LOC110501527 (LOC106581827)


Basic Information

Item Value
gene id LOC110501527
gene name LOC106581827
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 17818646 ~ 17821630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470220.2
GCTGTGAAGAGGGAACTTGGAAACGTCTAGTAATGCGACGCCAAAGCAGACTGATAGACACCAGAACAAATATAGTCCTACCTGATTTAAAGGTGTTTACTCACTAACCatctttttctgcagttgtgggGAATTTCTCtggattttttttaatcaattgcTCTTTTGGCTCTTTTTGGTTGTGCCAACTGAAAATTGAAAAGTGGAGATGAATTCTACCGCTTTCAATCAAACGGACAGTGCAGGACTTTTCAATAAGACTGAAGATATATTTTGCTGTAACTTTTCATCAGTGGTGACTGATAATGGCTTCGTGGCGGCGACTCCGGATGAGAGAAGTCTCTTTCTCATGAGAGTTGTCCAGATAGCAGTTATGTGCGTGTTATCGCTCACGGTGGTTTTCGGTATATTCTTTTTGGGCTGCAATCTTCTCATCAAGTCGGAGGGAATGATCAACTTTTTGGTGACGGACAGAAGACCATCCAAAGAGTGAAagcatctgttgttctgctcctggcTCACCTCATCTGGGCATCAGCACCACCCCCAGCTCCCCAGGGGGAACCAAACAGCACCTCCACAAAATGATTTGTCTTGTCAACCCAGACCAAGGAGGACGAAGCCACAGCACAATCTGCTGCATTCTGATAGGCCACCTGTGTCCCTGTGCTCTATGGACAGAGTTAAAACTAAAAAGCGACTACAGTCGTTTTACTTCCTCCAAAATCATGCTTCCTGCCTGCCTGGTGGTTGAGGACAAATCAATCTGGCGACCCATCAGAGTTAACTGAATTGCATTTGACATGGCccattatgatgtgttatgattgATGGACGGCAGCATAGCCTACGGGATGCGTCTCCGGccaaagtccccagccactaacTCACATATTAATTACAAATAGGACATTTTGTTTGTTAAATGGTCTTTAAAACTAATAATATGTCATTAGGCATTTTATGGACAGCCATTACAGAGAAATTCATGATATTGCCATTTTCCCTAGATAAAATCCTCTAAGCACAAAAATGTTAACAGTATCTCATACATAAGTGTCAATTTGGTTGAACGTGAGTATACATTCAACACTATACTCTGAGTAACTCAATGAAGTTGAGTTAACCCAATGAAGTGTTACCCATTAGTTGAAATGGTCAGCCAGTAGTCATATAGAGATGGATGATTAGATTACCCTGAATACATTTGTGGTAGACTACGAGTTGTGAAAACTGACCTAACCTAAACAATGTTTAGCATCATCCAGTTATTAAAGCGGATTTAAGATTGTATCATTTTTGTTACTTTCATCAAAGCATCTTCTCTCTTCCTGTATTTAATTGTATTGTATTCTAAACATTTATTGCATTATTAAacatttatttcatttatttgaaTGATTGCAA
>TU2042095
TGAAGAGGGAACTTGGAAACGTCTAGTAATGCGACGCCAAAGCAGACTGATAGACACCAGAACAAATATAGTCCTACCTGATTTAAAGGTGTTTACTCACTAACCatctttttctgcagttgtgggGAATTTCTCtggattttttttaatcaattgcTCTTTTGGCTCTTTTTGGTTGTGCCAACTGAAAATTGAAAAGTGGAGATGAATTCTACCGCTTTCAATCAAACGGACAGTGCAGGACTTTTCAATAAGACTGAAGATATATTTTGCTGTAACTTTTCATCAGTGGTGACTGATAATGGCTTCGTGGCGGCGACTCCGGATGAGAGAAGTCTCTTTCTCATGAGAGTTGTCCAGATAGCAGTTATGTGCGTGTTATCGCTCACGGTGGTTTTCGGTATATTCTTTTTGGGCTGCAATCTTCTCATCAAGTCGGAGGGAATGATCAACTTTTTGGTGACGGACAGAAGACCATCCAAAGAGTGAAagcatctgttgttctgctcctggcTCACCTCATCTGGGCATCAGCACCACCCCCAGCTCCCCAGGGGGAACCAAACAGCACCTCCACAAAATGATTTGTCTTGTCAACCCAGACCAAGGAGGACGAAGCCACAGCACAATCTGCTGCATTCTGATAGGCCACCTGTGTCCCTGTGCTCTATGGACAGAGTTAAAACTAAAAAGCGACTACAGTCGTTTTACTTCCTCCAAAATCATGCTTCCTGCCTGCCTGGTGGTTGAGGACAAATCAATCTGGCGACCCATCAGAGTTAACTGAATTGCATTTGACATGGCccattatgatgtgttatgattgATGGACGGCAGCATAGCCTACGGGATGCGTCTCCGGccaaagtccccagccactaacTCACATATTAATTACAAATAGGACATTTTGTTTGTTAAATGGTCTTTAAAACTAATAATATGTCATTAGGCATTTTATGGACAGCCATTACAGAGAAATTCATGATATTGCCATTTTCCCTAGATAAAATCCTCTAAGCACAAAAATGTTAACAGTATCTCATACATAAGTGTCAATTTGGTTGAACGTGAGTATACATTCAACACTATACTCTGAGTAACTCAATGAAGTTGAGTTAACCCAATGAAGTGTTACCCATTAGTTGAAATGGTCAGCCAGTAGTCATATAGAGATGGATGATTAGATTACCCTGAATACATTTGTGGTAGACTACGAGTTGTGAAAACTGACCTAACCTAAACAATGTTTAGCATCATCCAGTTATTAAAGCGGATTTAAGATTGTATCATTTTTGTTACTTTCATCAAAGCATCTTCTCTCTTCCTGTATTTAATTGTATTGTATTCTAAACATTTATTGCATTATTAAacatttatttcatttatttgaaTG

