LOC110501547 (LOC106586143)


Basic Information

Item Value
gene id LOC110501547
gene name LOC106586143
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19175567 ~ 19179266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579198.2
GGCAGTTGTGTCTCTGCATTGGAAAGCATTGTGCAGCATGATCAAAATGCATCAGATATGTTATACTGCAGAACTGTTCTTCCCCAAGTAAAACATTTCTCAACTGGTCAAGTCTGTCATCAACCTCCTGTTTGCTGCCTACACCGGAGACGTCTCAGCACTAAGGAGGTCAAATTTGCTCTTTCCTCCATGGACATGGAGCAGAGGGACTATGACTCCAGGACGGCTTTACATGTGGCAGCAGCAGAAGGACATGCAGAGGTGGTGAGCTTCCTCTTGGAGGCGTGCAAAGTGAACCCTGTTCCCATTGATAGGTGGGATAAGAACCCAATGGAAGAGGTCTTGCATTTTGGCCATCACGACATGGTCACCATCCTCCAGGACTATCAAAACAAGTACAACCCACAAGAGGCCCCCAAGAAGGACAAGGAGACAGCAGAGAACAACCTGGGCGGTCTGCTGTAGTGTAGACATCCAAGCCAGTTGATGGCGCCACGCTGCTTTTGTATCCTCTCTAATAGACTGCTGTTTCTTTGGTGGGATAAACACTTTTTGGAGTGACTTTTGTCAACTATGTATGATGACTTTATTTCTGAACTGTGTGTTTGATTAAATGTGTTTTACATTTGTTATACTC
>XM_021579200.2
ATTCTGGGCAGTTGTGTCTCTGCATTGGAAAGCATTGTGCAGCATGATCAAAATGCATCAGATATGTTATACTGCAGAACTGTTCTTCCCCAAGTAAAACATTTCTCAACTGGTCAAGTCTGTCATCAACCTCCTGTTTGCTGCCTACACCGGAGACGTCTCAGCACTAAGGAGATTTGCTCTTTCCTCCATGGACATGGAGCAGAGGGACTATGACTCCAGGACGGCTTTACATGTGGCAGCAGCAGAAGGACATGCAGAGGTGGTGAGCTTCCTCTTGGAGGCGTGCAAAGTGAACCCTGTTCCCATTGATAGGTGGGATAAGAACCCAATGGAAGAGGTCTTGCATTTTGGCCATCACGACATGGTCACCATCCTCCAGGACTATCAAAACAAGTACAACCCACAAGAGGCCCCCAAGAAGGACAAGGAGACAGCAGAGAACAACCTGGGCGGTCTGCTGTAGTGTAGACATCCAAGCCAGTTGATGGCGCCACGCTGCTTTTGTATCCTCTCTAATAGACTGCTGTTTCTTTGGTGGGATAAACACTTTTTGGAGTGACTTTTGTCAACTATGTATGATGACTTTATTTCTGAACTGTGTGTTTGATTAAATGTGTTTTACATTTGTTATACTC
>XM_021579199.2
AGACATCATGACAACATTGGTATATAGAGCAGAGCCATTTTCTGTAGGAACAGAGCTGACATGATTTCTTACATGTCAGAGTGGCATATTTGTTCTACACAATATATTCCTACCTGAACGCTTCACAATGTTGTGCCCTGCTGAATGCAGCCCAGTGATGGTTAAGAGCTGTAGGTCAAGTCTGTCATCAACCTCCTGTTTGCTGCCTACACCGGAGACGTCTCAGCACTAAGGAGGTCAAATTTGCTCTTTCCTCCATGGACATGGAGCAGAGGGACTATGACTCCAGGACGGCTTTACATGTGGCAGCAGCAGAAGGACATGCAGAGGTGGTGAGCTTCCTCTTGGAGGCGTGCAAAGTGAACCCTGTTCCCATTGATAGGTGGGATAAGAACCCAATGGAAGAGGTCTTGCATTTTGGCCATCACGACATGGTCACCATCCTCCAGGACTATCAAAACAAGTACAACCCACAAGAGGCCCCCAAGAAGGACAAGGAGACAGCAGAGAACAACCTGGGCGGTCTGCTGTAGTGTAGACATCCAAGCCAGTTGATGGCGCCACGCTGCTTTTGTATCCTCTCTAATAGACTGCTGTTTCTTTGGTGGGATAAACACTTTTTGGAGTGACTTTTGTCAACTATGTATGATGACTTTATTTCTGAACTGTGTGTTTGATTAAATGTGTTTTACATTTGTTATACTC
>XM_021579201.2
AAGACATCATGACAACATTGGTATATAGAGCAGAGCCATTTTCTGTAGGAACAGAGCTGACATGATTTCTTACATGTCAGAGTGGCATATTTGTTCTACACAATATATTCCTACCTGAACGCTTCACAATGTTGTGCCCTGCTGAATGCAGCCCAGTGATGGTTAAGAGCTGTAGGTCAAGTCTGTCATCAACCTCCTGTTTGCTGCCTACACCGGAGACGTCTCAGCACTAAGGAGATTTGCTCTTTCCTCCATGGACATGGAGCAGAGGGACTATGACTCCAGGACGGCTTTACATGTGGCAGCAGCAGAAGGACATGCAGAGGTGGTGAGCTTCCTCTTGGAGGCGTGCAAAGTGAACCCTGTTCCCATTGATAGGTGGGATAAGAACCCAATGGAAGAGGTCTTGCATTTTGGCCATCACGACATGGTCACCATCCTCCAGGACTATCAAAACAAGTACAACCCACAAGAGGCCCCCAAGAAGGACAAGGAGACAGCAGAGAACAACCTGGGCGGTCTGCTGTAGTGTAGACATCCAAGCCAGTTGATGGCGCCACGCTGCTTTTGTATCCTCTCTAATAGACTGCTGTTTCTTTGGTGGGATAAACACTTTTTGGAGTGACTTTTGTCAACTATGTATGATGACTTTATTTCTGAACTGTGTGTTTGATTAAATGTGTTTTACATTTGTTATACTC
>TU2044261
