spc25 (spc25)


Basic Information

Item Value
gene id spc25
gene name spc25
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15610247 ~ 15614355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579079.2
GAGTTTATTTCTTAAATTACTACTTTAAATGTGGATAAAAACTAAATTTCCGGTGTGGCGTCACAGGCCCATCCTTGTTTCCGTGAGCGCGGAATTTTGAAAACAACAGCGAACAGCTGCCGAAAGCTTCGGTCGAGGATCGTCCGAAAATTGCCACGATCATCATGAACTGCATTACAGATGCAAACATTGGGAATTGGTTTAGTAGCACAATGGAAGACATTCGCAACAAAATGCTTTTTCAGGGAACGGCCGAGATGACGGAGACCGGCATGGATTGGGTTCAAACCCACCGAAAGACCGTCAGATCTGTTCTCGATACGTGTTCAAAGAAATGCAAGGATGATGAAATAATATTTGAAACGATAGACTCATACAAAACAGACTTGGAAAATAAAAATGCCTCATTGGTGGAGAAGAGAAATGCCATTGCGAAGAGACTGTCTGAAGTGGAAGGGAAGAACGAACAGAAAAGCAAGATCATTGAAAAGATTGAGATGGTCCGAGTGGAACAAgccaagaaaaaaaaatTGATTGTGTCCCAAAACAAAGCCAACAAGGACAGACTGAAAAATCTCAACAAAGCCAAGCAGGTGTTTCAGGGTCGGCTGGGATTGGAAATTAGAAAAATTCACGGAGAGAAATTGCAGTTTATCTTCCGAGACATCAACCCAAGAGACTCGGAATGTGTATACACCTTCATGCTGAGGATCAGCGAAGGAGGATTATAccagaTTGTGTCTAGCGACCCACCACTGGACTGCATGGCTCACTTGGAGCAGAGACTCCAGGAGACCAACAACTTCTCTGCCTTCCTTGCAAATGTCCGGAGAGAATTTCTCGCTCTAAAACCCCAAtagttgaagaaaaaaaaaatgtggatCTGTTTTTATATTTTAACATATTTTAGTCACATCCTGTGTGTTTTGTCTCCAACATTGTTTGTAATATTAATGTTTTTATTATATGACGTCCATTTTAAAAGGCTAGGTTGCAATTTTCAAGTTGGTGGGGTTCTTTAGTGGCCCAAAGATTTGATCAGGCATTTTGGAATTGGTTTAATTAAATAAACGCTTTTtgtacaca
>XM_021579080.2
GAAAGCTTCGGTCGAGGATCGTCCGAAAATTGCCACGATCATCATGAACTGCATTACAGATGCAAACATTGGGAATTGGTTTAGTAGCACAATGGAAGACATTCGCAACAAAATGCTTTTTCAGGGAACGGCCGAGATGACGGAGACCGGCATGGATTGGGTTCAAACCCACCGAAAGACCGTCAGATCTGTTCTCGATACGTGTTCAAAGAAATGCAAGGATGATGAAATAATATTTGAAACGATAGACTCATACAAAACAGACTTGGAAAATAAAAATGCCTCATTGGTGGAGAAGAGAAATGCCATTGCGAAGAGACTGTCTGAAGTGGAAGGGAAGAACGAACAGAAAAGCAAGATCATTGAAAAGATTGAGATGGTCCGAGTGGAACAAgccaagaaaaaaaaatTGATTGTGTCCCAAAACAAAGCCAACAAGGACAGACTGAAAAATCTCAACAAAGCCAAGCAGGTGTTTCAGGGTCGGCTGGGATTGGAAATTAGAAAAATTCACGAGAAATTGCAGTTTATCTTCCGAGACATCAACCCAAGAGACTCGGAATGTGTATACACCTTCATGCTGAGGATCAGCGAAGGAGGATTATAccagaTTGTGTCTAGCGACCCACCACTGGACTGCATGGCTCACTTGGAGCAGAGACTCCAGGAGACCAACAACTTCTCTGCCTTCCTTGCAAATGTCCGGAGAGAATTTCTCGCTCTAAAACCCCAAtagttgaagaaaaaaaaaatgtggatCTGTTTTTATATTTTAACATATTTTAGTCACATCCTGTGTGTTTTGTCTCCAACATTGTTTGTAATATTAATGTTTTTATTATATGACGTCCATTTTAAAAGGCTAGGTTGCAATTTTCAAGTTGGTGGGGTTCTTTAGTGGCCCAAAGATTTGATCAGGCATTTTGGAATTGGTTTAATTAAATAAACGCTTTTtgtacaca

Function

symbol description
spc25 Predicted to be involved in chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in nucleus. Predicted to be part of Ndc80 complex. Orthologous to human SPC25 (SPC25 component of NDC80 kinetochore complex).

NR:

description
kinetochore protein Spc25 isoform X2

GO: NA

KEGG:

id description
K11550 SPBC25, SPC25; kinetochore protein Spc25, animal type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579079.2 False 1086 mRNA 0.41 7 15610247 15614355
XM_021579080.2 True 962 mRNA 0.41 7 15610368 15614355

Neighbor

gene id symbol gene type direction distance location
abcb11a LOC106581787 coding upstream 2981 15590720 ~ 15607266 (+)
lrp2a lrp2 coding upstream 37340 15503060 ~ 15572970 (+)
fastkd1 fakd1 coding upstream 195127 15401792 ~ 15415120 (+)
mettl5 mettl5 coding upstream 251367 15354532 ~ 15358880 (+)
LOC110501461 tlk1 coding upstream 461916 15122642 ~ 15148331 (+)
stk39 stk39 coding downstream 33558 15647913 ~ 15683499 (+)
LOC110501488 NA coding downstream 244811 15859166 ~ 15861044 (+)
csrnp3 LOC106581794 coding downstream 308027 15922382 ~ 15988118 (+)
LOC110501495 cobll1 coding downstream 503831 16118186 ~ 16151990 (+)
LOC110501496 LOC106581801 coding downstream 537884 16152239 ~ 16217207 (+)
G1780625 NA non-coding upstream 129242 15480346 ~ 15481005 (+)
G1780585 NA non-coding upstream 164508 15444706 ~ 15445739 (+)
G1780584 NA non-coding upstream 168077 15441928 ~ 15442170 (+)
G1780583 NA non-coding upstream 169077 15440926 ~ 15441170 (+)
G1781292 NA non-coding downstream 222658 15837013 ~ 15838727 (+)
G1781333 NA non-coding downstream 339198 15953553 ~ 15972242 (+)
G1781365 LOC106581799 non-coding downstream 434498 16048853 ~ 16049113 (+)
G1781415 NA non-coding downstream 435439 16049794 ~ 16050057 (+)
G1780575 NA other upstream 176427 15424711 ~ 15433820 (+)
G1780491 NA other upstream 262581 15291362 ~ 15347666 (+)
G1780353 NA other upstream 566604 15038099 ~ 15043643 (+)
G1779636 NA other upstream 706987 14902795 ~ 14903260 (+)
G1779170 NA other upstream 1530508 14079497 ~ 14079739 (+)
G1781293 LOC106586198 other downstream 225249 15839604 ~ 15848595 (+)
G1781423 LOC106581799 other downstream 448402 16062757 ~ 16063401 (+)
G1781813 NA other downstream 658034 16272389 ~ 16273110 (+)
G1782390 NA other downstream 1391679 17006034 ~ 17041673 (+)
G1783087 NA other downstream 1681598 17295953 ~ 17296359 (+)

Expression


Co-expression Network