LOC110501551 (wdr75)


Basic Information

Item Value
gene id LOC110501551
gene name wdr75
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19230028 ~ 19256910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579207.2
TTGAATGAACAAGGACAGACGCATGCCATGTGTTGTTGGGTCAGAGGGGAAGGTTCATAGTTGAAATTCGAAAAGATGGTGGCTCACGCAGAAATACGCGTGGTTCACCTTGGTGGCAGCAAAATAAACTTCAGGGAGCCAGTTATTACAAATGATTCCAGGTTCCTCTTGTGTGCCTCGGGGGAGTCAGTGAAAGTGTACAGTTCCAGCTCCGAGGAATGCGTCCATGATTTGCAGGGACACACAGACCTGGTGTCAGGCATTGTCCGCAACCCTTCAAACCACCTGCAGGTATACTCGTGCTCAGCAGATGGCACTGTCCGATTGTGGGACTTCACAGATGGCATCCTCATCAAGACCTTCATTATTGGGTACCCCATCTACTCCATATACGTCTCTGAAAATCATGGAGGAGTTGTGTTTGTCGTCGTCCCAATGGCAAATGACAAAAGCTCTGagCTGTTCCAGCTGGTGGCTGTTCATCTGCCCTTAAGTGGGGACCAGGAAGTGGAGGCGCGAGAGCTCTCGGCCGTCCTGTGTGATGTCAGCCCCTCTGGGGCTGCCTCCTTTGGCAGAAAGGGTGAATACATTGCTGCCGTCAAAGGTTTACAGCTTGAGGTGTTTTTCTTCAAGAATCAGAAGTCTCACAGGTTTTTCCTCAAGCCGGGGAATAAGAAAGGGGCTAAGAATGCCTTCACCTGTGTCTCGTGCCACCCTAAAGAGGACTGTATCGCCACAGGTCACGAGGACGGCAAAATTCGCCTGTGGAGAAACTTCAACCAGAAAAAGGAGTACACATACTCCACCCTACACTGGCACCACGGCGCAGTCAACACACTGCAATTCACCCCTGAAGGCACCAACCTGCTAAGCGGGGGGATAGAATCGGTGCTGGTCCAGTGGCATTACACACAAGAGAACCAGAAGGACTTCCTGCCGCGCCTGGGCGGCGCAATCACACACATTGCCGTGTCACCTGACGGTTCATTGTTCTGCACCTCCCACTCTGACAACAAAATCACTATCATCCAGAGCTGTGTTAAAGTGTCGGCCATCATCCAGGGGCTGGTCAAGGGCGAGGGTGTGCGGACAGACCTGACGATCGACCCGCGTAGTAAAGCCTTGGTGCTCAACGGGAAACCAGGCCACTTGCAGTTCTACTCTCTCCATCGCGACAAGCTACTCTACAATTTGGACATAGTACAGCAGGAGTACATCCACGAAGAGGGTCTGGACCAGTTTGAAGTGGTCAAGGCGGCGTTCGACACCCGCGGCGACTGGCTTGCTACGGTGGAGGAGAGGACGCAAAAAGGCTCTGAGTTAGAAATCAATTTGAAGCTTTGGGCGTACGATGAGCAAACTCAGAGTTTTATGCTGAACACTACAGTCACAGCCCCCCACGAGGACCAGATTATAGCCATGTGCTTCAGCCCCTCACCAGAGATCACCATGCTGGTGACCATCAGCTTCGACGGCCACTTCAAAGCCTGGCTGCTGGCAGACCACTCGGACACCAAGGCAGAGGGCGCCTCCTGGTCATGTGACTTTGTGGGCGGGTACCACCACCTTAAGcctggctgctgctgcttctcGGCCGACGGCTCCCTATTGGCTGTCGGTTTCCAGGAAGTGGTGACTGTATGGAGCCCTTCCTGGGAGCTGCTTACCACCCTGTCCCAGCCCCCAGGGGCCATCAGGGAACTTTGTTTTGGAAGGTTAAGCTGTTCCAAGTACCTGTTGGGGACCAGCACCAAGAACCAACTCTGTTGCTGGAACCTCCTCACCTGCTCACTGGAGTGGAGTACCCCCGTGGATGTGAGCCTGCTCCAGGCTGACCCACTGTCTGAGAACATGGCTGCCTTCTGCAGTCAGTCTGGCTGCTCCGACTTGTTTGTGTTCAAGCCCGGCGAGCCGCGGCCCCTCTACTCCCAGAAGGCCTTGTGCACGGGCAAGGTACAGCGTGCCGTCTTTGCCCCGCGCGACCAGATGCTGGAGAGCTGCGAGGAGCACGCTCAGTGGCTCAACAGATCCCAACTCTACTTCCTCACCCAACACATGGATTTGATGACGTTTAGCACTAAGACTGAGGAGGACAGACTGTTGGCGTCTAGTAAACTGCTCATGGTGGACGACAGTGTTGCCGTGACGCCGTTCTATCTGTTGCTAGGGAAACACAGGCAGCAGCAAGAAGCGCTGACCAATCCCATGGCAGAAAGGATTCAGCTACCACAGGGTTCCATTGCCATCAAGGAGctGCTATACACCCCAGCCCACGTCCTGCCTTCAGCCTCGTTCCTCTGCTCTATGTTCGTACGCTCCCTGCTCATCTCCAGCTCTTCTGCCAGCGAGGAAAAGGAACCTGTAGAAGAGGAAATGGAGAGTGAGGAAGAGGACTCTGAAGGGGAAGCAGAGCTCCGAGACGCCAGGCAGGATCTGGGGGGGTCGGCAGCATGGGGCCCAGGTGAGGAGTTGGGGGCACCAGCTCTCACGAAAGCCCAGGAGCGGGAACTGAGGAGAGTGAAACATTTTGACCACAGCTGGCTCAGTAGTGTCCTGGAATGTTAACCTTTTACCaagcccaaacacacacacacacacacacacacacacacacacacactttacccagTCATAGTTTTCCTATGGCTGTATTTTGATGTAATAAAATATTTCAATTTTCAAATG