TTTTGTTAGGAGTTTATTGGTATCCAGAAGTACTGATTTGACGGGTTTGACTCTGCTTCTCCTTTAGCTGGCACATGTCCCCCACACACCCCCTGGCTGACTCTGTGTGTTGCCTGGTTCCACAAACTGCTTTCTTTTTTCACTCCAGGTCAAGTCTGTCATCAACCTCCTGTTTGCTGCCTACACCGGAGACGTCTCAGCACTAAGGAGATTTGCTCTTTCCTCCATGGACATGGAGCAGAGGGACTATGACTCCAGGACGGCTTTACATGTGGCAGCAGCAGAAGGACATGCAGAGGTGGTGAGCTTCCTCTTGGAGGCGTGCAAAGTGAACCCTGTTCCCATTGATAGGTGGGATAAGAACCCAATGGAAGAGGTCTTGCATTTTGGCCATCACGACATGGTCACCATCCTCCAGGACTATCAAAACAAGTACAACCCACAAGAGGCCCCCAAGAAGGACAAGGAGACAGCAGAGAACAACCTGGGCGGTCTGCTGTAGTGTAGACATCCAAGCCAGTTGATGGCGCCACGCTGCTTTTGTATCCTCTCTAATAGACTGCTGTTTCTTTGGTGGGATAAACACTTTTTGGAGTGACTTTTGTCAACTATGTATGATGACTTTATTTCTGAACTGTGTGTTTGATTAAATGTGTTTTACATTTGTTATACTCCTTTGTTTTACTGTAAGTGTTTTTCTTTACCTTTTGTTGTGCGCTTTGGTGACGGTGTTGCTTATTTTTGCTGTATCTTTCCTCTTTCGTCCTCTAACCTTTCcctcaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgagtccCAAATCGAAGGGCAGAATCTGATTGAATCTTTGTGACATTGGTGTGCAATATAAAGTGATATTATTATACATATGCTGCTACATGTAAATTGTATATTTATGTACTGCATAAAGTAAATATATGTAATGATATCAAGTACCAATACTTAATCTAATGGAATGTAATAGTTTAGCAGTTTGGTATTTTTCCTGGATGGCCACAATGTGTAGTAATCTTTGGCCAAACCAGGCACACTAGAGTCTATGGAGCGATATGATGTTGAATCTGAAAATTAGTTTATGTTGGTATATGTCTTGGTTAATGCCTGGTTGGAAAAAATGAAAAAGACTGTAGCTCCTAAAGACATGACTGGCCACCACTTGGGTAGAAGCACTATATGGTCCTGGAGCCTACTTTGTCACAAGTAAACAAGTTTAGGATGCCAAATGTTACCAAACATCCTACGCTTCCACTAGTCCCAGTCAAACTTATCTTGACCTTTATCAACCCTACTGCATATTCCCTTTAGCTTTCATTTCATTTTATTGTACTTTGTTTGAGGCGGC
>TU2044262
TGGCATATTTGTTCTACACAATATATTCCTACCTGAACGCTTCACAATGTTGTGCCCTGCTGAATGCAGCCCAGTGATGGTTAAGAGCTGTAGGTCAAGTCTGTCATCAACCTCCTGTTTGCTGCCTACACCGGAGACGTCTCAGCACTAAGGAGATTTGCTCTTTCCTCCATGGACATGGAGCAGAGGGACTATGACTCCAGGACGGCTTTACATGTGGCAGCAGCAGAAGGACATGCAGAGGTGGTGAGCTTCCTCTTGGAGGCGTGCAAAGTGAACCCTGTTCCCATTGATAGGTGGGATAAGAACCCAATGGAAGAGGTCTTGCATTTTGGCCATCACGACATGGTCACCATCCTCCAGGACTATCAAAACAAGTACAACCCACAAGAGGCCCCCAAGAAGGACAAGGAGACAGCAGAGAACAACCTGGGCGGTCTGCTGTAGTGTAGACATCCAAGCCAGTTGATGGCGCCACGCTGCTTTTGTATCCTCTCTAATAGACTGCTGTTTCTTTGGTGGGATAAACACTTTTTGGAGTGACTTTTGTCAACTATGTATGATGACTTTATTTCTGAACTGTGTGTTTGATTAAATGTGTTTTACATTTGTTATACTCCTTTGTTTTACTGTAAGTGTTTTTCTTTACCTTTTGTTGTGCGCTTTGGTGACGGTGTTGCTTATTTTTGCTGTATCTTTCCTCTTTCGTCCTCTAACCTTTCcctcaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgagtccCAAATCGAAGGGCAGAATCTGATTGAATCTTTGTGACATTGGTGTGCAATATAAAGTGATATTATTATACATATGCTGCTACATGTAAATTGTATATTTATGTACTGCATAAAGTAAATATATGTAATGATATCAAGTACCAATACTTAATCTAATGGAATGTAATAGTTTAGCAGTTTGGTATTTTTCCTGGATGGCCACAATGTGTAGTAATCTTTGGCCAAACCAGGCACACTAGAGTCTATGGAGCGATATGATGTTGAATCTGAAAATTAGTTTATGTTGGTATATGTCTTGGTTAATGCCTGGTTGGAAAAAATGAAAAAGACTGTAGCTCCTAAAGACATGACTGGCCACCACTTGGGTAGAAGCACTATATGGTCCTGGAGCCTACTTTGTCACAAGTAAACAAGTTTAGGATGCCAAATGTTACCAAACATCCTACGCTTCCACTAGTCCCAGTCAAACTTATCTTGACCTTTATCAACCCTACTGCATATTCCCTTTAGCTTTCATTTCATTTTATTGTACTTTGTTTGAGGCGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579198.2 False 637 mRNA 0.46 5 19176266 19178833
XM_021579200.2 False 638 mRNA 0.46 5 19176266 19178839
XM_021579199.2 False 705 mRNA 0.46 5 19176266 19179265
XM_021579201.2 False 701 mRNA 0.46 5 19176266 19179266
TU2044261 False 1373 TUCP 0.43 4 19175567 19177740
TU2044262 True 1318 TUCP 0.42 5 19175567 19179184

