Item | Value |
---|---|
gene id | LOC110501511 |
gene name | pkp4 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048586.1 |
NCBI id | CM023240.2 |
chromosome length | 52474311 |
location | 17064335 ~ 17178344 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
pkp4 | Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion and cell-cell junction assembly. Predicted to act upstream of or within cell adhesion; positive regulation of GTPase activity; and positive regulation of cytokinesis. Predicted to be located in cell junction. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Orthologous to human PKP4 (plakophilin 4). |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036958886.1 | False | 4838 | mRNA | 0.55 | 21 | 17064335 | 17155416 |
XM_036958885.1 | False | 4588 | mRNA | 0.55 | 22 | 17064335 | 17165291 |
XM_036958884.1 | False | 4766 | mRNA | 0.56 | 23 | 17064335 | 17178291 |
XM_021579147.2 | False | 4621 | mRNA | 0.56 | 22 | 17064335 | 17178342 |
XM_036958883.1 | False | 4620 | mRNA | 0.56 | 22 | 17064335 | 17178344 |
TU2041306 | False | 237 | lncRNA | 0.51 | 1 | 17156366 | 17156602 |
TU2041303 | True | 342 | lncRNA | 0.48 | 1 | 17161859 | 17162200 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110501514 | dapl1 | coding | downstream | 785 | 17057104 ~ 17063550 (-) |
LOC110501509 | tanc1 | coding | downstream | 15050 | 16868323 ~ 17049285 (-) |
LOC110501503 | tank | coding | downstream | 410191 | 16647894 ~ 16654144 (-) |
LOC110501502 | tbr1 | coding | downstream | 437761 | 16621825 ~ 16626574 (-) |
LOC110501500 | LOC106581805 | coding | downstream | 467661 | 16541255 ~ 16596674 (-) |
LOC110501516 | LOC106586173 | coding | upstream | 56051 | 17234395 ~ 17241046 (-) |
LOC110501517 | LOC106581816 | coding | upstream | 63364 | 17241708 ~ 17253527 (-) |
LOC110501523 | galnt5 | coding | upstream | 169868 | 17348212 ~ 17357611 (-) |
LOC110502059 | gpd2 | coding | upstream | 266140 | 17444484 ~ 17486216 (-) |
LOC110501525 | kcnj3 | coding | upstream | 500544 | 17678888 ~ 17708244 (-) |
G1782851 | NA | non-coding | downstream | 181159 | 16851497 ~ 16883176 (-) |
G1782818 | NA | non-coding | downstream | 247276 | 16816427 ~ 16817059 (-) |
G1782669 | NA | non-coding | downstream | 319003 | 16730678 ~ 16745332 (-) |
G1782671 | rbms1 | non-coding | downstream | 339854 | 16720314 ~ 16724481 (-) |
G1782722 | NA | non-coding | downstream | 385447 | 16678539 ~ 16678888 (-) |
G1783035 | NA | non-coding | upstream | 51417 | 17229761 ~ 17231359 (-) |
G1783036 | NA | non-coding | upstream | 53171 | 17231515 ~ 17232043 (-) |
G1783045 | NA | non-coding | upstream | 76519 | 17254863 ~ 17255068 (-) |
G1783081 | acvr1 | non-coding | upstream | 109593 | 17287937 ~ 17290898 (-) |
G1783086 | NA | non-coding | upstream | 116432 | 17294776 ~ 17294976 (-) |
b3galt1b | LOC106581793 | other | downstream | 1239121 | 15684423 ~ 15825221 (-) |
G1781137 | lrp2 | other | downstream | 1495801 | 15567503 ~ 15568534 (-) |
G1778224 | NA | other | downstream | 3733840 | 13279280 ~ 13330495 (-) |
G1778140 | efnb2 | other | downstream | 3891356 | 13168780 ~ 13172979 (-) |
G1783895 | LOC106581829 | other | upstream | 691185 | 17869529 ~ 17903951 (-) |
LOC110501547 | LOC106586143 | other | upstream | 1997223 | 19175567 ~ 19179266 (-) |
G1785753 | NA | other | upstream | 2142844 | 19321188 ~ 19321859 (-) |
znf142 | znf142 | other | upstream | 2477938 | 19655763 ~ 19666201 (-) |
G1786832 | LOC100136012 | other | upstream | 3167355 | 20345699 ~ 20346014 (-) |
G1783003 | NA | non-coding | upstream | 7345 | 17169545 ~ 17169748 (-) |