galnt3 (galnt3)


Basic Information

Item Value
gene id galnt3
gene name galnt3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15990139 ~ 16000472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958860.1
CCCTCTACCTGAAAGGAGCGCACCTGGATCCAACGAGACGGAAGTAGTTTGCAAAGATTGAGAAACGCTgcacaactgtatttttttggggggcaaCAATTACTCTGGAATTCCACGTTATTTCGAAGATGATTTTTATTTAGCGATATGCTCGACAAAACTTGATGGACTTTTAAATCAATCATTTGGAGTCCATTTCCCATACTTTTTATGTAACGTCCCGGTTACCTCCTCTGGTGGCGCAACTGACTGGTAGGTGAAGTACTGTCTCAAAGCTATCTACCCCACACATCTCCAGAAGAATGAGTGGTCTCCGCAGAGTTCTCAGAAGGCGATTACACCCCTTAAAACTGGTGATAGTGGCCCTTATTTTTGTCACATTTCTCTTCCTAATACAACGTGAGGTAGTAAGCCAAAGTCCCTCCCTAGAAGAGCCCTGGCTGAAGGAGATGGCTGTCAAACGGGATGCCATGCTGGGCATGGTGATGGGTGCTGTCAATAACTTTAGGGACGCCATGCCAAAAATGCAGATTAAAGCCCCAGTGcgtcagcatgacaatgcaggGGACTTCTCCTGTTTGCCAGGGACCTACACGGCTGCTGAGTTGAGGCCAGCCCTGGAGCGTCCACCTCAGGACCCCAACAGCCCCGGGGCCTCTGGGAAGCCCTTTCACACAGATAAACTGAGCCCTGCTGAACAGAAGGAGAAGGACCGGGGAGAGGAGAAACACTGTTTTAACCTCTACGCCAGTGACCGCATTTCTCTCAGCCGTGACCTGGGTCCTGATACCAGACCACCAGAATGTATCGAGCAAACGTTCAAGCGCTGTCCCCCTTTGCTGACCACCAGCGTGATCATTGTGTTTCACAATGAAGGCTGGACTACTCTGCTGAGGACGGTGTACAGCGTCCTCCACACCTCCCCTGCCATCTTCCTCAAGGAGATCATCCTGGTGGACGATGCCAGTGTGGACGACGCCTTGAAAGAGGAGTTGGATGAATATTTGAAGCGGCTGCACATCGTGCATGTGGTGCGGCAGCGGGAGAGAAAGGGCCTGATCACCGCTCGGCTACTGGGAGCCTCGGTGGCCACCGGAGACATCCTCACCTTCCTCGACGCTCACTGTGAATGCTTCAGTGGCTGGCTTGAGCCTCTACTGGCCAGGATAGCAGAGAACTACACTGCAGTAGTGAGTCCTGACATCACTACCATTGACCTCAACACTTTTGAGTTTATGAAGCCCTCGCCGTACGGGCAGAACCACAACCGTGGTAACTTCGACTGGGGCCTGTCCTTCGGCTGGGAGAGTCTACCGGACCACGAGAAACAACGGAGGAAGGATGAGACCTATCCTATTAAGACACCGACTTTTGCTGGGGGACTCTTCTCTATCTCCAAGGACTACTTCTATCTCATCGGAAGCTATGATGAACAAATGGAAATCTGGGGCGGCGAGAATATTGAAATGTCTTTCAGAgtgtgGCAGTGTGGAGGTCAGCTAGAAATCATCCCTTGCTCCATCGTGGGTCACGTGTTCCGCACCAAGAGCCCCCACACCTTCCCCAAGGGCACCCAGGTGATCGCACGCAACCAGGTGCGGCTGGCCGAGGTCTGGATGGACGACTACAAGGAAATCTTCTACCGGCGCAACCAGCAAGCCGCCCAGTTGGCCAAAGACAGGGCCTTCGGAGACGTCGGGCGTCGTGTGGACCTCCGGGAGCGGCTGCAGTGCAAGAGCTTCTCCTGGTATTTGAAAAATGTGTATCCAGAGGTCTTCATGCCTgatctcaacccgctccactttGGCTCGGTGAAAAATGTAGGTAAAGACTCGTGTCTGGATGCAGGGGAGAACAACGAGGGAGGGAAACCGCTGATCTTGTATCCATGCCACGGCCTCGGAGGAAACCAGTATTTTGAGTACTCGACCCATCATGAGATCCGGCACAACATTCAGAAGGAGTTGTGTTTGCATGGGACGGATGGAGCcgtgaagctggaagactgccAGTATAAAGGCCGCAATACGTTTGTAGGAGCAGAACAGAAGTGGGAGTTAAGGGAGAACCAGTTATTCTACATCCCAGGATGGAACCTGTGTCTGAGTGCTCGTCATGAGCACCCCTCGTTGGTGGCCTGTAACCCCTCAGACAGATACCAGCTGTGGCTCTACGTCTGACTACAGGACACACATGGTGGACGATGTGTGCCTTGGTATCCTAGGACCATTAGAACAAGTAGCAATTGGCGTACATTTTTGTTACGTTTTATTATCGAAgttgaatttgtatttatttttatacgTAGAAGAACTGCTGCTGGAAAGTTTGCGATTTTTGAGGAGAACGTGACCTCGGGAAGGAAGCGTTCAAACTGATACTAAAGACTGTTTGTTTtactcctttaaaaaaaaaaaaaatcatgattTGGGTAAAGGAATTGTTTTTCTTGTCTTACACGCCAAATGCTCTCTGTAGATTGACGGAGGTAGCTAGGACTGTGGAAAGACTTTGGATGGATACTGAATGAAGAGAGATTTCTTTGAAGAATACGTCTTTTTTTTATATAGTGTGTACTTCGGCGGGAAATCAACATTACATTTTATGTAATTACCAAGGTTTGTTCTTTATTGCCCACACTGAATAATTTATTAATATAAATGTGAAAACCAACAACAATGGACTGTCAAATAATGCAGTAGTGCACTTGCCTCTTGCACAAACTGAATAACTTCGATGTTATACACCAAAGACtaatcaagtttttttttttttttttttctattaaagacatgctccagaa
