ormdl1 (ormdl1)


Basic Information

Item Value
gene id ormdl1
gene name ormdl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19338752 ~ 19345840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579219.2
tgttttgaaaggctggcttttattttttttttaggatTCCTAATTGCAACTCAAAAGTGACGTCATCGTTTGTGCCGCTAGTGAAGGGGAGCTTGGCCTTCTGTCGTTCTTACTGCCACGTTTAAAAACCGATTCATAACAAGAAACAAAATGAATGTTGGCGTAGCGCACAGTGAGGTGAACCCCAACACTCGGGTCATGAACAGTCGAGGGATCTGGCTCACCTATGCCCTCGGTGTTGGAATGCTTCACATTGTGCTCTTGAGCATACCCTTCTTCAGTGTACCTGTGGTGTGGACTCTCACAAATGTTATACACAATTTTGGGATGTATGTCTTCATGCATGCAGTGAAAGGCACTCCGTTTGAGACCCCAGACCAAGGCAAAGCCCGGCTCCTGACACATTGGGAACAGTTGGACTATGGCGTGCAGTTCACATCATCCAGAAAATTCTTCACCATCTCCCCAATCATTTTATATTTTCTTGCAAGTTTCTACACGAAGTACGACACTACACACTTTGTCATAAACACTGCCTCCCTTTTGAGTGTGCTGATCCCCAAATTGCCACAACTACACGGAGTCCGCATCTTTGGCATCAACAAGTATTAAGCTGAGTGTTGAGAGTCAGTGGTGTGACAAACTCTCAAAGGAGCTATTGGCTCATAGCAAGATGAATAGTTAACCCTTTTTACTCTGTACCACTGGAGTTTGTACTGAGCAGTTTTGTACGGTATGTGTAATTGTCACTCATTGTTTAGATACGCCAGGTTAAACTATAGTGGGAGACTTGGAGAGCGACGATAATTCCATGTGCATTACTAACTTAAGTAaatatttaattattattatttttaatctaCATAGACCTGGGCTGGCCCATGTTTAAGAAGTGGAGCTTTttttgttctgtttttgtttgCCCTCACTTCACACAGTGACAAAGATTGCGTTCCTCCTTGTTACAATAAATGTTTCTCATCGTAACCGAAAGCCTTGGAAATATCAGATGCATTTTTAAAGATAATTTCTCCATAAAAGTAGGAGCCTATGGTTCAATGTTTGACACTTATTTTTAGATGGGTTATCATTGCTGAAAAGAACTGAACAATATGAAATACACATTTCTTATGATTTCCTTGGTATATGAATCATTTCTCATTGTTACTCAGTTATATAGGGCAGGCATTTTTTTTCAGTGTATATAGTTGTATGTATAGGTTAATGTCTTTCTTGATGATTTTTCATAAGATGTGTTGTCAGATGAAAGTGTTTACTGAGACGGGTCTACGGTTTGCCTATGTACCTATATTCATGTCGCTGTACTTGTTTAGGAGATCTCCTGGATGGTATTACCAAGGTCCTGTTCTGTTTGGTCATGGCTTATCCACGGTATTCTTGGAGCTTTGTCAGCCCCTGTATCTAACATCATTAAAACATTTGTGCCCTTAAAAGCAGTGTGTATGTCTTAACTGGCTAAATTTGAGGGAAATGGATGGAAACCCATATTTTGACATGCACTGACTACAGTGGGAGATGAGCATAAAAACAAGCTGTGACAAAAGCTTTGTTTAAAATGAAATGCAATAAAGTAAAACAATTTATGTAATCCAAAA
>XM_021579218.2
GcaatgttttgaaaggctggcttttattttttttttaggatTCCTAATTGCAACTCAAAAGTGACGTCATCGTTTGTGCCGCTAGTGAAGGGGAGCTTGGCCTTCTGTCGTTCTTACTGCCACGTTTAAAAACCGATTCATAACAAGGTACTCCAAAACAAAATGAATGTTGGCGTAGCGCACAGTGAGGTGAACCCCAACACTCGGGTCATGAACAGTCGAGGGATCTGGCTCACCTATGCCCTCGGTGTTGGAATGCTTCACATTGTGCTCTTGAGCATACCCTTCTTCAGTGTACCTGTGGTGTGGACTCTCACAAATGTTATACACAATTTTGGGATGTATGTCTTCATGCATGCAGTGAAAGGCACTCCGTTTGAGACCCCAGACCAAGGCAAAGCCCGGCTCCTGACACATTGGGAACAGTTGGACTATGGCGTGCAGTTCACATCATCCAGAAAATTCTTCACCATCTCCCCAATCATTTTATATTTTCTTGCAAGTTTCTACACGAAGTACGACACTACACACTTTGTCATAAACACTGCCTCCCTTTTGAGTGTGCTGATCCCCAAATTGCCACAACTACACGGAGTCCGCATCTTTGGCATCAACAAGTATTAAGCTGAGTGTTGAGAGTCAGTGGTGTGACAAACTCTCAAAGGAGCTATTGGCTCATAGCAAGATGAATAGTTAACCCTTTTTACTCTGTACCACTGGAGTTTGTACTGAGCAGTTTTGTACGGTATGTGTAATTGTCACTCATTGTTTAGATACGCCAGGTTAAACTATAGTGGGAGACTTGGAGAGCGACGATAATTCCATGTGCATTACTAACTTAAGTAaatatttaattattattatttttaatctaCATAGACCTGGGCTGGCCCATGTTTAAGAAGTGGAGCTTTttttgttctgtttttgtttgCCCTCACTTCACACAGTGACAAAGATTGCGTTCCTCCTTGTTACAATAAATGTTTCTCATCGTAACCGAAAGCCTTGGAAATATCAGATGCATTTTTAAAGATAATTTCTCCATAAAAGTAGGAGCCTATGGTTCAATGTTTGACACTTATTTTTAGATGGGTTATCATTGCTGAAAAGAACTGAACAATATGAAATACACATTTCTTATGATTTCCTTGGTATATGAATCATTTCTCATTGTTACTCAGTTATATAGGGCAGGCATTTTTTTTCAGTGTATATAGTTGTATGTATAGGTTAATGTCTTTCTTGATGATTTTTCATAAGATGTGTTGTCAGATGAAAGTGTTTACTGAGACGGGTCTACGGTTTGCCTATGTACCTATATTCATGTCGCTGTACTTGTTTAGGAGATCTCCTGGATGGTATTACCAAGGTCCTGTTCTGTTTGGTCATGGCTTATCCACGGTATTCTTGGAGCTTTGTCAGCCCCTGTATCTAACATCATTAAAACATTTGTGCCCTTAAAAGCAGTGTGTATGTCTTAACTGGCTAAATTTGAGGGAAATGGATGGAAACCCATATTTTGACATGCACTGACTACAGTGGGAGATGAGCATAAAAACAAGCTGTGACAAAAGCTTTGTTTAAAATGAAATGCAATAAAGTAAAACAATTTATGTAATCCAAAA

