LOC110501533 (LOC106581832)


Basic Information

Item Value
gene id LOC110501533
gene name LOC106581832
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18391837 ~ 18395440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579177.2
GAAACACTTTTTTAAGTGTCTGACGAGATGCCGCTTGACGAGTGAGACCGCTATCTAACCTACTGATATTTGCAAGCGGAGTTAAAACATTGAAAATGGAAAACGTCTGTCTTGAAAGTTTAATCTTAAAGTTGCATGATGTTCAGGCAGTGAAATTCGGAACGTTCACGCTGAAGAGTGGAATAACCTCGCCGATTTATTTTGATCTCAGAGTTATTGTTTCTTACCCAACTCTCATGAACCAGGTGTCAAGTCTTCTTTATCAACGCGCCAAAGATGAGGACTTAAAATACAGCTCTGTGTGTGGAGTCCCATACACTGCTCTACCCTTGGCTACAATAATCTGCTCCAATCACGAGCTGCCCATGCTCATCCGAAGAAAAGAAGCCAAAGACTATGGAACTAAGAAGATTATAGAGGGGACTATTCACCCTGGAGACACGTGTCTGATCATCGAGGATGTAGTGACCAGCGGCAGCAGCGTCATGGAGACGGCTCTGGTGCTCCAGGCGGAGGGTTTAAGGGTGACTGATGCCATCGTGTTGATGGACAGGGAGCAGGGCGGCGGGGCCATGCTGGCCAAGAGGGGCATCACGCTCCACTCCGTCATCTCCATCTCCAAACTCCTCAACACCCTGTTTCAGGCAGAGCGCATTGACTCGCTCACGGCCCAGAGCGTGTGCAGGTTCATCCAGGAGAACAACACCTACAAGCCCTctggtgaggaggagaagaaCGGCTCGCCTGCAGCCAAAAAGCCCTGCAAGCCGGCGGAGCTGAGCTATGGAGACAGGGCCCAGCTCCAGAATACACACCCTCTGGCCGCCCAGCTCCTCAGACTGATGGAAGAAAAGAAGACCAACCTATGTGTGTCGGCAGACATGACGGGCTGCGAGGAGCTGCTGCAGCTGGCCGACTCTCTGGGGCCTCAGATGTGTGTGTTGAAGACCCACGTGGACATCCTTCAGGACTTCAGCCCAGCCTTCACCCAGTCACTCAAGGACCTGGGTCTCAAACACAACTTCCTCATCTTTGAGGATCGCAAGTTTGCCGACATCGGGAACACGGTCAAGCACCAGTATGAAGGTGGGCTCTACCAGATCTCCTCATGGTCTCACATCGTTAATGCCCATGCGGTACCAGGCCCTGGGGTGGTGAAGGGGCTCAGTGCAGTGGGCCGCCCGCTGGACCGCGGCTGTGTCCTCATAGGTCAGATGAGCTCCCAGGGTTCCCTAGCAACAGGGGACTACACGCAGGCTGTGGTGAAAATGGCTGAGGAGCATTCTGAGTTTGTTTTTGGGTTCATCTCTGGCGCCAAGATCAGCAACAAGCCTGAGTTTGTACACATGACTCCAGGGGTGCAGATGCAGTCAGGAGGAGATGGTCTGGGCCAGCAGTACTCCAGTCCTGATGATGTGATTTGTAAAAGAGGCTCTGACATCATCATCGTTGGCCGTGGTATCCTGGGGGCCTCTGATAGGGTGAAGGCTGCTGCAGAGTACAGAGAGGCAGGCTGGAACGCATACACCAAGAGACTCAACACATCTAGCCAAGGAGACGCTAAAGACTAGGGctacatcctaaatggcaccttattccatatatattgcactacttttgaccagagccctatgggccttggtcaaaagtagcgcatagggtgccatttggatgcTGACAAGACTAGAGCAGACACCACATCGCTAATGTGAAACATGATTATTCCCTCCAACCAGCTGCTGAGACCATTCTCTTAGCCACAACTAGTTACAAAACTTGCTAAATCAACTGAACTGCGACAATGCTAATTTTAACCTTTGGCGACAGGGAtatgtttcagtttttttttcttccatagTGTTATTTTTATATAATCTAATTTgccattttttaaatgatttgtgTTGACCAGTTATATGTAATTGtgaaatgaattaaataaatacatttgctgTAATTATCAGTTTTCTTTGAAGTCTATAAACATTTTATCAGGGGTGTTTTCTACAGATGAACAGATACAGATGGAAGGCTGTCAAAAGATTCATTCTACAAAACAAACCTTGGCATTGTGTATTAATTCATTGACATTGCAACAATCAATTGACTTGTGTTGACAACAATGTATTGGTGAACCAGTGAAGTCTTTATCCCTCTGATGATTATTTGTGATGTGCCATCCAGGTGTAGGGTTTGCTGTATACCCTAGCCATTAATAAACCGTGAATATGCTGA
