LOC110502061 (LOC106586148)


Basic Information

Item Value
gene id LOC110502061
gene name LOC106586148
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18939954 ~ 18951668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502061
ATGCCAGAATTCATTGAAGTAGTGAAAAACTATGATGCCACCAAGAGGAAATGGCTACCTGCGGAGCTGGAGCTGAAGAGACACAAGGAGCTGATGGTGAAGTCAGACATAGCCCAGGCTGCCCTGGAGGTTAAACTGAAAAAATGTCGcaaccaggtcaatgtggagatTAAGAAGAGCTATAAGCCCGAAGCAGACTTTCAGCACTTGCAGCGACAATTGCAACTGATGTGTGATATACTGGTTCACGACAGGAAGTCCAATGCATGCCTGAATGATGAGCAGAGATCTATGCTGGCCAACTTCAACCACAGGGGAGCCAATGTCACCCAACACAAGAGCAAACGATTATCTGTCATTGACGAGTCTTCATTCCCGTCTCACTCTGATATTAGTTATGATAGAACTGATGATGACACTTTATCACTGAAAAGTGGTAAACCACTTAAGTCGAGGGCAAGAGAAAAAAGGTTGATTAGTCCAGAAACGTGTGAGCCATGTTGGAAGAGGATCCAGTTCGGATAGATGGCCATGAAGTCCAGGGACTGCTTTGTGGTAGCTCATCCCGAATGTAAACAGAAGTGCCTGAACTACTCTGTCTCTGCCTCATGTGGAGCTCATGGATCTGAAGACACGTTAGAGAGCTTTGCCCCACCTACCCAGCTTAGGATCCCTCAGATAATTGTTCAGTGCGTGAATGAAATTGAGAAAAGAGGATTGGAGGAGCAATATTATTCTCAATCTGGAATAAAAGGCATTTAACGTGTTCCTGGGGGTGAGCGTATGGTGAAGCAGCATGCCCAGAGTGGATGACATACACATCATTTCCTGAGGAAACTGAAGGAGTCTCTCATCACCTTCAGGCTGCATAGAACCTTCATGGAGGCCTGTGAGATTACAGATGATGACAACAGCGCAGCAATCATTTACCAGGCCATAGCAGATCTGCCAAAGCCTAACAGAGACACTGGTTTTCCTCATGCTGTATCTGCCGAGGTAA
>TU2043071
CAATGTCACCCAACACAAGAGCAAACAATAGGCATAGTATAGTCATATCCCAGTTCTTTTTAAAATGACCTCATACTTTATTAATTTGGGTTTTGTTTCTTGATATCTCATTCGATTATCTGTCATTGACGAGTCTTCATTCCCGTCTCACTCTGATATTAGTTATGATAGAACTGATGATGACACTTTATCACTGAAAATCCACATTTAAACCAAGATTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502061 False 1000 mRNA 0.33 8 18939954 18951668
TU2043071 True 224 lncRNA 0.33 1 18941993 18942216

Neighbor

gene id symbol gene type direction distance location
LOC110501537 LOC106581838 coding upstream 330426 18596378 ~ 18609528 (+)
LOC110501535 LOC106581833 coding upstream 529444 18406709 ~ 18410510 (+)
LOC110501534 cryba2 coding upstream 535400 18401881 ~ 18404554 (+)
LOC110501533 LOC106581832 coding upstream 544514 18391837 ~ 18395440 (+)
kalrna LOC106581831 coding upstream 553824 18101519 ~ 18386130 (+)
LOC110502062 NA coding downstream 35355 18987023 ~ 18988418 (+)
stat4 stat4 coding downstream 130020 19081688 ~ 19115216 (+)
stat1b LOC106586142 coding downstream 182066 19133734 ~ 19173341 (+)
LOC110501548 LOC106586143 coding downstream 234408 19186076 ~ 19197714 (+)
LOC110501549 LOC106581842 coding downstream 248471 19200139 ~ 19213143 (+)
G1784477 NA non-coding upstream 169896 18769767 ~ 18770058 (+)
G1784466 NA non-coding upstream 197763 18741955 ~ 18742191 (+)
G1784460 NA non-coding upstream 206175 18733556 ~ 18733779 (+)
G1784459 NA non-coding upstream 207435 18732234 ~ 18732519 (+)
G1784458 NA non-coding upstream 208546 18731169 ~ 18731408 (+)
G1784606 NA non-coding downstream 1630 18953298 ~ 18954252 (+)
G1785242 NA non-coding downstream 28225 18979893 ~ 18980093 (+)
G1785250 NA non-coding downstream 33139 18984807 ~ 18985033 (+)
G1785257 NA non-coding downstream 37428 18989096 ~ 18989796 (+)
G1785312 NA non-coding downstream 95150 19046818 ~ 19047236 (+)
G1784476 asic4 other upstream 172814 18766319 ~ 18767140 (+)
G1783691 LOC106586162 other upstream 1028728 17909900 ~ 17911226 (+)
G1783622 NA other upstream 1197519 17741757 ~ 17742435 (+)
G1783087 NA other upstream 1643595 17295953 ~ 17296359 (+)
ybey ybey other downstream 618912 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 665327 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 709441 19661109 ~ 19661926 (+)
asb1 asb1 other downstream 1329345 20269646 ~ 20281952 (+)
G1784602 NA non-coding downstream 3120 18945336 ~ 18945542 (+)
G1784604 NA non-coding downstream 7940 18950156 ~ 18950523 (+)

Expression


Co-expression Network