Neighbor

gene id symbol gene type direction distance location
LOC110501543 LOC106581841 coding downstream 139757 19034465 ~ 19036509 (-)
LOC110501541 LOC106581840 coding downstream 155126 18990520 ~ 19021140 (-)
LOC110501540 LOC106581839 coding downstream 213758 18953287 ~ 18962508 (-)
LOC110501539 LOC106586149 coding downstream 408558 18617526 ~ 18767708 (-)
LOC101268914 wnt6 coding downstream 607218 18533596 ~ 18569048 (-)
LOC110501550 LOC106581842 coding upstream 37838 19217104 ~ 19229868 (-)
slc40a1 slc40a1 coding upstream 81195 19260461 ~ 19279512 (-)
zgc:136439 LOC106581848 coding upstream 132023 19311289 ~ 19313728 (-)
osgepl1 osgepl1 coding upstream 143739 19323005 ~ 19330646 (-)
ormdl1 ormdl1 coding upstream 159486 19338752 ~ 19345840 (-)
G1785660 NA non-coding downstream 114842 19061212 ~ 19061424 (-)
G1785657 NA non-coding downstream 121544 19054501 ~ 19054722 (-)
G1785256 NA non-coding downstream 188136 18987916 ~ 18988130 (-)
G1785249 NA non-coding downstream 193033 18982963 ~ 18983233 (-)
G1785233 NA non-coding downstream 200769 18975155 ~ 18975497 (-)
G1785740 NA non-coding upstream 87682 19266948 ~ 19267696 (-)
G1785743 NA non-coding upstream 101219 19280485 ~ 19280928 (-)
G1785742 NA non-coding upstream 101741 19281007 ~ 19282658 (-)
G1785744 NA non-coding upstream 103865 19283131 ~ 19283978 (-)
G1785745 NA non-coding upstream 104765 19284031 ~ 19284379 (-)
G1783895 LOC106581829 other downstream 1272315 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2112818 17057104 ~ 17063550 (-)
b3galt1b LOC106581793 other downstream 3351052 15684423 ~ 15825221 (-)
G1781137 lrp2 other downstream 3607732 15567503 ~ 15568534 (-)
G1778224 NA other downstream 5845771 13279280 ~ 13330495 (-)
G1785753 NA other upstream 141922 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 477016 19655763 ~ 19666201 (-)
G1786832 LOC100136012 other upstream 1166433 20345699 ~ 20346014 (-)
G1787166 NA other upstream 1211250 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2611490 21788428 ~ 21913721 (-)

Expression


Co-expression Network