>XM_036958861.1
AGGCTAAGTACCAAGAAGGACAGGAGAACAGTCACTGTGAATTGTGTCCCTCGTTGAACCTACTTGACAAGACTCCTACTGCGCACCGGAGTATTCCTCCTCCGAATGTCTACGGTGTCCACGTCTTATCTTTACCACCTTAAGCATCGAACACTTTACGGATACCATCTGCCAGGGGTGACTTGGCAAACAGGAATATGTTGGGATATGTCTCAGAGGGTCCAACATGTTCGGTTACCTCCTCTGGTGGCGCAACTGACTGGTAGGTGAAGTACTGTCTCAAAGCTATCTACCCCACACATCTCCAGAAGAATGAGTGGTCTCCGCAGAGTTCTCAGAAGGCGATTACACCCCTTAAAACTGGTGATAGTGGCCCTTATTTTTGTCACATTTCTCTTCCTAATACAACGTGAGGTAGTAAGCCAAAGTCCCTCCCTAGAAGAGCCCTGGCTGAAGGAGATGGCTGTCAAACGGGATGCCATGCTGGGCATGGTGATGGGTGCTGTCAATAACTTTAGGGACGCCATGCCAAAAATGCAGATTAAAGCCCCAGTGcgtcagcatgacaatgcaggGGACTTCTCCTGTTTGCCAGGGACCTACACGGCTGCTGAGTTGAGGCCAGCCCTGGAGCGTCCACCTCAGGACCCCAACAGCCCCGGGGCCTCTGGGAAGCCCTTTCACACAGATAAACTGAGCCCTGCTGAACAGAAGGAGAAGGACCGGGGAGAGGAGAAACACTGTTTTAACCTCTACGCCAGTGACCGCATTTCTCTCAGCCGTGACCTGGGTCCTGATACCAGACCACCAGAATGTATCGAGCAAACGTTCAAGCGCTGTCCCCCTTTGCTGACCACCAGCGTGATCATTGTGTTTCACAATGAAGGCTGGACTACTCTGCTGAGGACGGTGTACAGCGTCCTCCACACCTCCCCTGCCATCTTCCTCAAGGAGATCATCCTGGTGGACGATGCCAGTGTGGACGACGCCTTGAAAGAGGAGTTGGATGAATATTTGAAGCGGCTGCACATCGTGCATGTGGTGCGGCAGCGGGAGAGAAAGGGCCTGATCACCGCTCGGCTACTGGGAGCCTCGGTGGCCACCGGAGACATCCTCACCTTCCTCGACGCTCACTGTGAATGCTTCAGTGGCTGGCTTGAGCCTCTACTGGCCAGGATAGCAGAGAACTACACTGCAGTAGTGAGTCCTGACATCACTACCATTGACCTCAACACTTTTGAGTTTATGAAGCCCTCGCCGTACGGGCAGAACCACAACCGTGGTAACTTCGACTGGGGCCTGTCCTTCGGCTGGGAGAGTCTACCGGACCACGAGAAACAACGGAGGAAGGATGAGACCTATCCTATTAAGACACCGACTTTTGCTGGGGGACTCTTCTCTATCTCCAAGGACTACTTCTATCTCATCGGAAGCTATGATGAACAAATGGAAATCTGGGGCGGCGAGAATATTGAAATGTCTTTCAGAgtgtgGCAGTGTGGAGGTCAGCTAGAAATCATCCCTTGCTCCATCGTGGGTCACGTGTTCCGCACCAAGAGCCCCCACACCTTCCCCAAGGGCACCCAGGTGATCGCACGCAACCAGGTGCGGCTGGCCGAGGTCTGGATGGACGACTACAAGGAAATCTTCTACCGGCGCAACCAGCAAGCCGCCCAGTTGGCCAAAGACAGGGCCTTCGGAGACGTCGGGCGTCGTGTGGACCTCCGGGAGCGGCTGCAGTGCAAGAGCTTCTCCTGGTATTTGAAAAATGTGTATCCAGAGGTCTTCATGCCTgatctcaacccgctccactttGGCTCGGTGAAAAATGTAGGTAAAGACTCGTGTCTGGATGCAGGGGAGAACAACGAGGGAGGGAAACCGCTGATCTTGTATCCATGCCACGGCCTCGGAGGAAACCAGTATTTTGAGTACTCGACCCATCATGAGATCCGGCACAACATTCAGAAGGAGTTGTGTTTGCATGGGACGGATGGAGCcgtgaagctggaagactgccAGTATAAAGGCCGCAATACGTTTGTAGGAGCAGAACAGAAGTGGGAGTTAAGGGAGAACCAGTTATTCTACATCCCAGGATGGAACCTGTGTCTGAGTGCTCGTCATGAGCACCCCTCGTTGGTGGCCTGTAACCCCTCAGACAGATACCAGCTGTGGCTCTACGTCTGACTACAGGACACACATGGTGGACGATGTGTGCCTTGGTATCCTAGGACCATTAGAACAAGTAGCAATTGGCGTACATTTTTGTTACGTTTTATTATCGAAgttgaatttgtatttatttttatacgTAGAAGAACTGCTGCTGGAAAGTTTGCGATTTTTGAGGAGAACGTGACCTCGGGAAGGAAGCGTTCAAACTGATACTAAAGACTGTTTGTTTtactcctttaaaaaaaaaaaaaatcatgattTGGGTAAAGGAATTGTTTTTCTTGTCTTACACGCCAAATGCTCTCTGTAGATTGACGGAGGTAGCTAGGACTGTGGAAAGACTTTGGATGGATACTGAATGAAGAGAGATTTCTTTGAAGAATACGTCTTTTTTTTATATAGTGTGTACTTCGGCGGGAAATCAACATTACATTTTATGTAATTACCAAGGTTTGTTCTTTATTGCCCACACTGAATAATTTATTAATATAAATGTGAAAACCAACAACAATGGACTGTCAAATAATGCAGTAGTGCACTTGCCTCTTGCACAAACTGAATAACTTCGATGTTATACACCAAAGACtaatcaagtttttttttttttttttttctattaaagacatgctccagaa

