LOC110501524 (LOC106586168)


Basic Information

Item Value
gene id LOC110501524
gene name LOC106586168
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 17489320 ~ 17495933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579167.2
CAGACCCGGTAGTCGAAGGTTGTATCGCGCGCAGTGCTCTGAGGAAGTCATACAGATTGCTTGGTTGGTATTGTAGGCTGTACTGTCGCTCACGCTTTGGAGCTTTTTTCAGAATTGAAAAGCACTATCTACATGCTTTATGCATGGATTGACAACCACGATTCTGACGTGAAAGAAGGGGACGATTCCAGAAAAGAGACACTTTCTTGAATCCTGACCCCATACTCCTCCAGACAACATTATCAATTTCAAGTGTCACCGAAAAACAGTCTCAAGACTAAAGCCATGCCCTGCGTTCAAGCTCAGTATGGGTCATCACCGCAAGGAGCCAGTCCCGCTTCTCAGAGCTACAGCTACCACACCGCTGGAGAATACAGCTGCGACTTCTTAACACCTGAGTTTGTTAAGTTTAGTATGGACCTGACCAACACTGAGATCACAGCTACTACTTCTCTCCCTAGTTTCAGCACGTTCATGGACAACTATAGCACCAGTTACGACGTTAAACCGCCCTGTCTATATCAAATGCCGCATTCTGGAGAGCAGTCCTCCATCAAAGTCGAGGACGTCCAGATGCACAGCTATCATCAGCAGAGCCATTTGCCAGCTCAGTCGGAAGAGATGATGGCCCACTCCGGCTCTATGTACTTCAAACCCTCCTCGCCTCATGCCCCAACCACACCAAACTTCCAGGTTCAGCCCAATCACATGTGGGAGGACCCTGGGTCCCTCCACAGTTTCCACCAGAACTATGTGGCAGCGACCTCTCATATGATAGAGCAGCGCAAAAACCCGGTGTCAAGGCTGTCACTATTCTCCTTCAAACAGTCCCCTCCTGGTACCCCTGTGTCGAGTTGCCAGATGCGATTCGATGGCCCACTGCATGTATCCATGAACCACGACAACCCAGGAGCACATCGAGGCTTAGACAGCCAGAGCTTCGCGGTACCCAGTGCTCTAAGGAAACAGGCCGGGTTAGCCTTTCCTCACTCCCTTCAGCTCGGCCATGGACACCAGTTGATGGACAGCCAAGTTCATTCGCCCCCGTCCCGAGGGTCACCATCAAACGAGGGTCTGTGCGCAGTGTGTGGGGACAACGCCGCTTGCCAGCATTATGGAGTGAGAACCTGCGAGGGTTGCAAAGGATTTTTTAAGCGCACTGTTCAGAAAAATGCTAAATATGTGTGTTTAGCGAACAAAAATTGTCCTGTCGATAAACGCCGAAGAAACCGTTGCCAGTACTGCCGTTTCCAGAAGTGCATGGTTGTCGGAATGGTCAAAGAGGTTGTCCGGACTGCTAATCTAAAAGGTCGAAGAGGCCGTCTTCCCTCCAAACCTAAAAGTCCCCAAGACCCCTCACCACCCTCGCCACCTGTCAGTCTCATAAGTGCCCTTGTTAGGGCTCATGTCGATTCCAACCCGTCCATGTCTGGCTTGGACTACTCAAGATTTCAGGCTAACCCTGACTACCAAATGAGTGGAGACGACACCCAGCACATCCAGCAGTTCTATGATCTCCTGACGGGTTCCATGGAGATTATCCGAGGTTGGGCGGAGAAGATCCCTGGGTTTTCTGATCTTCCGAAGCAGGATCAAGATCTCCTTTTCGAATCAGCCTTCCTGGAACTTTTTGTTCTGCGGCTGGCATACAGGTCCAACCCAGTGGAAGGCAAACTCATTTTTTGCAACGGGGTGGTCTTACACAGGCTGCAGTGTGTCCGAGGATTTGGGGAATGGATAGACTCGATTGTGGAGTTTTCCTCTAACCTGCAGAGCATGAACATCGACATATCAGCATTCTCCTGCATCGCCGCTCTTGCCATGGTAACAGAGAGGCATGGGCTTaaggaacccaaaagggttgAAGAACTTCAAAACAAGATAGTGAACTGCCTTAAAGACCAAGTGACATTCAATGGCGGAGGTTTGAATCGTCCGAACTACTTGTCAAAACTTTTGGGAAAGCTCCCTGAACTTCGCACCCTATGTACACAAGGTCTGCAACGTATCTTCTACTTAAAACTCGAAGACTTGGTTCCTCCGCCAGCAATAATTGACAAACTTTTCCTCGACACTCTACCTTTTTAAATAGACTTTAAAACGGACTTTTGACGAGACCTCAAAGAACTTCCACAGACTCTGTTTGAGTCAGCCTAACAGATTTGAAAGATTTTATCTCTGAATATTTGCAAGCTCCATAGTACAATCAAGGATCCACGAAATTGATATAAAGAAGAGTGAGAAAATTGGGTTCAGAAAACCAACCGATCTtcgatttttttaaatgtaattgccAGAAATGTTGTGAGTAGCCCATGATCGACCCCACACCGGGGAAAGTCTCCAAGGCTTCTCTTGACATAATGTGGATAATTCTCGACCAAGTGAAACACTTTCTTGCAATTCTTATTCCTTATTGTTGACTAACCATCTGCCCCATTGATAACGCATACTGATATGTAATATATTCcatttatatatacacatatatgatAGATTATGTGATGCGTCCAAAGCGTCAATTTATAACACTTGTAAAAAGTTTGTTAATGACAAAATTTCATTTGACTTTTATGACTTGTGCCTATATGTGTTTCTGTCAGGATCCCAGAGGTGCGAAAGTATTTCGAAAAGACAACGCATGTTGTAGGTTTTTATAGGCACTGGCTGTCGAGGAGACATGTctatattatacattatatacTGGACACTATGTAGTCTGCTAGATTTTATAAAGATTCGTAGTACTGGCACACCTTTTATGTATGACGCATATGTGAAAAGTATCTCCATCTGTATAGATAAAGAGGGATCCATGGTGTTTGTAAAACTGTCAGACATTCCTTGTTTGTATGTGTTGTAAGTATTGTTGCTGTTGAATATAAacgtttatatatttattattttattgccAAAAGCGACGTTAAGCATGGAACATTTTTAAATGATTTCAAACCTTCATAATTCATGCTGAGCACGTTGTCTATGTTTTATGTCTTATAGACGTTTAGATTGTTATAATTTTACACATTTGAAAATGAAAAATTCGTCctatataaaatataattaagTGTGCGGTACATCCTTTGCCTTTCATGGTGTATTTGAGTAGGCTATTGCAATGCATTCGGTGCCGAATTCCAAAcctttagagagaaagagatatttAATGTTTACAAATAAAACTTTTAAATCATTTTTCTTCCGAAACAATTTCTCTTAACTGATTTTTCTTTACAAATACAGGTGCGTCTAAATGAAATGATTTAATTCAAAATTAATTGAGTGAAATATTGCTTGCTTTCCTGTAGGCATAAATATAGATTTTACGTCTTGATTAAATTCTTTCTCGGTAGCTCTATGCTGTATGGAATATTTTCCTTTTGTTCAAGCTCAGTAGAAATGAGGTGTTAGTAATTAGGCTGTGATTACAGTGAATGTTTGATTACAGTGAAATAACTTACAATTTACATGaatgcaaaaacaaaaaatgTTGATTAAAAATAGATAACCCTCAGAAATGGGCATGCTTGCTTGAAAGGTAGGCTATATGGTTTACACTCTAAGAAAAAAAGGTTCTGGATAGAACCAAAAATGTTTATATGCTTGCTTCATATATGACACCCGTTAATGTTATATAAATAACCGAATTGGTTTCCTAAAGAACCCAATATGGAACCCAAGGAGTATTTTTGGTTCCGATTTTGGTTCAGTGTAGAATAACCAAATAACCCTACATAAGGGTTTATATAGAACCTTTAGGTGTGCCATATATGAAGCAAGCAATATAACCCCTTTTGGTTCTATActgaacctttttttctaagagcgtaGGCTAGTGTTTAATTGAGGTCGGAGActttatttggatttgttttgcAAGAAAATTGGGAACTCACACTAGCAGTTTCCTAAAAGAAGGCTGAACAGTCTTGGACTCAAAATAATTGGTCAAAACGTTTACATTGTTTACTAATTTCTCATATGGCGACTGGCCTGCTATTCCAAAAGACCAACAAGTGGGGACATTGAAATATCAAGAGAAGTTCAAGTGGCATGCTGATATAGCGTCAATGCAGGGTCATCATACTTTCAAATATGAAATGAATAGAATAAGTGACAGCCGAGAACATAATACGAGATTTCCCAGTCTTTATTAATTCAACCACTTCTCACAATTTGGAACTCGGAAAAGATTATCCAGAAAGACGGGTAGACTAGGCTGCTATAAAGTAAAACAGTTCTAAAACAGTTGGatggacataaaaaaaaaa
>TU2041738
GCTTTCCTGTAGGCATAAATATAGATTTTACGTCTTGATTAAATTCTTTCTCGGTAGCTCTATGCTGTATGGAATATTTTCCTTTTGTTCAAGCTCAGTAGAAATGAGGTGTTAGTAATTAGGCTGTGATTACAGTGAATGTTTGATTACAGTGAAATAACTTACAATTTACATGaatgcaaaaacaaaaaatgTTGATTAAAAATAGATAACCCTCAGAAATGGGCATGCTTGCTTGAAAGGTAGGCTATATGGTTTACACTCTAAGAAAAAAAGGTTCTGGATAGAACCAAAAATGTTTATATGCTTGCTTCATATATGACACCCGTTAATGTTATATAAATAACCGAATTGGTTTCCTAAAGAACCCAATATGGAACCCAAGGAGTATTTTTGGTTCCGATTTTGGTTCAGTGTAGAATAACCAAATAACCCTACATAAGGGTTTATATAGAACCTTTAGGTGTGCCATATATGAAGCAAGCAATATAACCCCTTTTGGTTCTATActgaacctttttttctaagagcgtaGGCTAGTGTTTAATTGAGGTCGGAGActttatttggatttgttttgcAAGAAAATTGGGAACTCACACTAGCAGTTTCCTAAAAGAAGGCTGAACAGTCTTGGACTCAAAATAATTGGTCAAAACGTTTACATTGTTTACTAATTTCTCATATGGCGACTGGCCTGCTATTCCAAAAGACCAACAAGTGGGGACATTGAAATATCAAGAGAAGTTCAAGTGGCATGCTGATATAGCGTCAATGCAGGGTCATCATACTTTCAAATATGAAATGAATAGAATAAGTGACAGCCGAGAACATAATACGAGATTTCCCAGTCTTTATTAATTCAACCACTTCTCACAATTTGGAACTCGGAAAAGATTATCCAGAAAGACGGGTAGACTAGGCTGCTATAAAGTAAAACAGTTCTAAAACAGTTGGatggacataaaaaaaaaacaactacaaAACAGTAGTcctaaatggatttattgtgtaCAAAATAATGGacaatgtaatttaaaaaataagcGCTATTTTGGAACGAAGTTAACAGACAAGCAGGGTCAATACTTTGGATTTAT