Function

NR:

description
PREDICTED: protein reprimo isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470220.2 False 1407 mRNA 0.40 2 17818646 17821630
TU2042095 True 1396 lncRNA 0.40 2 17818650 17821623

Neighbor

gene id symbol gene type direction distance location
LOC110501524 LOC106586168 coding upstream 322838 17489320 ~ 17495933 (+)
LOC110501522 ermn coding upstream 474272 17342386 ~ 17344374 (+)
LOC110501521 cytip coding upstream 477721 17336457 ~ 17340925 (+)
LOC110501520 acvr1c coding upstream 487362 17302600 ~ 17331284 (+)
LOC110501518 acvr1 coding upstream 527714 17255880 ~ 17290932 (+)
LOC110501528 LOC106581829 coding downstream 47828 17869458 ~ 17904003 (+)
kalrna LOC106581831 coding downstream 279889 18101519 ~ 18386130 (+)
LOC110501533 LOC106581832 coding downstream 570207 18391837 ~ 18395440 (+)
LOC110501534 cryba2 coding downstream 580251 18401881 ~ 18404554 (+)
LOC110501535 LOC106581833 coding downstream 585079 18406709 ~ 18410510 (+)
G1783620 NA non-coding upstream 79194 17736449 ~ 17739452 (+)
G1783586 kcnj3 non-coding upstream 137545 17677406 ~ 17681101 (+)
G1783548 NA non-coding upstream 171801 17646616 ~ 17646845 (+)
G1783479 NA non-coding upstream 206481 17611325 ~ 17612165 (+)
G1783439 NA non-coding upstream 249930 17568486 ~ 17568716 (+)
G1783694 NA non-coding downstream 12955 17834585 ~ 17834854 (+)
G1783695 NA non-coding downstream 13412 17835042 ~ 17835304 (+)
G1783696 NA non-coding downstream 13730 17835360 ~ 17836209 (+)
G1783701 NA non-coding downstream 21850 17843480 ~ 17843789 (+)
G1783704 NA non-coding downstream 27687 17849317 ~ 17849549 (+)
G1783622 NA other upstream 76211 17741757 ~ 17742435 (+)
G1783087 NA other upstream 522287 17295953 ~ 17296359 (+)
G1782390 NA other upstream 776973 17006034 ~ 17041673 (+)
G1781813 NA other upstream 1545536 16272389 ~ 16273110 (+)
G1781423 LOC106581799 other upstream 1755245 16062757 ~ 16063401 (+)
G1783691 LOC106586162 other downstream 88270 17909900 ~ 17911226 (+)
G1784476 asic4 other downstream 944689 18766319 ~ 18767140 (+)
LOC110501548 LOC106586143 other downstream 1364858 19186076 ~ 19197714 (+)
ybey ybey other downstream 1748950 19570580 ~ 19572946 (+)

Expression


Co-expression Network