAAGATTACACTACCTGGTGGTCTTCAGAGTGATCTCTGCCATTGTGATCAGTGGGACGGCGCTGGGAAAAGCTTCCTCATTCACCCCAGATTATGCCAAAGCCAAGATTGCAGCGGCCCAGTTCTTTAAACTGTTGGACCGAGTCCCCAAAATCAGCATGAGTCAGATAGACGGGGAGAAATGGGATGATTTCAAAGGGGAGTTAGAATTCATCAACTGCAAGTTTACATACCCAACCCGGCCTGACATCCAGGTGCTAAATGGACTACTGGTGTCTGTGAAACCGGGCCAGACCCTGGCCTTTGTGGGCTGTAGCGGCTGCGGGAAGAGCACTAGTGTGCAGCTGTTGGAGAGGTTCTATGATCCAGATGAGGGCAGAGTGTTGATCGATGGCCGTCCATCACACACTGTCAACGTGCCCTTCCTGAGGGCTCAGATTGGCATCGTCTCCCAAGAGCCCGTGCTGTTTGACTGCAGTATTGCTGAAAACATACAGTATGGTGATAACACCAGGAGCATGAGCATGGAGGAGATTGTTGATGCTGCAAAGAAAGCTTATCTCCATGACTTTGTGATGACTCTGCCAGATAAATATGAGACTCCGGTTGGCGCCCAGGGCTCCCAGCTCTCCAGAGGGCAAAAACAACGCATCGCCATCGCTCGGGCAATAGTCAGGAACCCTAAGATCCTGCTTCTGGATGAGGCCACCTCTGCGTTGGACACAGAGAGTGAAAAGACAGTGCAGGCGGCTTTGGATGAGGCCAGACGTGGACGCACCTGCATTGTCATTGCCCACAGACTGTCTACCATCCAGACGGCAGATATCATAGCCGTCATGTCCCAAGGTGCTGTCATAGAAAGGGGGACACATGAGGAGCTCATGGCTAAGAGGGCTGCCTACTACAAACTAGTCACAACAGGGGCTCCGATCAGCTAAACCTGATAGATGCACATTTTCTATAGAGGGGATGCTTTATGAGGAAATGGAGTTTGTCACTAACCAAAGTGCATAAATGTGACATTTTTGAAAGAGTAACTATGGAAAAAAACATAAAAGTCCATGGGGGGGAAAGGCTATATTTGCTTGATATACTATTTATTTACTTAATGTCTCTTGAGTTTTTTTTTATATgatattatacactgagtgtacaaacattaggaacacctgctctttccatgtcatagactgaccaggtgaatccaggtgaaagctataatcctttattgatgtcacctgttaaatccacttcaatcagtgtagatgaaggggaagagtcaggttaaagaaggatttttaagcctttagacaattgagacatggattgtgaatgtcTGCCGTTAAGAGGGTGGAAGGGCATAAGGTTTTTTACACTCATTGTATATGGCCATAGAGATCAATTAGGTTTTATTTTTGCAAAACAGATGGAACCTTTAAAGTAATTAATTGAAGTATTTTGTAATCCAATGTATGTTTTTGCTCAAGAAGGTTACAATTATTGGTATGAATCATATGATCTGTCGCCGATTTAAATATTTATTTgcattcatttgtttacagaaaaatatattttattttattaacctTTAGTGTTTGATGCTTGATCTTTTGTCAACTAAAAAAATCCATGTCAGAACGGATTGTTAATTTTATTTAATTCATACAGATACATTAGTTTAAAAATGCAGTTCTTTGAAAGGAAAGCTACGTACACTGGGTAACGTAACTTGTGTCGTCCTTGAGAAAGTGCTAGTCTAATGCTGACAGGGTGTGCTGCAACCATAAACGACGGATAACGTCCGGCATTGTTTTTTTCTGTT

Function

NR:

description
bile salt export pump isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05664 ABCB11; ATP-binding cassette, subfamily B (MDR/TAP), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579075.2 False 5027 mRNA 0.47 28 15590720 15607266
XM_021579077.2 True 5028 mRNA 0.47 28 15590813 15607266

Neighbor

gene id symbol gene type direction distance location
lrp2a lrp2 coding upstream 17813 15503060 ~ 15572970 (+)
fastkd1 fakd1 coding upstream 175600 15401792 ~ 15415120 (+)
mettl5 mettl5 coding upstream 231840 15354532 ~ 15358880 (+)
LOC110501461 tlk1 coding upstream 442389 15122642 ~ 15148331 (+)
mettl8 mettl8 coding upstream 473567 15104378 ~ 15117153 (+)
spc25 spc25 coding downstream 2981 15610247 ~ 15614355 (+)
stk39 stk39 coding downstream 40647 15647913 ~ 15683499 (+)
LOC110501488 NA coding downstream 251900 15859166 ~ 15861044 (+)
csrnp3 LOC106581794 coding downstream 315116 15922382 ~ 15988118 (+)
LOC110501495 cobll1 coding downstream 510920 16118186 ~ 16151990 (+)
G1780625 NA non-coding upstream 109715 15480346 ~ 15481005 (+)
G1780585 NA non-coding upstream 144981 15444706 ~ 15445739 (+)
G1780584 NA non-coding upstream 148550 15441928 ~ 15442170 (+)
G1780583 NA non-coding upstream 149550 15440926 ~ 15441170 (+)
G1781292 NA non-coding downstream 229747 15837013 ~ 15838727 (+)
G1781333 NA non-coding downstream 346287 15953553 ~ 15972242 (+)
G1781365 LOC106581799 non-coding downstream 441587 16048853 ~ 16049113 (+)
G1781415 NA non-coding downstream 442528 16049794 ~ 16050057 (+)
G1780575 NA other upstream 156900 15424711 ~ 15433820 (+)
G1780491 NA other upstream 243054 15291362 ~ 15347666 (+)
G1780353 NA other upstream 547077 15038099 ~ 15043643 (+)
G1779636 NA other upstream 687460 14902795 ~ 14903260 (+)
G1779170 NA other upstream 1510981 14079497 ~ 14079739 (+)
G1781293 LOC106586198 other downstream 232338 15839604 ~ 15848595 (+)
G1781423 LOC106581799 other downstream 455491 16062757 ~ 16063401 (+)
G1781813 NA other downstream 665123 16272389 ~ 16273110 (+)
G1782390 NA other downstream 1398768 17006034 ~ 17041673 (+)
G1783087 NA other downstream 1688687 17295953 ~ 17296359 (+)

Expression


Co-expression Network