nostrin (nostrin)


Basic Information

Item Value
gene id nostrin
gene name nostrin
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15614412 ~ 15618681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958846.1
GTGATTTCCGCATGAATGACTTTAGGAGGAGCGTGTTCAAAGTGCAAAGTCAATAAACCCTCTTAGACTGAAAATGGCGGACCCTGTGAGCACCTGTGCTTACAACCTGTTGTACCAAGATCTGAAGAAGTTCTCAAAAAATGGGGAGCATTTCTGTAAGGAGCTCATGACAGTATTTCAGCAAAGGGCTGAGCTGGAGATCAGTTATGCCAAGGGGCTTCAGAAGCTTGCTGGAAAACTCATGAAGGCATCCAAAGGAATGAATGACAATTCCACATACCGAGCATGGTGCCATGTATCTGATGACATGTACTCtacagcagacacacacagAGCACTAGGAAGTGCTTTTCAGGCAGAGGCAATTTTAGAAATTCGACAAGTAATTGAGGAGCACAACAAGAGGAAGAGACCTCTTGATAATGTTGTTGAAAGAAATGCAAAACTTGTTGTGACGAACTGGAGTGAACAAATCAAGATGAAGAAGAAATTGGTTGGATTGACAAGAGAGCATGAGGCCCTGTTCAACTTTGTTGAAAAGAATACACGTATTTGCACAGAAAAAGAAAAACAGAAGATGCTGACCAGACTGACAAAGTCTGCTGAGGCCCAGACCAGAACAGATGAGGAGTACTTCACCATCAACATGGATGGCCATGAAATCAGACTGAAGTGGGAAAATACACTGAAAAACTGCTACCAGATAATCCAGGAGGTTGAGAAACAGCGGATAGAAGTTCTGTGCAACATATTGAGTAAATACAACCTCCACATGGCAAGCTTCAGACACACCCTTGTACATagacagaaacaaatAGAACAAGCCATCCAGAAAGTTGATGTGGAAAAGGATATCCTAAATCTGGTGGAGGAGACCAGTGTAACAGCAGAGGAGAACAAGGCTAAGTTTCTGATGACTGATTATTTTGAGGAGGACAGTAAGTCATTGATGGAAaaagacaggagaagagatgCCATCAAGTCCAAACTCCAGCGGCTGGGGGACAGTATCGCAAAAACAAAGAAAGACTGTGAAGGTCTTGAGAGACTGGTGAAGACTTACTCTGAAAACCCATCGTTCTCAAACAAAAATAACCTGGAAGAAACGGAACAGTTGATTGATGAGACCACTCTGAAACTGAACCTTCTTGAAGCAACTCATTGCAAACTCTCCAGCACATTGGCTGAATTGGAGGGAAAACCTAAGACTTTGCATCGATTCAGTGCCAGTATAACAAAATGGAAAGAAAAAGATTGCGAGCACAGTATTGTTCAGCTGTCCCGTCCAGTCAAAATAAAAAAGACACCGTTCAGATCGCGTTTGAGGAGCTCCATCATTTACAAAGGACCCCCTCAGAGTGTGACATCAGCAGAGGCCTCATCAGTAGAAGTAAACAAAgtctacactgctgtcatccaaGATACTGCAGCTCCAGGGGAATGTGGCTCTGTCAATGGAGCCATGTCCTTGACTGATGACAAGGAAGGAGAAGGTGCAGAGTGGTGTAGCATTGGGAAATGCAAAGCTGTTTACGATTTCACATCAGACAGAGATGATGAGTTGAATATGAAAGAAGGAGACCTTCTTGACATCTATCAAAAAGAAGACAGCGGTTGGTGGTATGGGATATTGAATGGACAGATAGGCCATTTTCCATCAACCTACATTGAGGAGCTGCCCATGTTAAGTGTTGTAGAAACATCAGATGTATGAGTCAGTGTTGGCGCAAATGGACAGGGTA

Function

symbol description
nostrin Acts upstream of or within several processes, including glomerular epithelium development; regulation of filopodium assembly; and sprouting angiogenesis. Orthologous to human NOSTRIN (nitric oxide synthase trafficking).

NR:

description
nostrin

GO:

id name namespace
GO:0050999 regulation of nitric-oxide synthase activity biological_process
GO:0007165 signal transduction biological_process

KEGG:

id description
K20126 NOSTRIN; nostrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958846.1 True 1742 mRNA 0.43 16 15614412 15618681

Neighbor

gene id symbol gene type direction distance location
dhrs9 LOC106581786 coding downstream 28015 15581319 ~ 15586397 (-)
rdh1 LOC106581784 coding downstream 33453 15577071 ~ 15580959 (-)
zgc:172182 LOC106581782 coding downstream 112663 15497172 ~ 15501749 (-)
col28a2a LOC106581781 coding downstream 133898 15446052 ~ 15480514 (-)
bbs5 bbs5 coding downstream 180530 15424718 ~ 15433882 (-)
cers6 cers6 coding upstream 4776 15623457 ~ 15645629 (-)
b3galt1b LOC106581793 coding upstream 65742 15684423 ~ 15825221 (-)
xirp2b LOC106586198 coding upstream 218338 15837019 ~ 15870045 (-)
LOC110501489 LOC106581797 coding upstream 327784 15946465 ~ 15957499 (-)
galnt3 galnt3 coding upstream 371458 15990139 ~ 16000472 (-)
G1781137 lrp2 non-coding downstream 45878 15567503 ~ 15568534 (-)
G1781106 lrp2 non-coding downstream 75790 15534033 ~ 15538622 (-)
G1781027 NA non-coding downstream 226442 15387764 ~ 15387970 (-)
G1781025 NA non-coding downstream 227961 15385933 ~ 15386451 (-)
G1781021 NA non-coding downstream 234727 15379432 ~ 15379685 (-)
G1781192 NA non-coding upstream 53542 15672223 ~ 15678026 (-)
G1781203 NA non-coding upstream 71108 15689789 ~ 15690167 (-)
G1781260 NA non-coding upstream 166340 15785021 ~ 15796656 (-)
G1781449 NA non-coding upstream 209818 15828499 ~ 15891725 (-)
G1781526 NA non-coding upstream 345323 15964004 ~ 15965985 (-)
G1778224 NA other downstream 2283917 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 2441433 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 2989718 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 3344298 12268217 ~ 12270114 (-)
LOC110501514 dapl1 other upstream 1438441 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 2250848 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 3556886 19175567 ~ 19179266 (-)
G1785753 NA other upstream 3702507 19321188 ~ 19321859 (-)

Expression


Co-expression Network