LOC110501489 (LOC106581797)


Basic Information

Item Value
gene id LOC110501489
gene name LOC106581797
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15946465 ~ 15957499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579090.2
AACAGCCTTCTTGCACATGCAGACCCAGACCTAGCAGGGAGACACATACTCCCCACAGTTTAGTCTGAGGTCTAGCCACCTCTCAGTAGCACTCAGTGCCAGACCTCGGGGAGGTAGTGTCCTTCTCACAACACAGCTTGTGTAActgaaaagagaggcagagaggcatgGGCTGGGGGAAAAGTGTTCCTGTGGTTAAGCAGGGgcaggggctgaggctggggccaGGGCTGGGGCTGACGCCGGGGCATAGGCTGGGACTGCTGGTTCTGCTGTGCAGCCTAGCCTTGTGTCCAGGGCCCATCCAGGGGGAAAAGGTCCTGGTGATGCCTGTAGAAGGGAGCCACTGGCTGAGTATGAAGCTTCTGGTGAAGGAGCTTGCGGCCAGGGGCCATGAGATGGTGGTGCTGGTCCCTGAGACATCCATCCTCATCAAGAGCTCTGACTACCACAGGACTGAGATCTTTAGGGTCCCCTTCAACAAGGCACAGCTGGACAAGAACATCGACAAATTGAAGGACGACATGTTCCGCAAGACCCCGAAGGTAACGGACATATTTATGAACGTGCAGGGCCTGATTGACTTCACCGACATGCAGGTGAAAGGCTGTGAGGGTCTTCTGTATGACAAGCCCCTGATGCAGCGACTGAGAGGAGAAGGGTTCAAGATGATGCTGACCGACCCCTTCCTACCCTGTGGATCCATCATCGCTGAGTCCTTCAACATTCCAGCGGTGTACTTCTTGAAGGGGATCCCCTGTGGGATGGAGGATAGGGCTGCCCAGTGCCCCAATCCCCCATCCTACGTACCACGCTTCTTCTCCGGCAACACTGACCACATGGACTTCCTAGGGAGAGTTAAGAACATGCTCATGTACGGTGTGGAGAGCTACCTGTGTACGGTAATGTTTGCTAGCTTTGACGAGCTGACCAGTAGGTACCTGGAGAAGGACATGACGTACAGGGAACTGTTGGGTCATGGGGCGATCTGGCTGCTGAGGTATGACTACTCCTTTGAGTATCCCAAACCCACGATGCCCAACATGGTCCACATTGGAGGCATCAACTGTGGTAAAAGAGACCCACTTCCAGAGGATCTGCAGGAGTTTGTGGATGAGTCAGGAGAGGATGGCTTCGTGGTCTTCAGCCTGGGCTCTATGGTCTCTCAGATGCCGGAGGAGAAAGCCaagcagttttttgatgccttcAGCAGGATCCCTCAGAGGGTGGTGTGGAGGTACACAGGAGTAGTGCCTAAAAACGCTACAGCCAACGTCAGATTGATGAAGTGGCTTCCTCAGAATGAGCTGCTGGGCCACCCCAGGGTCAAGGCCTTTATAACCCACGGAGGAACCCACGGTACCTATGAGGGGATCTGTAATGGCGTTCCCATGGTGATGCTGCCGTTGTTCGCTGAACAGGGTGACAACGTACACCGCATGGCAGTGAGGGGCGTCGGGGAGGTGCTCAACTTGTTTGATATCACCTCAGAAAAACTGGTGGAGGCTCTCAACAAGGTCATCAACGACAAGAGTTACAAGGAGAAGATGATGAAGCTGTCAGCGGTGCATAAGGACCGTCCCATCGAGCCCCTGGACCTGGCCGTGTTCTGGTCAGAGTTTGTGATGCGTCACGGCGGAGCGGAACACCTGAGACCCGCCGCTCACGACCTCAACTGGATCCAGTACCACAGTCTGGACGTGTTCACTCTGCTACTCACTATAGTTCTCATTGTTGTCATCGTCACCGTTAAATGCTGCATAGTCTGCTTCCGCAAGTGCTGTGGAACGAAGAGGTCTATGAAGAAGAAGAATGCATAGCCGTGGGAAGTAGAGGTGCTgaaggtgctgcagcaccccctggtGGTGGGATGGTAAAATTGTAAGAATAAGATAAAAcaattgtataaaaaaaaaa

Function

NR:

description
UDP-glucuronosyltransferase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K00699 UGT; glucuronosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579090.2 True 1917 mRNA 0.54 5 15946465 15957499

Neighbor

gene id symbol gene type direction distance location
xirp2b LOC106586198 coding downstream 76420 15837019 ~ 15870045 (-)
b3galt1b LOC106581793 coding downstream 121244 15684423 ~ 15825221 (-)
cers6 cers6 coding downstream 300836 15623457 ~ 15645629 (-)
nostrin nostrin coding downstream 327784 15614412 ~ 15618681 (-)
dhrs9 LOC106581786 coding downstream 360068 15581319 ~ 15586397 (-)
galnt3 galnt3 coding upstream 32640 15990139 ~ 16000472 (-)
ttc21b ttc21b coding upstream 45048 16002547 ~ 16021067 (-)
LOC110501493 LOC106581799 coding upstream 88024 16045523 ~ 16088614 (-)
LOC110501500 LOC106581805 coding upstream 583756 16541255 ~ 16596674 (-)
LOC110501502 tbr1 coding upstream 664326 16621825 ~ 16626574 (-)
G1781449 NA non-coding downstream 54740 15828499 ~ 15891725 (-)
G1781260 NA non-coding downstream 149809 15785021 ~ 15796656 (-)
G1781203 NA non-coding downstream 256298 15689789 ~ 15690167 (-)
G1781192 NA non-coding downstream 268439 15672223 ~ 15678026 (-)
G1781137 lrp2 non-coding downstream 377931 15567503 ~ 15568534 (-)
G1781526 NA non-coding upstream 6505 15964004 ~ 15965985 (-)
G1781564 NA non-coding upstream 102477 16059976 ~ 16060205 (-)
G1781567 NA non-coding upstream 108706 16066205 ~ 16066526 (-)
G1781570 NA non-coding upstream 117027 16074526 ~ 16074811 (-)
G1781607 NA non-coding upstream 147690 16105189 ~ 16105649 (-)
G1778224 NA other downstream 2615970 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 2773486 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 3321771 12620582 ~ 12624860 (-)
LOC110501514 dapl1 other upstream 1099623 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 1912030 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 3218068 19175567 ~ 19179266 (-)
G1785753 NA other upstream 3363689 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 3698783 19655763 ~ 19666201 (-)

Expression


Co-expression Network