ttc21b (ttc21b)


Basic Information

Item Value
gene id ttc21b
gene name ttc21b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16002547 ~ 16021067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579091.2
ATTGTTAAACCAATGATTTTCAACTTCATCTACAATTTAAAAATGGCGGCGGTGGTTGTCAAGTAAACGAAAGACGCTTACTGGTGTTTGTAAGATGGCAAAAAATGTAGCTATAATCGGTTTCTATCTTGCCTTTTAAGAGTACATGTGACCGCAGTATTCAGTTAAACATTTAAGGTCTATCTCATTGCTGCAGTTTGAGGTGAAACATTATGGCAGAAGTGGAGGACGAAGAGTCGATGCTGGCCTTGATCAACTACTATTGCCACGAGAAGTATTTCAATCATGTATTAAATGCTGCAGCTGTGGCACAGAGGAAATTCAGCAATGATCCAATCTTCAGCTTTTTCCATGCCTACGGCACCCTGATGCAAGATCAAATTCAGGAAGCCATCCATGAGTTTGAGACAATAAAAGACAGAAGAGATATGTCCCTCTGTACATTCATGGCTCTTGTTTTTGCTGAAAAGAAAAGGCCAAACCCAGATCGAGATGTCATTCAGGAACTGGATGCCAAGGTGAAAGAGGACCGTAAAAGTGCAACACCTAAGGGTCTCTACTATGCTGGGATGTTCCTCTGGCTTCTGGGACGAAATGACAAAGCAAGGGAATACATAGAGAGGATGATCAAAGTCTCTAATAATGGTTCCCGAGAAGGGATTATCCTAAAAGGCTGGATAGATCTGACCTCTGGTAAGGATGCATATGCCAAGAAGGCTGGGAAATACTTTGACGAAGGCCTGAAAGAGAAAGCAGATGTTTTTGCTCTGATGGGAAAGGCACATTACTATGAGTATCGGCATAATTATTCTGGAGCATTGGAGACAGTCAACCAAGTGATTGTTAGTTTCCCTGGGTTCCTTCCTGCCTTTATCAAGAAGATGAAGCTTCTATTGACCCTGCAGGACTGGGAGCAAACTGTAGATGCAGCACAGAGGCTCTTGCAGAAGGATAAAAACAACCTAGAAGCCCTGAGAATGCTCGCTCTTCACTCCTTATGCAGAGAGGGGGACATCACAGAGTCATTAAACATGCTCTCAAGTCTCGTCAGCAACTTGGACGTCCAAGAGCCTCACAGCCCAGACCTTTTCTACAGGATGTCCTTGGCTTTCACACGGGTGTGTGGAAGAAATGAGAAAGTGATTCAGCAGACTCACATCATGGTGGACAGAGCCTTCTCCCAAGCCCAAGGGGATTCTGATCTGGCCACAGAGCTGGGCTACCAGTTGGTTCTGCAGGGAAGAATCAAAGAGGCTATGAAGTGGTACAAGACTGCCATGACTCTGGATGAAACAAGTGTCTCAGCTTTGACAGGTATTATCAGGTGCCAGCTGATCGAGGGAAACTTGGAGGATGCAGAGCAACAGCTGGAGTTTCTCACAGAGATCCAACAGTCTATTGGGAAATCAGGGGAGCTGCTGTACCTGCGCGCCATGCTGGCTGTGAAGAAACGCAGGTCACAGGATGAGGTCACCAACCTGCTGAATGATGCTGTGGACACTCACTTCTCCACACTGCAGGGCCTGCCGCTGGGGGTGGACTACTTTGAGAAGCTCAACCCTGACTTCCTGCTGGAGATCGTCAAGGAGTACATAGCACTCTGTCCTGCTAAGCCTCCAGCCCAGGGCCAGCCTCCTGCCCCTCAGCTCCAACACTGTGCCTCTGTGTTGGACACTGTGGTCAAGATAGTACCTGGACTCCTACAAGGTGTCTTCCTATTGGCCAAAGTTAGGTTTCAGTCTGGTGACATTGACTCTGCTCAGAGCAGCCTCCAACACTGCCTGGACCAGTGTCCCTCCCATGCTGAGGCCCACCTGCTCATGGCACAGATCCACCTCTTACAAGGCAACTACAAGCTCTCCTCCCAGTCTCTGGAGCTTTGCCTCAGTCACAACTTTGCGGTCCGAGAGCACCCTGTGTATCACCTTATAAAGGCCCAGGCCCAGAAGAAGATGGGAGAGCTCCAAGAGGCCATCCAGACTCTGCAGATGGCCATGATCCTGCCGGGGGTCCGCAGGGCCGGTGCCTCAGCCAAATCCAAGAACAAGAAGGTGGAGCTGAGCTCTGCTGACTGTGTGTCCGTGTTCCTTGAACTCGCCGAGGCCCTCTGGCTCAACGGAGAACAGCACGAAGCCGCCAAAGTGATGCAAGACGCCATCAACGAGTTCTCGGGTACTCCTGAGGAGCTGCGTGTCACCATCGCCAATGCTGACCTGGCTCTGCTGCGTGGCGACACCGAGCTTGCCCTGAGCATGCTCAGAAACATCACCCCTGAGCAGCCCTACTATATCCAGGCCAAGGAGAAGATGGCCGACATATATCTGACTCACAGGAAAGAGAAGCGCCTTTATGCCAGTTGTTACAGAGAATTAGTAGAGAAGCTGCCGAGTCCTCATACATATCTTTTACTTGGGGATGCTTATGTGAATATCCAAAAGCCAGAGAAGGCCATTGAGATCTACGAACAGGCTCTGAAGAAAAACCCCAAAGATGGAGCTCTGGCCAGCAAGATTGGGAAAGCTCTTGTCAAGACTCACAATTACGTCAAGGCAATCAATTACTATGAAGCTGCTCTGAAGACTGAGCAGCAGAACTTCCTGCGATATGACCTGGCTGAACTGCTAATGAAGATGAGACAGTACGAGAGGTGCGAGAAAGTTTTACAAGAGGCTCTCGCCCATGACCCAGTAAATGAGCTGCCGTTGCTAACCGATGATTGTCGCTATCTGGTCCTGTTGGCCAAGATCCAAGGCAAGGTTGACAAAAACGAGGATGCTTTACTTTCCTTGCAGCGAGCCCGGGATGTGCAGGCCAAGGTGTTGAAGCGTGTGCAGTTGGAGCAGCCAGACGCTGTCTCCATGCAGAAGCAGCTCGCTGCAGAGATCTGTGGCGAGATCGCTAAACACTACACGAGTCTTAGAGGCTATGAGAGAGCAGTGAAATTCTACAAAGAAGCTCTTGTCTATTGTGAGAGTGATGGCAAGGTGATGCTGGAGCTGGCGCGGTTGTACCTCACTTTAGATGATGTGGATGGCTGCCAACAGCAATGCAGTGTCCTTCTGAAGAGTGACCAGGTCAATGAAGATGCAACACTGATGATGGCTGACCTGATGTTCAGGAAGCAGGACTATGAGCAAGCCGTTTTCCACTTTCAGCAGCTACTGGAGCGCAAACCAGACAACTACCCAACGCTGTCACGTCTAATCGACCTGCTGAGGAGAGCTGGGAAGTTAGAGGAAGTTCCCAGGTTTCTGGAGATGGCTGAAAAACATTCCTCCAGGGCAAAGTTTGACCCTGGGTTTAACTACTGCAAAGGACTTTATCTGTGGTACACAGGTGAACCCAATGATGGGTTGCGACACTTCAACAAGGCACGGAAAGACAACGACTGGGGTCAGAATGCTGTGTACAACATGATTGAGATCTGTCTTAACCCAGACAATGACACCATGGGAGGAGAAGTCTTTGAGAACCTAGATGGTGACATGGGGAACTCTACTGAGAAGCAGGAGTCAGAGCAGCTCGCCGTGAGAACAGCAGAGAAGCTCCTGAAGGAGTTAAAGCCCCAGACAGCCGGTGGACACGTCCAACTACGGATCCTAGAGAACTACTGCTTTCTGGCCACCAAGCAGAAAGCCAACGTCGAGAAAGCCCTGAATGTTTTCACAGAGATTGCAAATAATGAGAAGGACCATGTGCCTGCACTGCTAGCCATGGCGACAGCCTACATGATTCTCAAACAAACCCCTCGAGCCAGGAACCAGCTCAAACGCGTAGCTAAGATGAACTGGAGCATTGTTGACGCTGACGAGTTTGAGAAGAGCTGGCTGCTCCTGGCCGACATCTACATCCAGTCAGGGAAATATGACATGGCCGGGGACCTCTTGAAGAGGTGCCTTCGTCATAATAAGTCATGTTGTAAAGCTTATGAATACATGGGCTACATTATGGAGAAGGAGCAGGCATTCCGAGATGCAGCGCTGAACTATGAAATGGCTTGGAAATATGGCAATCAAACGAACCCCACTATAGGATACAAGCTTGCATTCAACTACCTGAAAGCAAAGAGGCATGTTGATGCCATAGATGTCTGTCATAAGGTTTTGGATGCTCACCCCAATTATCCAAAGATGAGGAAGGACATCTTGGACAAAGCTCGGGCAGCTTTGCGGTCTTAACATAAATGTTTTAgcgagagagtgcagtgtgtgggTGTATTATTGCTCAATCTTTTTTGATGTGTTTTGTTAACAAGCATTATTACTTGGGTAAGTATTTGGATGTAATTATAAATGGAATtttggagggatgagagagtgcTTTTTATAAACGTGATTACAATACAAAACA
