ifih1 (mda5)


Basic Information

Item Value
gene id ifih1
gene name mda5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16501461 ~ 16519607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578585.2
TGGAAACCAGATTGAAGAGGGAGAAACGAAACTGAAAGTGCTTGCATTGACGGGAATAGAATCTCGATTGACTCATGTTGATTTAACTATTTGCACTGCAGTTAGCCTACTCTTCCGTGTGCTTTTCTACGTGACTCAGGACTTCGATGTGACCAGGCATTTCGTGTATATCTCTGATCAACCTGATCGATGGCCGCTGACAAAGATAACACCGCCAACATCAGTCTGATTGAGGACTTCAGACCTAGGCTGCGGAAACTCATTGAAATCGAGTTTGTACTGGATCACCTGAACTTCTTAGACAATGACAACAAGGACTTGATCCGAACTAAGGCGAGAAAAGAGAGCAATCTAAAGGCAGTGGATCTACTTATTGATACAATCATCAGGATCCGGCCACTTCCGAAAGATTTTAGCTGAATGTCAAAACCGAGGAAATATGGGTGGTGCTCGTGAACTGCTCAGGAGAATCGTGAGATTCCCGCCCGGATGGTTCTCCACCTTCTTGAAGGCCTTACAGGTCACTGAACACAATGACCTGTGTAAAGAATTGACAGGGGAGTCACCTGGTGATAACTTGATAGATGAGCCAGGTGTCCTGATGGCTGTGAATGAAGCTCCAGGGAATGTGGATCCAATGGTGGAGGAGGGTCCTGTAGAAGCAGCTGGGAAATCTTTTCTCCCAGAGCAGGAGACATTGGATAGCAGTGTGACCAGCATGCATCTGGATGAACCTTCAGAGGCTGACTCAGAAATTGCAGACCTATATAGTGGCACAGAAGAACCAATGGAAAATGGGAAACCGGAAAATAGCTTGGATCTCTCAATGTCAGGCTGTATTGCCCCTGCTGCTGAAAGCCCCCCAAAAGCTGTCATTGTTCTTCGAGATTATCAGATGGACGTGGCCAGGCCCGCCTTGGAGGGAAAAAACATCATCATATGCCTCCCGACAGGAAGTGGTAAAACCAGAGTTGCTGTCTATATTACCAAAGAACATCTGGACAGCAGGAGGAAAGAGGGCCGACCAGGGAAAGTGGTCGTCTTGGTTAACAAGGTGCCCCTGGTCGAGCAGCATTACTCCACAGAGTTCTGGAAGTTccttaaaaacaaatacaaagtTGAGAGGGTCAGTGGGGACTCCCAGCTCAAAATCTCCTTCACAGACATTGTCCAGAAAAACGATATTGTCATCTGTACAGCCCAGCTTCTGGAGAACTACTTGGAAAGGGCTCACAGTGGAGATGACGATGGGATTAAACTTTCAGATTTGTCACTAATTGTGATCGATGAGTGCCACCACACACAGAAGGGAGGAGTCTATAACCACATCATGATCCGCTACCTCAAGCAGAAGCACAAGAACGCCAAGTTAAAGAAAGAGCAGAAGGATACAGTGGCCATCCCACAGATCCTAGGCTTGACCGCCTCACCCGGCGTCGGGGGAGCCAAGAAAATTGAAAAAGCAGAAGAGCATATTCTACGAATCTGCGCAAACTTGGACGCATACAAAATAATGACGGGGAACCTTGGGGAAAACAAAAAAGAACCGCACAAAAAAATTGCCACTGCCGAAGAGAGAAAAGAGGATCCCTTTGGCGATGTTCTCAAAGGAGTCATGAATGCCATTCACATCCATGCTGAACTGAACCCTACCTGTGACCTAGGCACCCAGAACTATGAGCAGTGGGTGGTCCAGAAAGAACAAAATGCTGCAAAAGAGGAGAATCAAAAAGTGCGAGTTTGTGCTGAGCATCTACGGCAGTACAACGAGGCCCTGTACCTAGGCAAAACCATCCGCATGTGGGATGCCTTCAGCTTCCTGGACAAATACTTTGACGAGGAGCTGAAGAAGAAAGTGGCCCCAGAGGACGAGGAGGCCATCATTAAGACTGATACAGAGCGATTCCTTTTCACACTCTTTAAAGATAGCAAAGTGAAACTGCAGGAGTTGGCTAAGCTTCCCCAGTATGAAAATAATAGCCTAGCTAAGCTGAGAACCAAAATCCTGCATGAATTTACATCTAGAGAAAAGGCTAGAGGGATCATTTTTACGAAAACCCGTCGCAGTGCCATCGCATTAGCTCAATGGGTTCAGGAGAACTCCAAGTTCGAGGAGGTCGGAGTAAAAGCTTGCCATGTGATTGGAGGAGGAGGCCAGAGTGTCGTGAAACCAATGACCGCTGCAGAACAAAGGGATGTTTTGAACAAGTTTCAGAATGCGGAGATCAACTTGCTGATTGCAACAACAGTGGCTGAAGAGGGTCTGGACATAGCAGCATGTAACTTTGTGATACGATATGAGCTTGTGACCAATGAGATCGCTATGATTCAGGCCCGAGGCAGAGGCAGAGCTGAGGACAGTAGTTATACCTTAGTGGCAGGGGAGGGTTCTGGGGTCGCTGAACGAGAGAGTGTCAACGAGTACCGTGAGAAGATGATGAGCAAAGCTATCGATAAAGTCAAGAAATTAGATCAAGAGGAATATGAAAAGAGGATTAAAGAATTCCAGATTCAGGCGATCATGGAGGAAAGAGTGCGAACAACCAAGAAGAAGCAGAAAGGAATGAAAAAGGAGAGCCCGTCCAAAGTGAAGTTCAGTTGTAGAAGCTGCAACAAACCAGTCTGCTCAGGGGAAGATGTTGAAATCATTGAAAATATGCACAGAGTCAACGTAACACCCCAATTTAAGGAACTTTTCATTCAAAGAGAAAACACCTCACTTGTTAAAAGGCTACTGGACTACGAGTCCAATGGTTTCATAGCATGCAAAGACTGTGGACAGAGGTGGGGTTCAATGATGCTCTACCGTGGAATCGAGTGTCCCTGTCTTCACGTCAAGAACTTCCTGGTGACGTATGATGAAAAGAGGAAGAACGTCAACAAGTGGAGCGAGCTGGGTATCCAGTTACCTGCCTTTGACTATGCTGAACACGCTCGATCTGTGGCCGAAAGCTCAGAGGATGAAGAATCAATGTAATAATATGGTAACGACAAGGATTTTTTTGCGAAAAGTAAGAAGCAAAACAAATGCATGCAGCTCCGTGTATCTGTGGTAGTTGGATTGAATAAATCAGCCTTACATTTTCAGTTGAAGTTGCACACGTGCAAGCTTTTACAATGTGACTTTGCTCATATCTTTTTAATTGCGAAAGCCGTCATTGATGCAGTGTGATACGGGGGGTTTCAGGTGTCTTACAAGCTGCTGCTTTTAATTGTCATGAATGAATCATTGTATTATTCAATTTATTGTCAATGGCTATCAGTAAATGTTGAATCAAATGAATAATGTGCTTTTCTGATTGAAAAAAAAGATTGTGGAGAAAACATGACGTTACTATGTGCCCTAGATATCTCCATGCTTAATCACTGATTGGGGAAAACGGGTTCAGCAGGAAGAGCGATTACTAGTTGAATATGGTGTGCAAacattttcttttaaaaacacTTCTAATCTGTGCTCCTAGACGAGCTGTTGTTGTGTCAGACACCGCATACGTCATGAATGGGTCAAACTAAAGATGAAATTGAACTTCtcgacacacttcctctcccttgGGATCCGCTGGTGTTTTCCCGGACCCTATGGTCCGCACCGGTCAGCACACGTTTATGTTTAGATCTAACACACTAGACAGGtgggttttttttgtgtgtattgtcGGTAAATTCACTTATCACTTTGCCCAATGTCACAGGTGTGACCTGTCCAGGGGTATGGTGATGTGTTGTCCTGGCTACTGTGACTTGATAGTTCAGGGAGTAATAAAATGACAAAGTATGGGTGCCCACGTGATTACTTCTTTCTTCTTCATTGTTTAGTTTAATCCTAAATTCATAGCTTTCAAAATATTTCCATAATACAAATGTCTGCAATGTGTAAAGTGTATGAGACAATAAATTGAGCAGGCAATTTGCCTCAATGTG
>NM_001195179.1
ACTTCGATGTGACCAGGCATTTCGTGTATATCTCTGATCAACCTGATCGATGGCCGCTGACAAAGATAACACCGCCAACATCAGTCTGATTGAGGACTTCAGACCTAGGCTGCGGAAACTCATTGAAATCGAGTTTGTACTGGATCACCTGAACTTCTTAGACAATGACAACAAGGACTTGATCCGAACTAAGGCGAGAAAAGAGAGCAATCTAAAGGCAGTGGATCTACTTATTGATACAATCATCAGGATCCGGCCACTTCCGAAAGGTTGGTTCAGGGAGTTTGTGGATGCACTGTCAGCTGGGGGTTGTAAACATGCTGCCACCTACGTGGAGGATAGCCCTCCATGTCCTGCTCTGGAGGCAGAGAATGACAACTGCGTCAGACTAATTGAACTTCTGTCGCCAAGTCTTTTGGGGATGAAGACTACTGATGTTTGCTGGGACTGTTTTTCTAAAGGTATTCTCACCGCAGAGGACCGTGAAATTATTTTAGCTGAATGTCAAAACCGAGGAAATATGGGTGGTGCTCGTGAACTGCTCAGGAGAATCGTGAGATTCCCGCCCGGATGGTTCTCCACCTTCTTGAAGGCCTTACAGGTCACTGAACACAATGACCTGTGTAAAGAATTGACAGGGGAGTCACCTGGTGATAACTTGATAGATGAGCCAGGTGTCCTGATGGCTGTGAATGAAGCTCCAGGGAATGTGGATCCAATGGTGGAGGAGGGTCCTGTAGAAGCAGCTGGGAAATCTTTTCTCCCAGAGCAGGAGACATTGGATAGCAGTGTGACCAGCATGCATCTGGATGAACCTTCAGAGGCTGACTCAGAAATTGCAGACCTATATAGTGGCACAGAAGAACCAATGGAAAATGGGAAACCGGAAAATAGCTTGGATCTCTCAATGTCAGGCTGTATTGCCCCTGCTGCTGAAAGCCCCCCAAAAGCTGTCATTGTTCTTCGAGATTATCAGATGGACGTGGCCAGGCCCGCCTTGGAGGGAAAAAACATCATCATATGCCTCCCGACAGGAAGTGGTAAAACCAGAGTTGCTGTCTATATTACCAAAGAACATCTGGACAGCAGGAGGAAAGAGGGCCGACCAGGGAAAGTGGTCGTCTTGGTTAACAAGGTGCCCCTGGTCGAGCAGCATTACTCCACAGAGTTCTGGAAGTTccttaaaaacaaatacaaagtTGAGAGGGTCAGTGGGGACTCCCAGCTCAAAATCTCCTTCACAGACATTGTCCAGAAAAACGATATTGTCATCTGTACAGCCCAGCTTCTGGAGAACTACTTGGAAAGGGCTCACAGTGGAGATGACGATGGGATTAAACTTTCAGATTTGTCACTAATTGTGATCGATGAGTGCCACCACACACAGAAGGGAGGAGTCTATAACCACATCATGATCCGCTACCTCAAGCAGAAGCACAAGAACGCCAAGTTAAAGAAAGAGCAGAAGGATACAGTGGCCATCCCACAGATCCTAGGCTTGACCGCCTCACCCGGCGTCGGGGGAGCCAAGAAAATTGAAAAAGCAGAAGAGCATATTCTACGAATCTGCGCAAACTTGGACGCATACAAAATAATGACGGGGAACCTTGGGGAAAACAAAAAAGAACCGCACAAAAAAATTGCCACTGCCGAAGAGAGAAAAGAGGATCCCTTTGGCGATGTTCTCAAAGGAGTCATGAATGCCATTCACATCCATGCTGAACTGAACCCTACCTGTGACCTAGGCACCCAGAACTATGAGCAGTGGGTGGTCCAGAAAGAACAAAATGCTGCAAAAGAGGAGAATCAAAAAGTGCGAGTTTGTGCTGAGCATCTACGGCAGTACAACGAGGCCCTGTACCTAGGCAAAACCATCCGCATGTGGGATGCCTTCAGCTTCCTGGACAAATACTTTGACGAGGAGCTGAAGAAGAAAGTGGCCCCAGAGGACGAGGAGGCCATCATTAAGACTGATACAGAGCGATTCCTTTTCACACTCTTTAAAGATAGCAAAGTGAAACTGCAGGAGTTGGCTAAGCTTCCCCAGTATGAAAATAATAGCCTAGCTAAGCTGAGAACCAAAATCCTGCATGAATTTACATCTAGAGAAAAGGCTAGAGGGATCATTTTTACGAAAACCCGTCGCAGTGCCATCGCATTAGCTCAATGGGTTCAGGAGAACTCCAAGTTCGAGGAGGTCGGAGTAAAAGCTTGCCATGTGATTGGAGGAGGAGGCCAGAGTGTCGTGAAACCAATGACCGCTGCAGAACAAAGGGATGTTTTGAACAAGTTTCAGAATGCGGAGATCAACTTGCTGATTGCAACAACAGTGGCTGAAGAGGGTCTGGACATAGCAGCATGTAACTTTGTGATACGATATGAGCTTGTGACCAATGAGATCGCTATGATTCAGGCCCGAGGCAGAGGCAGAGCTGAGGACAGTAGTTATACCTTAGTGGCAGGGGAGGGTTCTGGGGTCGCTGAACGAGAGAGTGTCAACGAGTACCGTGAGAAGATGATGAGCAAAGCTATCGATAAAGTCAAGAAATTAGATCAAGAGGAATATGAAAAGAGGATTAAAGAATTCCAGATTCAGGCGATCATGGAGGAAAGAGTGCGAACAACCAAGAAGAAGCAGAAAGGAATGAAAAAGGAGAGCCCGTCCAAAGTGAAGTTCAGTTGTAGAAGCTGCAACAAACCAGTCTGCTCAGGGGAAGATGTTGAAATCATTGAAAATATGCACAGAGTCAACGTAACACCCCAATTTAAGGAACTTTTCATTCAAAGAGAAAACACCTCACTTGTTAAAAGGCTACTGGACTACGAGTCCAATGGTTTCATAGCATGCAAAGACTGTGGACAGAGGTGGGGTTCAATGATGCTCTACCGTGGAATCGAGTGTCCCTGTCTTCACGTCAAGAACTTCCTGGTGACGTATGATGAAAAGAGGAAGAACGTCAACAAGTGGAGCGAGCTGGGTATCCAGTTACCTGCCTTTGACTATGCTGAACACGCTCGATCTGTGGCCGAAAGCTCAGAGGATGAAGAATCAATGTAATAATATGGTAACGACAAGGATTTTTTTGCGAAAAGTAAGAAGCAAAACAAATGCATGCA

