LOC110501516 (LOC106586173)


Basic Information

Item Value
gene id LOC110501516
gene name LOC106586173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 17234395 ~ 17241046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579153.2
GCTATATCAGCCCCAGAATCAGAGACGCCACTTTTATTTCCTTCGAGCTGAACACGTGTCAAGAGTATTTGGAAACTGCTACACAGCACAACAGCGAATACCACCTGTATTATTTTTCTGTCTAGCCTGAAAGtATATCTACAGTGTCATCTATTTTACTCAACTGTATGGGGACTGTCTCGGACCATTCTGAATATAGCGAACCGGAGGTCCTTTTCAAGAACCCACAGATCCATGTTAAAAACCCCCACTTGGATACAATGGAAGAGGACATTCTCTATCACTTCAACCTGGGGACCAAGACCCACAACCTACCTGAGATGTTTGGAGACGTCAAGTTTGTGTGCGTCGGCGGGAGTGCCAATCGGATGAAGTCCTTTGCTCAGTTCATTCACCAGGAGCTGGCCTTGCCCGGAAACATGGATAATGTCACAGATATCTGTGAAGGAACCGACCGCTACTCCATGTACAAAGTGGGACCCGTACTTTCTATCAGTCATGGTATGGGCGTCCCCTCCATCTCCATCATGCTCCATGAGCTCATCAAACTGCTGCATCATGCCCGCTGCATCGACTTCATCCTCTTCCGCATTGGCACCTCCGGTGGAGTCGGTCTGGAAGCAGGAACAGTAGTGGTCACAGACAAGGCGGTGGACTGCTTCTTCCGCGCCCAGTTTGAGCAGGTGGTTCTAGGTAAGGTGGTCACCAGGAGCACAGAGCTGGATGTGGGCGTATCCAAGGAGCTGCTGCAGTGCTCGTCCGAGTTAGACGACGTGCCAACCGTCATCGGAAACACCATGTGCACCAGTGACTTCTACGAAGGTCAGGGTCGGCTTGATGGAGCTCTCTGCTCCTTCTCCACTGAGGACAAGCGGGAGTACTTAAGGAAAGCCTATAACACAGGAGTCAGGAATATTGAGATGGAGTCCACCGTCTTCGCAGCCATGTGTCGTGCCTGTGCCATCAAAGCGGCTGTCGTCTGTGTGACTTTGTTGAACCGTTTCGATGGGGATCAGATCTCCACCCCTCATGATGTGCTAGTGGAGTACCAACAGAGACCTCAGGTTCTGGTGGCCCACTTCATCAAGAAACGCCTGGGCCTCGTCGTCTAAAGCTCCCTCCGATCACATCTGCTGCCCATGAACTGCACATAGCTACAGCCTCGACTGTTACGTGGACATACAcggagtgtagaaaacattaggaactcctTCCTATTGAGTTTCACCCCTTTTGCccctgactgaagtggatttaacaggtgacatcaataagggatcatagctttcacctgatcagactgtcatggaaagagcaggtgttcttaatgttttgtacactcagtgtatgtatacAGTCATGTTGATATGTTAAGATATTATTTAAAGTGTTCTAAAAGTACATGAAGATTTGACAGATGTGTTGTATCGTGTATGATTTGTTAAATGAAGCTCAAAGAGTGGGCTCATACGCAATTGTGTGGTATATTTGTAATGGtattgcagttgaagtcggaagtttacatacaccgattttggagcagtggcttcttccttgtttcttccttgctgagtttatacttgtgtactattgtttgttcagatgaacatagtaccttcaggcatttggaaattgctcccaaggatgaaccagacttgtggaggtctacaatttattttctgaggtcttggctgattttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaaggatgtcattagcctatcagaagcttctaaagccatgacataattttctggagttttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataaattaaataatctgtatgtaaacaattgttgaaaaaattacctgtgtcatgcacaaagtagatgtcttaaccgacttgccaaagctatagtttgttaacaagaaatgtgtggagtggttgaaaaacgagttttaataactccaacctaagtgtatgtaaacttccgacttcaactgtatatattgtgtTGCTTTTGACTACCTTGACTGTGTAGATGAAATTGTTGGTTTCTCTGTAACTACACGGAACAGAAAGATAAACGCAACCtgtaaa
>XM_021579154.2
GCTATATCAGCCCCAGAATCAGAGACGCCACTTTTATTTCCTTCGAGCTGAACACGTGTCAAGAGTATTTGGAAACTGCTACACAGCACAACAGCGAATACCACCTGTATTATTTTTCTGTCTAGCCTGAAAGTGTCATCTATTTTACTCAACTGTATGGGGACTGTCTCGGACCATTCTGAATATAGCGAACCGGAGGTCCTTTTCAAGAACCCACAGATCCATGTTAAAAACCCCCACTTGGATACAATGGAAGAGGACATTCTCTATCACTTCAACCTGGGGACCAAGACCCACAACCTACCTGAGATGTTTGGAGACGTCAAGTTTGTGTGCGTCGGCGGGAGTGCCAATCGGATGAAGTCCTTTGCTCAGTTCATTCACCAGGAGCTGGCCTTGCCCGGAAACATGGATAATGTCACAGATATCTGTGAAGGAACCGACCGCTACTCCATGTACAAAGTGGGACCCGTACTTTCTATCAGTCATGGTATGGGCGTCCCCTCCATCTCCATCATGCTCCATGAGCTCATCAAACTGCTGCATCATGCCCGCTGCATCGACTTCATCCTCTTCCGCATTGGCACCTCCGGTGGAGTCGGTCTGGAAGCAGGAACAGTAGTGGTCACAGACAAGGCGGTGGACTGCTTCTTCCGCGCCCAGTTTGAGCAGGTGGTTCTAGGTAAGGTGGTCACCAGGAGCACAGAGCTGGATGTGGGCGTATCCAAGGAGCTGCTGCAGTGCTCGTCCGAGTTAGACGACGTGCCAACCGTCATCGGAAACACCATGTGCACCAGTGACTTCTACGAAGGTCAGGGTCGGCTTGATGGAGCTCTCTGCTCCTTCTCCACTGAGGACAAGCGGGAGTACTTAAGGAAAGCCTATAACACAGGAGTCAGGAATATTGAGATGGAGTCCACCGTCTTCGCAGCCATGTGTCGTGCCTGTGCCATCAAAGCGGCTGTCGTCTGTGTGACTTTGTTGAACCGTTTCGATGGGGATCAGATCTCCACCCCTCATGATGTGCTAGTGGAGTACCAACAGAGACCTCAGGTTCTGGTGGCCCACTTCATCAAGAAACGCCTGGGCCTCGTCGTCTAAAGCTCCCTCCGATCACATCTGCTGCCCATGAACTGCACATAGCTACAGCCTCGACTGTTACGTGGACATACAcggagtgtagaaaacattaggaactcctTCCTATTGAGTTTCACCCCTTTTGCccctgactgaagtggatttaacaggtgacatcaataagggatcatagctttcacctgatcagactgtcatggaaagagcaggtgttcttaatgttttgtacactcagtgtatgtatacAGTCATGTTGATATGTTAAGATATTATTTAAAGTGTTCTAAAAGTACATGAAGATTTGACAGATGTGTTGTATCGTGTATGATTTGTTAAATGAAGCTCAAAGAGTGGGCTCATACGCAATTGTGTGGTATATTTGTAATGGtattgcagttgaagtcggaagtttacatacaccgattttggagcagtggcttcttccttgtttcttccttgctgagtttatacttgtgtactattgtttgttcagatgaacatagtaccttcaggcatttggaaattgctcccaaggatgaaccagacttgtggaggtctacaatttattttctgaggtcttggctgattttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaaggatgtcattagcctatcagaagcttctaaagccatgacataattttctggagttttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataaattaaataatctgtatgtaaacaattgttgaaaaaattacctgtgtcatgcacaaagtagatgtcttaaccgacttgccaaagctatagtttgttaacaagaaatgtgtggagtggttgaaaaacgagttttaataactccaacctaagtgtatgtaaacttccgacttcaactgtatatattgtgtTGCTTTTGACTACCTTGACTGTGTAGATGAAATTGTTGGTTTCTCTGTAACTACACGGAACAGAAAGATAAACGCAACCtgtaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K00757 udp, UPP; uridine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579153.2 False 2199 mRNA 0.45 8 17234395 17241046
XM_021579154.2 True 2188 mRNA 0.45 8 17234395 17241046
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Neighbor