>XM_036958918.1
GGGACCCTAatggggtgcacgttttgttttttgctcTAGCACTATACAGCAGATTCAAATTACCAAAGCTTGATtactagggcaaaaaacaaaacgtgtaccccttggggtcccgaggaccgagtttgagaAACGCTGAACTACGTCTGTTCGgagGTGTCAAGTCTTCTTTATCAACGCGCCAAAGATGAGGACTTAAAATACAGCTCTGTGTGTGGAGTCCCATACACTGCTCTACCCTTGGCTACAATAATCTGCTCCAATCACGAGCTGCCCATGCTCATCCGAAGAAAAGAAGCCAAAGACTATGGAACTAAGAAGATTATAGAGGGGACTATTCACCCTGGAGACACGTGTCTGATCATCGAGGATGTAGTGACCAGCGGCAGCAGCGTCATGGAGACGGCTCTGGTGCTCCAGGCGGAGGGTTTAAGGGTGACTGATGCCATCGTGTTGATGGACAGGGAGCAGGGCGGCGGGGCCATGCTGGCCAAGAGGGGCATCACGCTCCACTCCGTCATCTCCATCTCCAAACTCCTCAACACCCTGTTTCAGGCAGAGCGCATTGACTCGCTCACGGCCCAGAGCGTGTGCAGGTTCATCCAGGAGAACAACACCTACAAGCCCTctggtgaggaggagaagaaCGGCTCGCCTGCAGCCAAAAAGCCCTGCAAGCCGGCGGAGCTGAGCTATGGAGACAGGGCCCAGCTCCAGAATACACACCCTCTGGCCGCCCAGCTCCTCAGACTGATGGAAGAAAAGAAGACCAACCTATGTGTGTCGGCAGACATGACGGGCTGCGAGGAGCTGCTGCAGCTGGCCGACTCTCTGGGGCCTCAGATGTGTGTGTTGAAGACCCACGTGGACATCCTTCAGGACTTCAGCCCAGCCTTCACCCAGTCACTCAAGGACCTGGGTCTCAAACACAACTTCCTCATCTTTGAGGATCGCAAGTTTGCCGACATCGGGAACACGGTCAAGCACCAGTATGAAGGTGGGCTCTACCAGATCTCCTCATGGTCTCACATCGTTAATGCCCATGCGGTACCAGGCCCTGGGGTGGTGAAGGGGCTCAGTGCAGTGGGCCGCCCGCTGGACCGCGGCTGTGTCCTCATAGGTCAGATGAGCTCCCAGGGTTCCCTAGCAACAGGGGACTACACGCAGGCTGTGGTGAAAATGGCTGAGGAGCATTCTGAGTTTGTTTTTGGGTTCATCTCTGGCGCCAAGATCAGCAACAAGCCTGAGTTTGTACACATGACTCCAGGGGTGCAGATGCAGTCAGGAGGAGATGGTCTGGGCCAGCAGTACTCCAGTCCTGATGATGTGATTTGTAAAAGAGGCTCTGACATCATCATCGTTGGCCGTGGTATCCTGGGGGCCTCTGATAGGGTGAAGGCTGCTGCAGAGTACAGAGAGGCAGGCTGGAACGCATACACCAAGAGACTCAACACATCTAGCCAAGGAGACGCTAAAGACTAGGGctacatcctaaatggcaccttattccatatatattgcactacttttgaccagagccctatgggccttggtcaaaagtagcgcatagggtgccatttggatgcTGACAAGACTAGAGCAGACACCACATCGCTAATGTGAAACATGATTATTCCCTCCAACCAGCTGCTGAGACCATTCTCTTAGCCACAACTAGTTACAAAACTTGCTAAATCAACTGAACTGCGACAATGCTAATTTTAACCTTTGGCGACAGGGAtatgtttcagtttttttttcttccatagTGTTATTTTTATATAATCTAATTTgccattttttaaatgatttgtgTTGACCAGTTATATGTAATTGtgaaatgaattaaataaatacatttgctgTAATTATCAGTTTTCTTTGAAGTCTATAAACATTTTATCAGGGGTGTTTTCTACAGATGAACAGATACAGATGGAAGGCTGTCAAAAGATTCATTCTACAAAACAAACCTTGGCATTGTGTATTAATTCATTGACATTGCAACAATCAATTGACTTGTGTTGACAACAATGTATTGGTGAACCAGTGAAGTCTTTATCCCTCTGATGATTATTTGTGATGTGCCATCCAGGTGTAGGGTTTGCTGTATACCCTAGCCATTAATAAACCGTGAATATGCTGA