Function

symbol description
galnt3 Orthologous to human GALNT3 (polypeptide N-acetylgalactosaminyltransferase 3).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958860.1 False 2803 mRNA 0.49 11 15990139 15999413
XM_036958861.1 True 2813 mRNA 0.49 11 15990139 16000472

Neighbor

gene id symbol gene type direction distance location
LOC110501489 LOC106581797 coding downstream 32640 15946465 ~ 15957499 (-)
xirp2b LOC106586198 coding downstream 120094 15837019 ~ 15870045 (-)
b3galt1b LOC106581793 coding downstream 164918 15684423 ~ 15825221 (-)
cers6 cers6 coding downstream 344510 15623457 ~ 15645629 (-)
nostrin nostrin coding downstream 371458 15614412 ~ 15618681 (-)
ttc21b ttc21b coding upstream 2075 16002547 ~ 16021067 (-)
LOC110501493 LOC106581799 coding upstream 45051 16045523 ~ 16088614 (-)
LOC110501500 LOC106581805 coding upstream 540783 16541255 ~ 16596674 (-)
LOC110501502 tbr1 coding upstream 621353 16621825 ~ 16626574 (-)
LOC110501503 tank coding upstream 647422 16647894 ~ 16654144 (-)
G1781526 NA non-coding downstream 24154 15964004 ~ 15965985 (-)
G1781449 NA non-coding downstream 98414 15828499 ~ 15891725 (-)
G1781260 NA non-coding downstream 193483 15785021 ~ 15796656 (-)
G1781203 NA non-coding downstream 299972 15689789 ~ 15690167 (-)
G1781192 NA non-coding downstream 312113 15672223 ~ 15678026 (-)
G1781564 NA non-coding upstream 59504 16059976 ~ 16060205 (-)
G1781567 NA non-coding upstream 65733 16066205 ~ 16066526 (-)
G1781570 NA non-coding upstream 74054 16074526 ~ 16074811 (-)
G1781607 NA non-coding upstream 104717 16105189 ~ 16105649 (-)
G1781715 cobll1 non-coding upstream 148235 16148707 ~ 16151986 (-)
G1781137 lrp2 other downstream 421605 15567503 ~ 15568534 (-)
G1778224 NA other downstream 2659644 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 2817160 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 3365445 12620582 ~ 12624860 (-)
LOC110501514 dapl1 other upstream 1056650 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 1869057 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 3175095 19175567 ~ 19179266 (-)
G1785753 NA other upstream 3320716 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 3655810 19655763 ~ 19666201 (-)

Expression


Co-expression Network