LOC110501517 (LOC106581816)


Basic Information

Item Value
gene id LOC110501517
gene name LOC106581816
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 17241708 ~ 17253527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579156.2
GCCCTGTTTCCATGGTAACAAAACTTTGGGCACAGTCTGTTGGGCACAGTCGGACGTTTGTCTTGTCACTCGTTGCAAGCTAGCTCTAAACCTATACTCGGTTTTCTCCGCGCTCTTTGCCAGTGTCCAGATTTGCAACCGCTGTATAGCTGGAGATAAAGACAACATTAGACATGGACACTGACACAGATCACCAACAAAACAACGATGACGTTAACAATGGTGATGATTGTTCAACAAAAGCTGCCCCGACCTCCCAGATTCCTGGGCTGTCTGAAGATGCTAACaatggtcctgaggagaggagtaaaggGCGCCGTACGGGAGTTAATGAGTCCGATTCTGCTTATACTAAACTGGCTAAACAAGGAGGACAGAGGGGTTTATTGTGGCATGAGGAGACCAACTTGGACACCAAACCTAACTCTGCATCATCTTACAAGCCTCCTAACTGGTTCTCTGGTTCTCCAAAAGCTAAAGAGCAAGCAAGCCCAACTGAGAGTTTCCAAAACTACATGTCAACTAATGCTCCTTTTGGGAGTGATAATAAGTCAACTTGGGAAAGGGACTTTGATGACAAAGAGAAGATATCTCCCAACAGCCAAATGGAGAAGTTGTCCTTAGCATCAGGAAAGAACGAAGAGGCAGCAGGCAATTTCAAGAAAACATCTCAGAATTCGAACCCTGTCAACATGGGTACGCTCTTGAGCTTCGGCTATTTAGAGGACAAGAAAGGGGCACCCAATATGCATTCATCAAATTCCAAGGAGTAGAAAGGAGCAAAGGCAGTTGAGGACGACTGACTCCTCAATGTTCACCTCCACAACGTTCCTTCACCGGGGTTTGCCTGTTCAAAACCGCATATACTATAGGTCAATTAAAGCAGTTAATTTTGGTTAGAGTTTTAGCACTCTTGTTATTCCACCTCTGTGTGTGCTCGTTCCAAGAAGTATACACAATTGCAAAACTAGATTCTACGTTAGTTTGCGCTCACAGACCCGTTCTGTGCCTGAAGTTGTTGCTAATGAACTGCATTTGCACTGTAACACTAACTTAATGTACTAGCCCGAGCTATGCTCTTGTTTGTCTGTTgtagtagtttttttttttgaatgATGGTTTGCTTTTTAAAAGGTGTCTGTGGCTTAGAGGGGCTCCTCTAAAAATGCCTGCTGTTTTGAAGTGTCTTTGTTTTGTGCCTCTGTGGTTGCTATAAAGAtttctgttgaaaaataaatgtgttgTGCATAGGAA
>XM_036958888.1
GCCCTGTTTCCATGGTAACAAAACTTTGGGCACAGTCTGTTGGGCACAGTCGGACGTTTGTCTTGTCACTCGTTGCAAGCTAGCTCTAAACCTATACTCGGTTTTCTCCGCGCTCTTTGCCAGTGTCCAGATTTGCAACCGCTGTATAGCTGGAGATAAAGACAACATTAGACATGGACACTGACACAGATCACCAACAAAACAACGATGCTGCCCCGACCTCCCAGATTCCTGGGCTGTCTGAAGATGCTAACaatggtcctgaggagaggagtaaaggGCGCCGTACGGGAGTTAATGAGTCCGATTCTGCTTATACTAAACTGGCTAAACAAGGAGGACAGAGGGGTTTATTGTGGCATGAGGAGACCAACTTGGACACCAAACCTAACTCTGCATCATCTTACAAGCCTCCTAACTGGTTCTCTGGTTCTCCAAAAGCTAAAGAGCAAGCAAGCCCAACTGAGAGTTTCCAAAACTACATGTCAACTAATGCTCCTTTTGGGAGTGATAATAAGTCAACTTGGGAAAGGGACTTTGATGACAAAGAGAAGATATCTCCCAACAGCCAAATGGAGAAGTTGTCCTTAGCATCAGGAAAGAACGAAGAGGCAGCAGGCAATTTCAAGAAAACCCCAGCAGCCCAACTACCAATTGATGGGGCTGAAGAAAAATCTCAGAATTCGAACCCTGTCAACATGGGTACGCTCTTGAGCTTCGGCTATTTAGAGGACAAGAAAGGGGCACCCAATATGCATTCATCAAATTCCAAGGAGTAGAAAGGAGCAAAGGCAGTTGAGGACGACTGACTCCTCAATGTTCACCTCCACAACGTTCCTTCACCGGGGTTTGCCTGTTCAAAACCGCATATACTATAGGTCAATTAAAGCAGTTAATTTTGGTTAGAGTTTTAGCACTCTTGTTATTCCACCTCTGTGTGTGCTCGTTCCAAGAAGTATACACAATTGCAAAACTAGATTCTACGTTAGTTTGCGCTCACAGACCCGTTCTGTGCCTGAAGTTGTTGCTAATGAACTGCATTTGCACTGTAACACTAACTTAATGTACTAGCCCGAGCTATGCTCTTGTTTGTCTGTTgtagtagtttttttttttgaatgATGGTTTGCTTTTTAAAAGGTGTCTGTGGCTTAGAGGGGCTCCTCTAAAAATGCCTGCTGTTTTGAAGTGTCTTTGTTTTGTGCCTCTGTGGTTGCTATAAAGAtttctgttgaaaaataaatgtgttgTGCATAGGAA
>XM_021579155.2
GTCAACGTCCCAGCCCTGTTTCCATGGTAACAAAACTTTGGGCACAGTCTGTTGGGCACAGTCGGACGTTTGTCTTGTCACTCGTTGCAAGCTAGCTCTAAACCTATACTCGGTTTTCTCCGCGCTCTTTGCCAGTGTCCAGATTTGCAACCGCTGTATAGCTGGAGATAAAGACAACATTAGACATGGACACTGACACAGATCACCAACAAAACAACGATGACGTTAACAATGGTGATGATTGTTCAACAAAAGCTGCCCCGACCTCCCAGATTCCTGGGCTGTCTGAAGATGCTAACaatggtcctgaggagaggagtaaaggGCGCCGTACGGGAGTTAATGAGTCCGATTCTGCTTATACTAAACTGGCTAAACAAGGAGGACAGAGGGGTTTATTGTGGCATGAGGAGACCAACTTGGACACCAAACCTAACTCTGCATCATCTTACAAGCCTCCTAACTGGTTCTCTGGTTCTCCAAAAGCTAAAGAGCAAGCAAGCCCAACTGAGAGTTTCCAAAACTACATGTCAACTAATGCTCCTTTTGGGAGTGATAATAAGTCAACTTGGGAAAGGGACTTTGATGACAAAGAGAAGATATCTCCCAACAGCCAAATGGAGAAGTTGTCCTTAGCATCAGGAAAGAACGAAGAGGCAGCAGGCAATTTCAAGAAAACCCCAGCAGCCCAACTACCAATTGATGGGGCTGAAGAAAAATCTCAGAATTCGAACCCTGTCAACATGGGTACGCTCTTGAGCTTCGGCTATTTAGAGGACAAGAAAGGGGCACCCAATATGCATTCATCAAATTCCAAGGAGTAGAAAGGAGCAAAGGCAGTTGAGGACGACTGACTCCTCAATGTTCACCTCCACAACGTTCCTTCACCGGGGTTTGCCTGTTCAAAACCGCATATACTATAGGTCAATTAAAGCAGTTAATTTTGGTTAGAGTTTTAGCACTCTTGTTATTCCACCTCTGTGTGTGCTCGTTCCAAGAAGTATACACAATTGCAAAACTAGATTCTACGTTAGTTTGCGCTCACAGACCCGTTCTGTGCCTGAAGTTGTTGCTAATGAACTGCATTTGCACTGTAACACTAACTTAATGTACTAGCCCGAGCTATGCTCTTGTTTGTCTGTTgtagtagtttttttttttgaatgATGGTTTGCTTTTTAAAAGGTGTCTGTGGCTTAGAGGGGCTCCTCTAAAAATGCCTGCTGTTTTGAAGTGTCTTTGTTTTGTGCCTCTGTGGTTGCTATAAAGAtttctgttgaaaaataaatgtgttgTGCATAGGAA