Function

symbol description
mda5 interferon-induced helicase C domain-containing protein 1

NR:

description
melanoma differentiation associated gene 5

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12647 IFIH1, MDA5; interferon-induced helicase C domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578585.2 False 3924 mRNA 0.45 16 16501461 16519607
NM_001195179.1 True 3117 mRNA 0.47 16 16501601 16518719

Neighbor

gene id symbol gene type direction distance location
LOC110502057 LOC106581803 coding upstream 7010 16444036 ~ 16494451 (+)
LOC110501497 LOC106581802 coding upstream 162941 16328778 ~ 16338520 (+)
LOC110501496 LOC106581801 coding upstream 284254 16152239 ~ 16217207 (+)
LOC110501495 cobll1 coding upstream 349471 16118186 ~ 16151990 (+)
csrnp3 LOC106581794 coding upstream 513343 15922382 ~ 15988118 (+)
LOC110501499 gcg coding downstream 15731 16535338 ~ 16537328 (+)
LOC110501504 NA coding downstream 148884 16668491 ~ 16733286 (+)
LOC110501506 cd302 coding downstream 219933 16739540 ~ 16745332 (+)
LOC110501507 baz2b coding downstream 234715 16754322 ~ 16844200 (+)
LOC110502058 NA coding downstream 327311 16846918 ~ 16864386 (+)
G1782020 NA non-coding upstream 96179 16405002 ~ 16405282 (+)
G1782004 NA non-coding upstream 105136 16396115 ~ 16396325 (+)
G1781986 NA non-coding upstream 114963 16385946 ~ 16386498 (+)
G1781818 NA non-coding upstream 226188 16274832 ~ 16275273 (+)
G1781816 LOC106578716 non-coding upstream 227910 16273298 ~ 16273551 (+)
G1782131 NA non-coding downstream 79925 16599532 ~ 16599874 (+)
G1782137 NA non-coding downstream 85843 16605450 ~ 16605680 (+)
G1782140 NA non-coding downstream 90260 16609867 ~ 16610209 (+)
G1782143 NA non-coding downstream 94857 16614464 ~ 16614726 (+)
G1782144 NA non-coding downstream 95417 16615024 ~ 16621383 (+)
G1781813 NA other upstream 228351 16272389 ~ 16273110 (+)
G1781423 LOC106581799 other upstream 438060 16062757 ~ 16063401 (+)
G1781293 LOC106586198 other upstream 652866 15839604 ~ 15848595 (+)
G1780575 NA other upstream 1067641 15424711 ~ 15433820 (+)
G1780491 NA other upstream 1153795 15291362 ~ 15347666 (+)
G1782390 NA other downstream 486427 17006034 ~ 17041673 (+)
G1783087 NA other downstream 776346 17295953 ~ 17296359 (+)
G1783622 NA other downstream 1222150 17741757 ~ 17742435 (+)
G1783691 LOC106586162 other downstream 1390293 17909900 ~ 17911226 (+)
kalrna LOC106581831 other downstream 1582324 18101519 ~ 18386130 (+)

Expression


Co-expression Network