LOC110501549 (LOC106581842)


Basic Information

Item Value
gene id LOC110501549
gene name LOC106581842
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19200139 ~ 19213143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959582.1
tgatgatttgaaaaaagttgcatgaaaggcatgagctcgtAGGTCTTACCTGtccacacctgtccacacactaaACCTGTCCAATATGCCATACAACATGTTGTAAGGTTGGAGGGTAAATTGTCCTTACAACAGACTCTCTTAATCTCTTAATATTCAATCACCAATCGTTTACTGTAGCTCTTCTCAAAGGCCTGTATAGCCAcggcaacatacagtatgtcattgaCTCTATTGTCTTTTTAGACCAAGAGGAGGACCAGTGCCAACAGTTCCACAATTGAACAGAGCACTGATACTGATGCAGCTGAGAGAGATTTTGTTGATAATCAGAATGAGGAAGATGAGAAAGGGGGGAAGAAGGatcccctgcctcagatggaacagGATGCCATGAAGAGAAATAAAGTCAAGACCAAGAGGACCAAGAGAAACATAGTGGAGCAGGTCACTGATACAGATGCAGGTCCCTCTACATCTGTGGAATCCTCTGGGATGGCAGTTCAGGGGACATCTCACCAGGGACAATCTAATGAAAAGATCCTAAGTGAGTGTGTCTCCAGGGCCTGTCAGACCAGGGCTCTTGACCTCCCGCCAATCAATCCGGATGCTTTCAACCCGATTATCATCCGGTTTCTGGAAAAACTTACTGAGGAGCAATGGAGGCAGTTAAGCATTGGCAGGATGGACCCTGTGATGAGGGCATTGCTTGCAGAGATGTGCCTGGAGATTGTGCGGTTTGTATCTGAGGCCATCCTGGAGGTCATCATCCCTGCAATTTTCCGTTTTGTACGGATATACAGCCATGTGTCTCCAGTATCCGGCAAGTCTCTGACAGAATCAGAGAGATCTTCTAGCACAAACCTGAAGGTTCGAACGAGAGGCAGCAGCAAATCCTCAAGGTCTTGCACGGCCAAATCAAGCTCCTCTCGTAATGGTGTACTCAGAAGGTCAACAAGAGGAACCACTGCACTCCAACACCTTCCCAGAACCAGACCCCTGCTATCAGTGAAACAGcAATTGTCAATGATCAAGAATCCTGCCGAACAGAGAGTGTATGCTCCATCAAGAAGAAACCAAAGAAGCGTTCGCTAA
>TU2043880
ACTCAAGCCTACCCCCAGAATCTGAAAATCAAAAAGATTTTCAAGGCTGTCTACAAGGGGCTTCTTCAAGAATTTGGGTCAGAGAAGATGCTCCAGGTTGCAATGAAGTCAACGGATTATGCATTTGACGATGCCCTGGTCAAATCATTAACTAGGGAATTGCTAACTAAATGCAATGAGGCTAGCTCTTCACCTCCCTCCATGACCCAGTTGTCATCACACAATGCACTTGGCAGTGACGAGGTAGGTAATTCTGGGCTTCCAACAACTGGTAGAAaggaaaagaagagaggaagattcaACGCTCTCTGTGGATTCAACCCAAAGGTACATATGTCATCAAAATACAAattataaagattatttttattcaTTACGTACAGTATGATGGTAAACACTGATACCTTTTGTGTGCAATTTCTCCTACTGTACAAATGACTGTTTGTTTTCCAGTGTACTCAGAAGGTCAACAAGAGGAACCACTGCACTCCAACACCTTCCCAGAACCAGACCCCTGCTATCAGTGAAACAGcAATTGTCAATGATCAAGAATCCTGCCGAACAGAGAGTGTATGCTCCATCAAGAAGAAACCAAAGAAGCGTTCGCTAATTTCTAGGATGTTTTCAGCTATAGGCAAAGCCTTGTCCAGTCCCTTTACTTCCTGCTATAAAAAGAAGAG

Function

NR:

description
uncharacterized protein LOC110525247

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959582.1 False 1095 mRNA 0.47 7 19200139 19213073
TU2043880 True 680 lncRNA 0.42 2 19211103 19213143

Neighbor

gene id symbol gene type direction distance location
LOC110501548 LOC106586143 coding upstream 6620 19186076 ~ 19197714 (+)
stat1b LOC106586142 coding upstream 26798 19133734 ~ 19173341 (+)
stat4 stat4 coding upstream 84923 19081688 ~ 19115216 (+)
LOC110502062 NA coding upstream 211721 18987023 ~ 18988418 (+)
LOC110502061 LOC106586148 coding upstream 248471 18939954 ~ 18951668 (+)
LOC110501551 wdr75 coding downstream 16955 19230028 ~ 19256910 (+)
LOC110501555 asnsd1 coding downstream 89306 19302379 ~ 19308366 (+)
asnsd1 asnsd1 coding downstream 94849 19307922 ~ 19311501 (+)
ankar ankar coding downstream 100741 19313814 ~ 19324650 (+)
adat3 NA coding downstream 124543 19337616 ~ 19338467 (+)
G1785365 NA non-coding upstream 16645 19140783 ~ 19183494 (+)
G1785363 NA non-coding upstream 18193 19138589 ~ 19181946 (+)
G1785358 NA non-coding upstream 66815 19132974 ~ 19133324 (+)
G1785299 NA non-coding upstream 73159 19112567 ~ 19126980 (+)
G1785329 NA non-coding upstream 129748 19070167 ~ 19070391 (+)
G1785379 NA non-coding downstream 44958 19258031 ~ 19259223 (+)
G1785375 slc40a1 non-coding downstream 47568 19260641 ~ 19265142 (+)
G1785412 NA non-coding downstream 66652 19279725 ~ 19279935 (+)
G1785413 NA non-coding downstream 67403 19280476 ~ 19282878 (+)
G1785415 NA non-coding downstream 70919 19283992 ~ 19284334 (+)
G1784476 asic4 other upstream 432999 18766319 ~ 18767140 (+)
kalrna LOC106581831 other upstream 977413 18101519 ~ 18386130 (+)
G1783691 LOC106586162 other upstream 1288913 17909900 ~ 17911226 (+)
G1783622 NA other upstream 1457704 17741757 ~ 17742435 (+)
ybey ybey other downstream 357507 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 403922 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 448036 19661109 ~ 19661926 (+)
asb1 asb1 other downstream 1067940 20269646 ~ 20281952 (+)
G1786330 NA other downstream 1070108 20283181 ~ 20284571 (+)

Expression


Co-expression Network