Function

NR:

description
uncharacterized protein C7orf57 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579156.2 False 1254 mRNA 0.44 8 17241708 17253515
XM_036958888.1 False 1260 mRNA 0.44 9 17241708 17253515
XM_021579155.2 True 1305 mRNA 0.44 9 17241708 17253527
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110501516 LOC106586173 coding downstream 662 17234395 ~ 17241046 (-)
LOC110501511 pkp4 coding downstream 63364 17064335 ~ 17178344 (-)
LOC110501514 dapl1 coding downstream 178158 17057104 ~ 17063550 (-)
LOC110501509 tanc1 coding downstream 192423 16868323 ~ 17049285 (-)
LOC110501503 tank coding downstream 587564 16647894 ~ 16654144 (-)
LOC110501523 galnt5 coding upstream 94685 17348212 ~ 17357611 (-)
LOC110502059 gpd2 coding upstream 190957 17444484 ~ 17486216 (-)
LOC110501525 kcnj3 coding upstream 425361 17678888 ~ 17708244 (-)
LOC110501526 LOC106581824 coding upstream 494990 17748517 ~ 17815344 (-)
fmnl2a LOC106581828 coding upstream 652531 17906058 ~ 17995814 (-)
G1783036 NA non-coding downstream 9665 17231515 ~ 17232043 (-)
G1783035 NA non-coding downstream 10349 17229761 ~ 17231359 (-)
G1783003 NA non-coding downstream 71960 17169545 ~ 17169748 (-)
G1782851 NA non-coding downstream 358532 16851497 ~ 16883176 (-)
G1783045 NA non-coding upstream 1336 17254863 ~ 17255068 (-)
G1783081 acvr1 non-coding upstream 34410 17287937 ~ 17290898 (-)
G1783086 NA non-coding upstream 41249 17294776 ~ 17294976 (-)
G1783139 NA non-coding upstream 45148 17298675 ~ 17298957 (-)
G1783140 NA non-coding upstream 46221 17299748 ~ 17300179 (-)
b3galt1b LOC106581793 other downstream 1416494 15684423 ~ 15825221 (-)
G1781137 lrp2 other downstream 1673174 15567503 ~ 15568534 (-)
G1778224 NA other downstream 3911213 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 4068729 13168780 ~ 13172979 (-)
G1783895 LOC106581829 other upstream 616002 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 1922040 19175567 ~ 19179266 (-)
G1785753 NA other upstream 2067661 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 2402755 19655763 ~ 19666201 (-)
G1786832 LOC100136012 other upstream 3092172 20345699 ~ 20346014 (-)

Expression

LOC110501517(LOC106581816) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
End of interactive chart.

LOC110501517(LOC106581816) Expression in each Bioproject

Bar chart with 21 bars.
LOC110501517(LOC106581816) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7500.
End of interactive chart.

Co-expression Network