Function

NR:

description
uridine 5'-monophosphate synthase-like

GO:

id name namespace
GO:0044205 'de novo' UMP biosynthetic process biological_process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0004588 orotate phosphoribosyltransferase activity molecular_function
GO:0004590 orotidine-5'-phosphate decarboxylase activity molecular_function

KEGG:

id description
K01591 pyrF; orotidine-5'-phosphate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579177.2 False 2235 mRNA 0.48 6 18391837 18395440
XM_036958918.1 True 2146 mRNA 0.49 6 18392150 18395440

Neighbor

gene id symbol gene type direction distance location
kalrna LOC106581831 coding upstream 5707 18101519 ~ 18386130 (+)
LOC110501528 LOC106581829 coding upstream 487834 17869458 ~ 17904003 (+)
LOC110501527 LOC106581827 coding upstream 570207 17818646 ~ 17821630 (+)
LOC110501524 LOC106586168 coding upstream 896029 17489320 ~ 17495933 (+)
LOC110501522 ermn coding upstream 1047463 17342386 ~ 17344374 (+)
LOC110501534 cryba2 coding downstream 6441 18401881 ~ 18404554 (+)
LOC110501535 LOC106581833 coding downstream 11269 18406709 ~ 18410510 (+)
LOC110501537 LOC106581838 coding downstream 200938 18596378 ~ 18609528 (+)
LOC110502061 LOC106586148 coding downstream 544514 18939954 ~ 18951668 (+)
LOC110502062 NA coding downstream 591583 18987023 ~ 18988418 (+)
G1784035 LOC106581830 non-coding upstream 332701 18058334 ~ 18059136 (+)
G1784034 NA non-coding upstream 333710 18057916 ~ 18058127 (+)
G1784033 NA non-coding upstream 334962 18056670 ~ 18056875 (+)
G1784031 NA non-coding upstream 339237 18052289 ~ 18052600 (+)
G1784021 NA non-coding upstream 349701 18041937 ~ 18042136 (+)
G1784381 NA non-coding downstream 215844 18611284 ~ 18614191 (+)
G1784458 NA non-coding downstream 335729 18731169 ~ 18731408 (+)
G1784459 NA non-coding downstream 336794 18732234 ~ 18732519 (+)
G1784460 NA non-coding downstream 338116 18733556 ~ 18733779 (+)
G1784466 NA non-coding downstream 346515 18741955 ~ 18742191 (+)
G1783691 LOC106586162 other upstream 480611 17909900 ~ 17911226 (+)
G1783622 NA other upstream 649402 17741757 ~ 17742435 (+)
G1783087 NA other upstream 1095478 17295953 ~ 17296359 (+)
G1782390 NA other upstream 1350164 17006034 ~ 17041673 (+)
G1784476 asic4 other downstream 370879 18766319 ~ 18767140 (+)
LOC110501548 LOC106586143 other downstream 791048 19186076 ~ 19197714 (+)
ybey ybey other downstream 1175140 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 1221555 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 1265669 19661109 ~ 19661926 (+)

Expression


Co-expression Network