LOC110501563


Basic Information

Item Value
gene id LOC110501563
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19523061 ~ 19525499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579223.2
acacacacagagagaaagaaagagagatgtatGTTTAGTTTATGACGAGAGATTTGGGGAGTGCTAAAGGAAGcgaggtgtgtctctctctacagtataattACGAGTTAATTCTCTGGGAAGCCATGCAGACAGAACCCTGACAGGAACTACATCTCAGGTTTTGATCTGAAACATCGAGATGTGGGGTCACAACCAAGGAAACCAGCATCCCTCTGGCTACAACGTGAACCCAAGCGGGTGCGAACCGCCAATGCCAGGTGGGGGACAACCTGGCGGGTGCACCATTGGTGCCATCCTGACCCCATTATGCCCTCCCTACCAGCCCCCCTCCACTTGCTACCCTGTGCCACCATCTTATCCAGTACAGGGTCCCCATGGAGGTCATGGGCATGGGCACGATCATGGGCACGGACCTCATGGCCATGATCATGGTCACGGGCACGGACATCATGGCCATGATCATGGTCACGGGCATCGTGGAGGTCACGGTCATGGAGGGCACGGTCATGGAGGACACGGAGGGCACGGTCGCGGAGGGCATGGTCATGGTCATGGGCACGGTCATGGGCATGGTCATGGTCATGGTCATGGGCACGGTCATGGATGCAGGCACAGGCACAAGCATGGGCATTGGCATGGGGGTTGTCACAAGAAAGGGAAGCAGAGTCATGGGAGTTCAAGCAGCTCCTGCAGCAGTGACTCCGACTAGAGCCTGCAGTCAGAGGGACATGACTTATCCTCTTATCAGCCGTAAGAGACCTGGATCTCTCTCCCCAGTTCTTTACTATAGCCCCAGAACCAATCCCTAATCCCCATCCCTAATATATGGATGTTACAAACCCACATCTCTCCCGCTCATATGTCTGATTTTTTTTCAAAGCATGATGGTTTCTTTTATGTAAAATAATTAAAGGACACAGAGGGAATCTTATTTGTTCTTGTTGTATgccaaaatgattaaaaataaataactgtCCAATTACTATGTACATCATAACTACAACCCACAGTATACGTTTTTGATATTTCAATTATTGTGGGCCTGGGGAGTTCTGATTTGTTTCTGGGTATTTGGTTATCCGAGCCCAGCTATAATTGTAACCCTGCATAGTTTCCTCATAAAGTCAAGCATTCCTAAACATTGATTTGTAGGAACCTAAACTCAAATGTGGGcgggttgcctgttttgcatgttattttgtcatgaatacatgtcacatatcagtttgcacacaatataaacaaaaatatatccataagttaataaagctgcatacaaa

Function

NR:

description
uncharacterized protein LOC109871087

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579223.2 True 1283 mRNA 0.47 4 19523061 19525499

Neighbor

gene id symbol gene type direction distance location
mstnb LOC100135919 coding downstream 80355 19439196 ~ 19442706 (-)
ormdl1 ormdl1 coding downstream 177221 19338752 ~ 19345840 (-)
osgepl1 osgepl1 coding downstream 192415 19323005 ~ 19330646 (-)
zgc:136439 LOC106581848 coding downstream 209333 19311289 ~ 19313728 (-)
slc40a1 slc40a1 coding downstream 243549 19260461 ~ 19279512 (-)
lss lss coding upstream 4899 19530398 ~ 19544185 (-)
LOC110501564 mcm3ap coding upstream 18859 19544358 ~ 19570630 (-)
LOC110501567 usp37 coding upstream 46946 19572445 ~ 19603558 (-)
znf142 znf142 coding upstream 130264 19655763 ~ 19666201 (-)
vil1 vil1 coding upstream 218221 19743720 ~ 19763860 (-)
G1785861 NA non-coding downstream 32328 19490519 ~ 19490733 (-)
G1785857 NA non-coding downstream 36726 19486128 ~ 19486335 (-)
G1785752 ankar non-coding downstream 203222 19319492 ~ 19319839 (-)
G1785748 NA non-coding downstream 231473 19291367 ~ 19291588 (-)
G1785745 NA non-coding downstream 238682 19284031 ~ 19284379 (-)
G1786379 NA non-coding upstream 160991 19686490 ~ 19687169 (-)
G1786380 NA non-coding upstream 162266 19687765 ~ 19688406 (-)
G1786566 NA non-coding upstream 448821 19974320 ~ 19974561 (-)
G1786579 NA non-coding upstream 463369 19988868 ~ 19989288 (-)
G1786646 NA non-coding upstream 556887 20082386 ~ 20082662 (-)
G1785753 NA other downstream 201202 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 343877 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 1619110 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2459613 17057104 ~ 17063550 (-)
b3galt1b LOC106581793 other downstream 3697847 15684423 ~ 15825221 (-)
G1786832 LOC100136012 other upstream 820200 20345699 ~ 20346014 (-)
G1787166 NA other upstream 865017 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2265257 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2892631 22418130 ~ 22419498 (-)

Expression


Co-expression Network