>XM_036958862.1
TTTAGTCTATCTTCattactgtactgtctttaatgAAACTGTGGAAGGACCGTCTTCCGTTTGCCAACGAACGAAATTACACTACTCGACCactggtcgtcactagttaccacagccacaaagtcaaagaccccgcctatttctacaatttatcttcttcaAATTGTTGTTTTCATGAATTGTTATAGACATTTTTACTTTGTGGTAACTAGTGTAAACCTCGACCATTTAGAATCGGTTTAAGGGTCACAGATTGAAGATGGGAACCTAGGTCACTTTTATCCAAACGAGAAAACACCACAAAGTAGCTACAAGCCTCTTCTCACAGCCTTTGTGCCAAAGGGCCACAAGCGCGGCATGCGGGTGGGTTTGAGGTGAAACATTATGGCAGAAGTGGAGGACGAAGAGTCGATGCTGGCCTTGATCAACTACTATTGCCACGAGAAGTATTTCAATCATGTATTAAATGCTGCAGCTGTGGCACAGAGGAAATTCAGCAATGATCCAATCTTCAGCTTTTTCCATGCCTACGGCACCCTGATGCAAGATCAAATTCAGGAAGCCATCCATGAGTTTGAGACAATAAAAGACAGAAGAGATATGTCCCTCTGTACATTCATGGCTCTTGTTTTTGCTGAAAAGAAAAGGCCAAACCCAGATCGAGATGTCATTCAGGAACTGGATGCCAAGGTGAAAGAGGACCGTAAAAGTGCAACACCTAAGGGTCTCTACTATGCTGGGATGTTCCTCTGGCTTCTGGGACGAAATGACAAAGCAAGGGAATACATAGAGAGGATGATCAAAGTCTCTAATAATGGTTCCCGAGAAGGGATTATCCTAAAAGGCTGGATAGATCTGACCTCTGGTAAGGATGCATATGCCAAGAAGGCTGGGAAATACTTTGACGAAGGCCTGAAAGAGAAAGCAGATGTTTTTGCTCTGATGGGAAAGGCACATTACTATGAGTATCGGCATAATTATTCTGGAGCATTGGAGACAGTCAACCAAGTGATTGTTAGTTTCCCTGGGTTCCTTCCTGCCTTTATCAAGAAGATGAAGCTTCTATTGACCCTGCAGGACTGGGAGCAAACTGTAGATGCAGCACAGAGGCTCTTGCAGAAGGATAAAAACAACCTAGAAGCCCTGAGAATGCTCGCTCTTCACTCCTTATGCAGAGAGGGGGACATCACAGAGTCATTAAACATGCTCTCAAGTCTCGTCAGCAACTTGGACGTCCAAGAGCCTCACAGCCCAGACCTTTTCTACAGGATGTCCTTGGCTTTCACACGGGTGTGTGGAAGAAATGAGAAAGTGATTCAGCAGACTCACATCATGGTGGACAGAGCCTTCTCCCAAGCCCAAGGGGATTCTGATCTGGCCACAGAGCTGGGCTACCAGTTGGTTCTGCAGGGAAGAATCAAAGAGGCTATGAAGTGGTACAAGACTGCCATGACTCTGGATGAAACAAGTGTCTCAGCTTTGACAGGTATTATCAGGTGCCAGCTGATCGAGGGAAACTTGGAGGATGCAGAGCAACAGCTGGAGTTTCTCACAGAGATCCAACAGTCTATTGGGAAATCAGGGGAGCTGCTGTACCTGCGCGCCATGCTGGCTGTGAAGAAACGCAGGTCACAGGATGAGGTCACCAACCTGCTGAATGATGCTGTGGACACTCACTTCTCCACACTGCAGGGCCTGCCGCTGGGGGTGGACTACTTTGAGAAGCTCAACCCTGACTTCCTGCTGGAGATCGTCAAGGAGTACATAGCACTCTGTCCTGCTAAGCCTCCAGCCCAGGGCCAGCCTCCTGCCCCTCAGCTCCAACACTGTGCCTCTGTGTTGGACACTGTGGTCAAGATAGTACCTGGACTCCTACAAGGTGTCTTCCTATTGGCCAAAGTTAGGTTTCAGTCTGGTGACATTGACTCTGCTCAGAGCAGCCTCCAACACTGCCTGGACCAGTGTCCCTCCCATGCTGAGGCCCACCTGCTCATGGCACAGATCCACCTCTTACAAGGCAACTACAAGCTCTCCTCCCAGTCTCTGGAGCTTTGCCTCAGTCACAACTTTGCGGTCCGAGAGCACCCTGTGTATCACCTTATAAAGGCCCAGGCCCAGAAGAAGATGGGAGAGCTCCAAGAGGCCATCCAGACTCTGCAGATGGCCATGATCCTGCCGGGGGTCCGCAGGGCCGGTGCCTCAGCCAAATCCAAGAACAAGAAGGTGGAGCTGAGCTCTGCTGACTGTGTGTCCGTGTTCCTTGAACTCGCCGAGGCCCTCTGGCTCAACGGAGAACAGCACGAAGCCGCCAAAGTGATGCAAGACGCCATCAACGAGTTCTCGGGTACTCCTGAGGAGCTGCGTGTCACCATCGCCAATGCTGACCTGGCTCTGCTGCGTGGCGACACCGAGCTTGCCCTGAGCATGCTCAGAAACATCACCCCTGAGCAGCCCTACTATATCCAGGCCAAGGAGAAGATGGCCGACATATATCTGACTCACAGGAAAGAGAAGCGCCTTTATGCCAGTTGTTACAGAGAATTAGTAGAGAAGCTGCCGAGTCCTCATACATATCTTTTACTTGGGGATGCTTATGTGAATATCCAAAAGCCAGAGAAGGCCATTGAGATCTACGAACAGGCTCTGAAGAAAAACCCCAAAGATGGAGCTCTGGCCAGCAAGATTGGGAAAGCTCTTGTCAAGACTCACAATTACGTCAAGGCAATCAATTACTATGAAGCTGCTCTGAAGACTGAGCAGCAGAACTTCCTGCGATATGACCTGGCTGAACTGCTAATGAAGATGAGACAGTACGAGAGGTGCGAGAAAGTTTTACAAGAGGCTCTCGCCCATGACCCAGTAAATGAGCTGCCGTTGCTAACCGATGATTGTCGCTATCTGGTCCTGTTGGCCAAGATCCAAGGCAAGGTTGACAAAAACGAGGATGCTTTACTTTCCTTGCAGCGAGCCCGGGATGTGCAGGCCAAGGTGTTGAAGCGTGTGCAGTTGGAGCAGCCAGACGCTGTCTCCATGCAGAAGCAGCTCGCTGCAGAGATCTGTGGCGAGATCGCTAAACACTACACGAGTCTTAGAGGCTATGAGAGAGCAGTGAAATTCTACAAAGAAGCTCTTGTCTATTGTGAGAGTGATGGCAAGGTGATGCTGGAGCTGGCGCGGTTGTACCTCACTTTAGATGATGTGGATGGCTGCCAACAGCAATGCAGTGTCCTTCTGAAGAGTGACCAGGTCAATGAAGATGCAACACTGATGATGGCTGACCTGATGTTCAGGAAGCAGGACTATGAGCAAGCCGTTTTCCACTTTCAGCAGCTACTGGAGCGCAAACCAGACAACTACCCAACGCTGTCACGTCTAATCGACCTGCTGAGGAGAGCTGGGAAGTTAGAGGAAGTTCCCAGGTTTCTGGAGATGGCTGAAAAACATTCCTCCAGGGCAAAGTTTGACCCTGGGTTTAACTACTGCAAAGGACTTTATCTGTGGTACACAGGTGAACCCAATGATGGGTTGCGACACTTCAACAAGGCACGGAAAGACAACGACTGGGGTCAGAATGCTGTGTACAACATGATTGAGATCTGTCTTAACCCAGACAATGACACCATGGGAGGAGAAGTCTTTGAGAACCTAGATGGTGACATGGGGAACTCTACTGAGAAGCAGGAGTCAGAGCAGCTCGCCGTGAGAACAGCAGAGAAGCTCCTGAAGGAGTTAAAGCCCCAGACAGCCGGTGGACACGTCCAACTACGGATCCTAGAGAACTACTGCTTTCTGGCCACCAAGCAGAAAGCCAACGTCGAGAAAGCCCTGAATGTTTTCACAGAGATTGCAAATAATGAGAAGGACCATGTGCCTGCACTGCTAGCCATGGCGACAGCCTACATGATTCTCAAACAAACCCCTCGAGCCAGGAACCAGCTCAAACGCGTAGCTAAGATGAACTGGAGCATTGTTGACGCTGACGAGTTTGAGAAGAGCTGGCTGCTCCTGGCCGACATCTACATCCAGTCAGGGAAATATGACATGGCCGGGGACCTCTTGAAGAGGTGCCTTCGTCATAATAAGTCATGTTGTAAAGCTTATGAATACATGGGCTACATTATGGAGAAGGAGCAGGCATTCCGAGATGCAGCGCTGAACTATGAAATGGCTTGGAAATATGGCAATCAAACGAACCCCACTATAGGATACAAGCTTGCATTCAACTACCTGAAAGCAAAGAGGCATGTTGATGCCATAGATGTCTGTCATAAGGTTTTGGATGCTCACCCCAATTATCCAAAGATGAGGAAGGACATCTTGGACAAAGCTCGGGCAGCTTTGCGGTCTTAACATAAATGTTTTAgcgagagagtgcagtgtgtgggTGTATTATTGCTCAATCTTTTTTGATGTGTTTTGTTAACAAGCATTATTACTTGGGTAAGTATTTGGATGTAATTATAAATGGAATtttggagggatgagagagtgcTTTTTATAAACGTGATTACAATACAAAACA