gene id symbol gene type direction distance location
LOC110501511 pkp4 coding downstream 56051 17064335 ~ 17178344 (-)
LOC110501514 dapl1 coding downstream 170845 17057104 ~ 17063550 (-)
LOC110501509 tanc1 coding downstream 185110 16868323 ~ 17049285 (-)
LOC110501503 tank coding downstream 580251 16647894 ~ 16654144 (-)
LOC110501502 tbr1 coding downstream 607821 16621825 ~ 16626574 (-)
LOC110501517 LOC106581816 coding upstream 662 17241708 ~ 17253527 (-)
LOC110501523 galnt5 coding upstream 107166 17348212 ~ 17357611 (-)
LOC110502059 gpd2 coding upstream 203438 17444484 ~ 17486216 (-)
LOC110501525 kcnj3 coding upstream 437842 17678888 ~ 17708244 (-)
LOC110501526 LOC106581824 coding upstream 507471 17748517 ~ 17815344 (-)
G1783036 NA non-coding downstream 2352 17231515 ~ 17232043 (-)
G1783035 NA non-coding downstream 3036 17229761 ~ 17231359 (-)
G1783003 NA non-coding downstream 64647 17169545 ~ 17169748 (-)
G1782851 NA non-coding downstream 351219 16851497 ~ 16883176 (-)
G1783045 NA non-coding upstream 13817 17254863 ~ 17255068 (-)
G1783081 acvr1 non-coding upstream 46891 17287937 ~ 17290898 (-)
G1783086 NA non-coding upstream 53730 17294776 ~ 17294976 (-)
G1783139 NA non-coding upstream 57629 17298675 ~ 17298957 (-)
G1783140 NA non-coding upstream 58702 17299748 ~ 17300179 (-)
b3galt1b LOC106581793 other downstream 1409181 15684423 ~ 15825221 (-)
G1781137 lrp2 other downstream 1665861 15567503 ~ 15568534 (-)
G1778224 NA other downstream 3903900 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 4061416 13168780 ~ 13172979 (-)
G1783895 LOC106581829 other upstream 628483 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 1934521 19175567 ~ 19179266 (-)
G1785753 NA other upstream 2080142 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 2415236 19655763 ~ 19666201 (-)
G1786832 LOC100136012 other upstream 3104653 20345699 ~ 20346014 (-)

Expression

LOC110501516(LOC106586173) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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LOC110501516(LOC106586173) Expression in each Bioproject

Bar chart with 21 bars.
LOC110501516(LOC106586173) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network