>XM_021579208.2
GAATGAACAAGGACAGACGCATGCCATGTGTTGTTGGGTCAGAGGGGAAGGTTCATAGTTGAAATTCGAAAAGATGGTGGCTCACGCAGAAATACGCGTGGTTCACCTTGGTGGCAGCAAAATAAACTTCAGGGAGCCAGTTATTACAAATGATTCCAGGTTCCTCTTGTGTGCCTCGGGGGAGTCAGTGAAAGTGTACAGTTCCAGCTCCGAGGAATGCGTCCATGATTTGCAGGGACACACAGACCTGGTGTCAGGCATTGTCCGCAACCCTTCAAACCACCTGCAGGTATACTCGTGCTCAGCAGATGGCACTGTCCGATTGTGGGACTTCACAGATGGCATCCTCATCAAGACCTTCATTATTGGGTACCCCATCTACTCCATATACGTCTCTGAAAATCATGGAGGAGTTGTGTTTGTCGTCGTCCCAATGGCAAATGACAAAAGCTCTGagCTGTTCCAGCTGGTGGCTGTTCATCTGCCCTTAAGTGGGGACCAGGAAGTGGAGGCGCGAGAGCTCTCGGCCGTCCTGTGTGATGTCAGCCCCTCTGGGGCTGCCTCCTTTGGCAGAAAGGGTGAATACATTGCTGCCGTCAAAGGTTTACAGCTTGAGGTGTTTTTCTTCAAGAATCAGAAGTCTCACAGGTTTTTCCTCAAGCCGGGGAATAAGAAAGGGGCTAAGAATGCCTTCACCTGTGTCTCGTGCCACCCTAAAGAGGACTGTATCGCCACAGGTCACGAGGACGGCAAAATTCGCCTGTGGAGAAACTTCAACCAGAAAAAGGAGTACACATACTCCACCCTACACTGGCACCACGGCGCAGTCAACACACTGCAATTCACCCCTGAAGGCACCAACCTGCTAAGCGGGGGGATAGAATCGGTGCTGGTCCAGTGGCATTACACACAAGAGAACCAGAAGGACTTCCTGCCGCGCCTGGGCGGCGCAATCACACACATTGCCGTGTCACCTGACGGTTCATTGTTCTGCACCTCCCACTCTGACAACAAAATCACTATCATCCAGAGCTGTGTTAAAGTGTCGGCCATCATCCAGGGGCTGGTCAAGGGCGAGGGTGTGCGGACAGACCTGACGATCGACCCGCGTAGTAAAGCCTTGGTGCTCAACGGGAAACCAGGCCACTTGCAGTTCTACTCTCTCCATCGCGACAAGCTACTCTACAATTTGGACATAGTACAGCAGGAGTACATCCACGAAGAGGGTCTGGACCAGTTTGAAGTGGTCAAGGCGGCGTTCGACACCCGCGGCGACTGGCTTGCTACGGTGGAGGAGAGGACGCAAAAAGGCTCTGAGTTAGAAATCAATTTGAAGCTTTGGGCGTACGATGAGCAAACTCAGAGTTTTATGCTGAACACTACAGTCACAGCCCCCCACGAGGACCAGATTATAGCCATGTGCTTCAGCCCCTCACCAGAGATCACCATGCTGGTGACCATCAGCTTCGACGGCCACTTCAAAGCCTGGCTGCTGGCAGACCACTCGGACACCAAGGAGGGCGCCTCCTGGTCATGTGACTTTGTGGGCGGGTACCACCACCTTAAGcctggctgctgctgcttctcGGCCGACGGCTCCCTATTGGCTGTCGGTTTCCAGGAAGTGGTGACTGTATGGAGCCCTTCCTGGGAGCTGCTTACCACCCTGTCCCAGCCCCCAGGGGCCATCAGGGAACTTTGTTTTGGAAGGTTAAGCTGTTCCAAGTACCTGTTGGGGACCAGCACCAAGAACCAACTCTGTTGCTGGAACCTCCTCACCTGCTCACTGGAGTGGAGTACCCCCGTGGATGTGAGCCTGCTCCAGGCTGACCCACTGTCTGAGAACATGGCTGCCTTCTGCAGTCAGTCTGGCTGCTCCGACTTGTTTGTGTTCAAGCCCGGCGAGCCGCGGCCCCTCTACTCCCAGAAGGCCTTGTGCACGGGCAAGGTACAGCGTGCCGTCTTTGCCCCGCGCGACCAGATGCTGGAGAGCTGCGAGGAGCACGCTCAGTGGCTCAACAGATCCCAACTCTACTTCCTCACCCAACACATGGATTTGATGACGTTTAGCACTAAGACTGAGGAGGACAGACTGTTGGCGTCTAGTAAACTGCTCATGGTGGACGACAGTGTTGCCGTGACGCCGTTCTATCTGTTGCTAGGGAAACACAGGCAGCAGCAAGAAGCGCTGACCAATCCCATGGCAGAAAGGATTCAGCTACCACAGGGTTCCATTGCCATCAAGGAGctGCTATACACCCCAGCCCACGTCCTGCCTTCAGCCTCGTTCCTCTGCTCTATGTTCGTACGCTCCCTGCTCATCTCCAGCTCTTCTGCCAGCGAGGAAAAGGAACCTGTAGAAGAGGAAATGGAGAGTGAGGAAGAGGACTCTGAAGGGGAAGCAGAGCTCCGAGACGCCAGGCAGGATCTGGGGGGGTCGGCAGCATGGGGCCCAGGTGAGGAGTTGGGGGCACCAGCTCTCACGAAAGCCCAGGAGCGGGAACTGAGGAGAGTGAAACATTTTGACCACAGCTGGCTCAGTAGTGTCCTGGAATGTTAACCTTTTACCaagcccaaacacacacacacacacacacacacacacacacacacactttacccagTCATAGTTTTCCTATGGCTGTATTTTGATGTAATAAAATATTTCAATTTTCAAATG