Function

symbol description
ttc21b Acts upstream of or within gastrulation. Predicted to be part of intraciliary transport particle A. Is expressed in Kupffer's vesicle; forerunner cell group; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 4 and nephronophthisis 12. Orthologous to human TTC21B (tetratricopeptide repeat domain 21B).

NR:

description
tetratricopeptide repeat protein 21B-like

GO: NA

KEGG:

id description
K19673 TTC21B, IFT139B; tetratricopeptide repeat protein 21B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579091.2 False 4350 mRNA 0.49 29 16002547 16020650
XM_036958862.1 True 4522 mRNA 0.49 30 16002547 16021067

Neighbor

gene id symbol gene type direction distance location
galnt3 galnt3 coding downstream 2075 15990139 ~ 16000472 (-)
LOC110501489 LOC106581797 coding downstream 45048 15946465 ~ 15957499 (-)
xirp2b LOC106586198 coding downstream 132502 15837019 ~ 15870045 (-)
b3galt1b LOC106581793 coding downstream 177326 15684423 ~ 15825221 (-)
cers6 cers6 coding downstream 356918 15623457 ~ 15645629 (-)
LOC110501493 LOC106581799 coding upstream 24456 16045523 ~ 16088614 (-)
LOC110501500 LOC106581805 coding upstream 520188 16541255 ~ 16596674 (-)
LOC110501502 tbr1 coding upstream 600758 16621825 ~ 16626574 (-)
LOC110501503 tank coding upstream 626827 16647894 ~ 16654144 (-)
LOC110501509 tanc1 coding upstream 847256 16868323 ~ 17049285 (-)
G1781526 NA non-coding downstream 36562 15964004 ~ 15965985 (-)
G1781449 NA non-coding downstream 110822 15828499 ~ 15891725 (-)
G1781260 NA non-coding downstream 205891 15785021 ~ 15796656 (-)
G1781203 NA non-coding downstream 312380 15689789 ~ 15690167 (-)
G1781192 NA non-coding downstream 324521 15672223 ~ 15678026 (-)
G1781564 NA non-coding upstream 38909 16059976 ~ 16060205 (-)
G1781567 NA non-coding upstream 45138 16066205 ~ 16066526 (-)
G1781570 NA non-coding upstream 53459 16074526 ~ 16074811 (-)
G1781607 NA non-coding upstream 84122 16105189 ~ 16105649 (-)
G1781715 cobll1 non-coding upstream 127640 16148707 ~ 16151986 (-)
G1781137 lrp2 other downstream 434013 15567503 ~ 15568534 (-)
G1778224 NA other downstream 2672052 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 2829568 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 3377853 12620582 ~ 12624860 (-)
LOC110501514 dapl1 other upstream 1036055 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 1848462 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 3154500 19175567 ~ 19179266 (-)
G1785753 NA other upstream 3300121 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 3635215 19655763 ~ 19666201 (-)

Expression


Co-expression Network