Function

symbol description
ormdl1 Predicted to be involved in cellular sphingolipid homeostasis; ceramide metabolic process; and negative regulation of ceramide biosynthetic process. Predicted to act upstream of or within negative regulation of sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of SPOTS complex. Orthologous to human ORMDL1 (ORMDL sphingolipid biosynthesis regulator 1).

NR:

description
hypothetical protein cypCar_00042736, partial

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579219.2 False 1616 mRNA 0.39 4 19338752 19345836
XM_021579218.2 True 1628 mRNA 0.40 4 19338752 19345840

Neighbor

gene id symbol gene type direction distance location
osgepl1 osgepl1 coding downstream 8106 19323005 ~ 19330646 (-)
zgc:136439 LOC106581848 coding downstream 25024 19311289 ~ 19313728 (-)
slc40a1 slc40a1 coding downstream 59240 19260461 ~ 19279512 (-)
LOC110501550 LOC106581842 coding downstream 108884 19217104 ~ 19229868 (-)
LOC110501547 LOC106586143 coding downstream 159486 19175567 ~ 19179266 (-)
mstnb LOC100135919 coding upstream 93356 19439196 ~ 19442706 (-)
LOC110501563 NA coding upstream 177221 19523061 ~ 19525499 (-)
lss lss coding upstream 184558 19530398 ~ 19544185 (-)
LOC110501564 mcm3ap coding upstream 198518 19544358 ~ 19570630 (-)
LOC110501567 usp37 coding upstream 226605 19572445 ~ 19603558 (-)
G1785752 ankar non-coding downstream 18913 19319492 ~ 19319839 (-)
G1785748 NA non-coding downstream 47164 19291367 ~ 19291588 (-)
G1785745 NA non-coding downstream 54373 19284031 ~ 19284379 (-)
G1785744 NA non-coding downstream 54774 19283131 ~ 19283978 (-)
G1785742 NA non-coding downstream 56094 19281007 ~ 19282658 (-)
G1785857 NA non-coding upstream 140288 19486128 ~ 19486335 (-)
G1785861 NA non-coding upstream 144679 19490519 ~ 19490733 (-)
G1786379 NA non-coding upstream 340650 19686490 ~ 19687169 (-)
G1786380 NA non-coding upstream 341925 19687765 ~ 19688406 (-)
G1786566 NA non-coding upstream 628480 19974320 ~ 19974561 (-)
G1785753 NA other downstream 16893 19321188 ~ 19321859 (-)
G1783895 LOC106581829 other downstream 1434801 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2275304 17057104 ~ 17063550 (-)
b3galt1b LOC106581793 other downstream 3513538 15684423 ~ 15825221 (-)
znf142 znf142 other upstream 310442 19655763 ~ 19666201 (-)
G1786832 LOC100136012 other upstream 999859 20345699 ~ 20346014 (-)
G1787166 NA other upstream 1044676 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2444916 21788428 ~ 21913721 (-)
G1789581 NA other upstream 3072290 22418130 ~ 22419498 (-)

Expression


Co-expression Network