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0021884 forebrain neuron development biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579167.2 False 4274 mRNA 0.42 8 17489320 17495808
TU2041738 True 1100 lncRNA 0.34 1 17494834 17495933

Neighbor

gene id symbol gene type direction distance location
LOC110501522 ermn coding upstream 144946 17342386 ~ 17344374 (+)
LOC110501521 cytip coding upstream 148395 17336457 ~ 17340925 (+)
LOC110501520 acvr1c coding upstream 158036 17302600 ~ 17331284 (+)
LOC110501518 acvr1 coding upstream 198388 17255880 ~ 17290932 (+)
LOC110501515 ccdc148 coding upstream 263264 17178459 ~ 17226056 (+)
LOC110501527 LOC106581827 coding downstream 322838 17818646 ~ 17821630 (+)
LOC110501528 LOC106581829 coding downstream 373650 17869458 ~ 17904003 (+)
kalrna LOC106581831 coding downstream 605711 18101519 ~ 18386130 (+)
LOC110501533 LOC106581832 coding downstream 896029 18391837 ~ 18395440 (+)
LOC110501534 cryba2 coding downstream 906073 18401881 ~ 18404554 (+)
G1783230 NA non-coding upstream 77061 17412018 ~ 17412259 (+)
G1783222 NA non-coding upstream 82645 17406449 ~ 17406675 (+)
G1783220 NA non-coding upstream 85561 17403455 ~ 17403759 (+)
G1783206 NA non-coding upstream 97905 17391187 ~ 17391415 (+)
G1783200 NA non-coding upstream 101600 17387471 ~ 17387720 (+)
G1783336 NA non-coding downstream 4629 17500437 ~ 17500675 (+)
G1783386 NA non-coding downstream 40827 17536635 ~ 17536842 (+)
G1783439 NA non-coding downstream 72678 17568486 ~ 17568716 (+)
G1783479 NA non-coding downstream 115517 17611325 ~ 17612165 (+)
G1783548 NA non-coding downstream 150808 17646616 ~ 17646845 (+)
G1783087 NA other upstream 192961 17295953 ~ 17296359 (+)
G1782390 NA other upstream 447647 17006034 ~ 17041673 (+)
G1781813 NA other upstream 1216210 16272389 ~ 16273110 (+)
G1781423 LOC106581799 other upstream 1425919 16062757 ~ 16063401 (+)
G1781293 LOC106586198 other upstream 1640725 15839604 ~ 15848595 (+)
G1783622 NA other downstream 245949 17741757 ~ 17742435 (+)
G1783691 LOC106586162 other downstream 414092 17909900 ~ 17911226 (+)
G1784476 asic4 other downstream 1270511 18766319 ~ 18767140 (+)
LOC110501548 LOC106586143 other downstream 1690680 19186076 ~ 19197714 (+)

Expression


Co-expression Network