Function

symbol description
wdr75 Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; nervous system; and segmental plate. Orthologous to human WDR75 (WD repeat domain 75).

NR:

description
WD repeat-containing protein 75-like isoform X2

GO: NA

KEGG:

id description
K14552 NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579207.2 False 2685 mRNA 0.54 20 19230028 19256910
XM_021579208.2 True 2680 mRNA 0.54 20 19230030 19256910

Neighbor

gene id symbol gene type direction distance location
LOC110501549 LOC106581842 coding upstream 16955 19200139 ~ 19213143 (+)
LOC110501548 LOC106586143 coding upstream 36509 19186076 ~ 19197714 (+)
stat1b LOC106586142 coding upstream 56687 19133734 ~ 19173341 (+)
stat4 stat4 coding upstream 114812 19081688 ~ 19115216 (+)
LOC110502062 NA coding upstream 241610 18987023 ~ 18988418 (+)
LOC110501555 asnsd1 coding downstream 45469 19302379 ~ 19308366 (+)
asnsd1 asnsd1 coding downstream 51012 19307922 ~ 19311501 (+)
ankar ankar coding downstream 56904 19313814 ~ 19324650 (+)
adat3 NA coding downstream 80706 19337616 ~ 19338467 (+)
pms1 pms1 coding downstream 93714 19350624 ~ 19414697 (+)
G1785365 NA non-coding upstream 46534 19140783 ~ 19183494 (+)
G1785363 NA non-coding upstream 48082 19138589 ~ 19181946 (+)
G1785358 NA non-coding upstream 96704 19132974 ~ 19133324 (+)
G1785299 NA non-coding upstream 103048 19112567 ~ 19126980 (+)
G1785379 NA non-coding downstream 1121 19258031 ~ 19259223 (+)
G1785375 slc40a1 non-coding downstream 3731 19260641 ~ 19265142 (+)
G1785412 NA non-coding downstream 22815 19279725 ~ 19279935 (+)
G1785413 NA non-coding downstream 23566 19280476 ~ 19282878 (+)
G1785415 NA non-coding downstream 27082 19283992 ~ 19284334 (+)
G1784476 asic4 other upstream 462888 18766319 ~ 18767140 (+)
kalrna LOC106581831 other upstream 1007302 18101519 ~ 18386130 (+)
G1783691 LOC106586162 other upstream 1318802 17909900 ~ 17911226 (+)
G1783622 NA other upstream 1487593 17741757 ~ 17742435 (+)
ybey ybey other downstream 313670 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 360085 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 404199 19661109 ~ 19661926 (+)
asb1 asb1 other downstream 1024103 20269646 ~ 20281952 (+)
G1786330 NA other downstream 1026271 20283181 ~ 20284571 (+)

Expression


Co-expression Network