LOC110501503 (tank)


Basic Information

Item Value
gene id LOC110501503
gene name tank
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16647894 ~ 16654144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579115.2
GGCGGAAGTCTACTAGGCTCGGGGATTCCCCGAGGGAAGTTCCCCAAGCATTATAATGCATGTACAATGAACATTTGTACGAAATACACCACTCCCGCACGTAGTAAATGTAGGCCACCTGAAGAATAAGAACTTGTCGAAGTATCAAAACAATAATTTGGACATATTCGAATGAAGGTTGTGTGATATGTTGCGCCAGGCCCCATGACTGCTGTGTCAGTGATGATTGTGGAGCACACAGCATGGAGAGGAATATTGGAGATCAGCTCAACAAGGCCTATGAAGCTTACCGCCAGGCCTCTATCGAGAGAGACAGCGCCAAAAAGGAACTACAGCAGATGAATGTAAATTATGAACGGCACACTCAGAAACTTCAGAAACAGATAGAAGACCAGCAGCAGTTGATTTCGAAACTCAAAGCTCAGTTGATATCAGCAACTAAGCAACCCTCAGGAGAGGTCATAGGTGAGGCTGCACCTAGAAAACAGGAAGAAGAAACCTTGTCTCCTTCCAAACATCTCTTTGACAACCCAGAAAGCTCCTTGAGGAAGATTCATTACTTGaAGGAAAATATGGAAACTGCTGTGATTGTGTCATCTTCACCACACACAGCACCAGTAGCCAGCAGTTTTGAGACTAAAGATGTTCTTGAAGTGTATCAAGCTCTCCGGGGGAAATTCCAGCAGATACGCACATTAACCCAGAGACAAAAAGATCACCTGAAAAAAATCTACAGAGGAAATGACATGGCAAATGAGCAGCAGTTCTCCATGCCCATTCAGTGTACAGACGTGGCCGTGGAGCAGGCGGAGATGCCCTTCCCTTCAGCCTTGAGGCCAGGGGTCGACCTCCAGCACCCGCCCATGTCCCTGGCATCCCGCGGTGCCAGCCCAGAGGACATGAACCAAGTGGACTCTCTCACCACACTCAGCATCAAGTTCCCCCCCTCCACAGACAGTGAATACGAGTTCCTGAACAGCGCTCTGGAAAAACGCATTGACCTGTCCGTGCCAAGGGCAACAGTCAGCACTGTCCCTGCCGTCATAGAGGTACCGTCTATGGAGCTGGCCATCCCATTCCTGTATCctacctctgtctctcaccctccctccccctccgtGTCGCTCTCACACAAGAGTGTGCGTGGACACCAGCAGCCCCTGTGGCGCCCTGAGCTTTGCAACGCTACTACAGCAACAGCAGCGCAGGCCGTGAGTGCGGAACAGCAACAACAGATGAACAACAACAGCCCTGATATATGTACCTACTGCAACGCGGTAGTTCCCGAAGAGCACATGAACAGCCACCTTTTTACTCATTGCcagagggagagtgaagacagcaATTGACACTAGCAGACATTGGCTGCCCAGTACAACACCTCTAGGGTTGATTCATGGTTAATTCATGTCTTTGTTTCAACACCATGAATAACACGCGCTCTGCTGTATGTCACATGACACTGGCGTTTTGGGACTTGAATCCACTCtcaaacatttatttaatttgtAAGAGGTTAATGGTACATTTTACAGTTTTTGTCTTAAGATATTACTTGGAAATTGCACGTCGATTTACGAAATGATTTTGTACAGTATCGGTCTGAGTGTAATAAAGCAAACATTTAATCTTG

Function

symbol description
tank Predicted to act upstream of or within I-kappaB kinase/NF-kappaB signaling. Orthologous to human TANK (TRAF family member associated NFKB activator).

NR:

description
LOW QUALITY PROTEIN: TRAF family member-associated NF-kappa-B activator-like

GO: NA

KEGG:

id description
K12650 TANK; TRAF family member-associated NF-kappa-B activator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579115.2 True 1633 mRNA 0.48 9 16647894 16654144

Neighbor

gene id symbol gene type direction distance location
LOC110501502 tbr1 coding downstream 21320 16621825 ~ 16626574 (-)
LOC110501500 LOC106581805 coding downstream 51220 16541255 ~ 16596674 (-)
LOC110501493 LOC106581799 coding downstream 559280 16045523 ~ 16088614 (-)
ttc21b ttc21b coding downstream 626827 16002547 ~ 16021067 (-)
galnt3 galnt3 coding downstream 647422 15990139 ~ 16000472 (-)
LOC110501509 tanc1 coding upstream 214179 16868323 ~ 17049285 (-)
LOC110501514 dapl1 coding upstream 402960 17057104 ~ 17063550 (-)
LOC110501511 pkp4 coding upstream 410191 17064335 ~ 17178344 (-)
LOC110501516 LOC106586173 coding upstream 580251 17234395 ~ 17241046 (-)
LOC110501517 LOC106581816 coding upstream 587564 17241708 ~ 17253527 (-)
G1782702 NA non-coding downstream 369 16647337 ~ 16647525 (-)
G1782685 NA non-coding downstream 15565 16631934 ~ 16632329 (-)
G1782657 NA non-coding downstream 45918 16601653 ~ 16601976 (-)
G1782605 LOC106581803 non-coding downstream 153482 16492387 ~ 16494412 (-)
G1782604 LOC106581803 non-coding downstream 157004 16488914 ~ 16490890 (-)
G1782704 NA non-coding upstream 5156 16659300 ~ 16659805 (-)
G1782708 NA non-coding upstream 7853 16661997 ~ 16662206 (-)
G1782678 NA non-coding upstream 10458 16664602 ~ 16668745 (-)
G1782716 NA non-coding upstream 17364 16671508 ~ 16671792 (-)
G1782717 NA non-coding upstream 17952 16672096 ~ 16672365 (-)
b3galt1b LOC106581793 other downstream 822680 15684423 ~ 15825221 (-)
G1781137 lrp2 other downstream 1079360 15567503 ~ 15568534 (-)
G1778224 NA other downstream 3317399 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 3474915 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 4023200 12620582 ~ 12624860 (-)
G1783895 LOC106581829 other upstream 1215385 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 2521423 19175567 ~ 19179266 (-)
G1785753 NA other upstream 2667044 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 3002138 19655763 ~ 19666201 (-)

Expression


Co-expression Network