lss (lss)


Basic Information

Item Value
gene id lss
gene name lss
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19530398 ~ 19544185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958935.1
GGGAAGGGCAGTCCTCTGTGGCACAAGTTAGTGTTTATCCAACGGAAATATTTTGAAAAGAGAACTTCAATTCCCACAGTATCACAAATGGGGGCCGATCCTGTGGATCAGCTGAAGTTTGCGGAGGATTTAATTCATTCATAAGGTTTTAATGATGACCGAGGGAACATGCCTTCGTAGGAGGGGGGGGCCGTACAAGACCGAGCCAGCGACAGACCTGACCCGCTGGAGGCTGAGTAACACAGAGGGCAGGCAGACATGGCGCTATGTAGAGGATCAAGACACATCAGACAGGGAGCAGACTATGCTTGAAGCCCATTCACTTGGTTTGGATACGAGTAAATTCATCCCTGGCTCTCCCTCAGCCCACACTGCAGTGGAGTCAGCCCTGAAGGGCATGGCATTCTACAGCCAGCTCCAGGCAGAAGATGGCCACTGGGCAGGAGACTACGGAGGACCCCTCTTCCTGCTACCAGGTCTCCTGATCACCTGTCACATAACCCAGATCCCTCTCCCTGAGGCTTGGAAGAAGGAGATGGTGAGATACCTGCGCTCTGTCCAGCTGGCTGATGGAGGCTGGGGCCTACACATTGAAGACAAGTCCACAGTGTTTGGCACGGCCCTCAGCTACACCACCCTGAGGATTCTGGGAGTGGGACCGGATGACCCGGATATGGTTAGGGCCAGGAACAACCTGCACAGCAAAGGAGGCGCGGTTGGCATCCCCTCCTGGGGTAAATTCTGGTTGGCCATCCTCAATGTGTACAGCTGGGAAGGAATGAACACGCTCCTCCCGGAGATGTGGCTGTTCCCTACCTGGTTCCCTGCTCACCCATCCACTCTCTGGTGCCACTGTCGCCAGGTCTACCTCCCTATGAGCTACTGCTACGCTGTCAGGTTTGCTGCCAAGGAGGACCCCCTGGTGCTCAGCCTCAGACAGGAGCTGTATGTCCAGGACTATGCCACCATCAACTGGCCTGGTCAGCGGAACAATGTGGCAGCATGTGACATGTACACACCACACAGCACGCTACTCACCGTGGCTTACATGGTCATGAACGTGTATGAggcccaccacagcagcagtctacgaGGAAGAGCGGTCAAAGAGCTGTACGACCACATACAGGCTGACGACCGTTTCACCAAGTGCATCAGCATCGGCCCAATCTCCAAAACGATCAACATGTTGGTGCGCTGGCACGTGGACGGACCCTCTTCCGCTGCCTTCCAGGAGCACGTGTCCAGGATCCCAGACTACCTCTGGCTGGGATTGGATGGTATGAAAATGCAGGGAACCAATGGATCACAGCTATGGGACACGGCTTTCGCAGCTCAGGCGTTCCTAGAGGCAGGGGCTCAGGACAGCCCCAGGTTAGAAGAGTGTCTTAAACACGCCCACCAGTTCCTCACCATCACACAGATACCAGACAACCCCCCAGAATACCAGAAATACTACAGACAGATGAACAAGGGAGGGTTCCCCTTCAGCACGCGGGACTGTGGCTGGATCGTGGCCGACTGCACGGCAGAGGGCCTAAAGTCAGTGATGCTTCTGCAGGAACACTGTCCCTTCATCAGTCAGCACGTCCCCTCAGAGCGCCTGTGTGACTCCGTCAATGTGTTGCTAAGCATGAGAAACAGAGACGGCGGTTTTGCCACTTATGAGACCAAGCGAGGAGGGAGACTGTTGGAGCTACTCAACCCCTCAGAGGTGTTTGGTGACATCATGATAGACTACACCTATGTGGAGTGCACCTCAGCAGTCATGCAGGCTCTGAGACACTTCCAGCACGTGTACCCTGAATACCGGACAGAGGAGATcagGTCCACTCTGAGAGAAGGATTGGAGTACTGCCGGAGGGTGCAGAGGCCCGATGGGTCATGGGAAGGATCCTGGGGAGTGTGCTTCACCTATGGGGTCTGGTTCGGCTTGGAGGCCTTTGCCTGCATGGGTCACACCTACCATGATGGcGGTGGTGTGTGTAAGGAGGTGCAGAGTGCCTGTGACTTCCTGGTGGCCCACCAGATGGAGGATGGGGGCTGGGGTGAGGACTTTGAGTCCTGTGAGCAGCGTCGCTACGTGCAGAGTGCTAACTCCCAGATCCACAACACCTGCTGGGCCCTGCTGGGCCTCATGGCTGCTAGGTACCCAGATGCACAGGTGATTGAGAGAGGAATACAGCTGTTGGTTGACAAGCAGCTGCCCAATGGAGACTGGCCACAGGAAAACATCTCGGGAGTATTCAATAAGAGCTGTGCCATCAGCTACACTTCCTACAGGAACGTCTTCACCGTGTGGACGCTGGGACGCTTCTTTAACCTCTTCCCCTCCAGCCCTCTGGCCGGGAAGGTGAAGCtgtgaggtcagaggtcacctAAAGGTCAAGAGGTCAGCAACGATTGGAACAGTGCCCTTTCTAATCTATACATAAAGAACGGCCGtgaacagggttggggagtaatggattacatgtaatccgttaaatgTAACTGAttctaaaagtattttttttcCTGTAATCcgttaccagctaaaatattgtaatcagattacagatacttttgaaaaactagatgattacttcatTCTCAATAACATTCAAATCATCTTAAATGTGTTCTGCTTGAgagagtctgaccacaagtcagagaccattacacaccaaatgtgtttaatGATatgcgggaaaagagcaggaataggcttttgtaggctacagtccaagctatgtcttccagtGGTGCGACTGCTGTCAGCATCAAAGATTATTCATCCaatttgaataaacgcttggaggtaaggatgacagcagtgttgTAGCCTACGGGTGCtaggatatcacttattattgatatctatacagctcattgatgtgaatcacactgctgctcaaTCTAATTGGTGCTGATAAAAGAAAAATGCCCATAGGCCTaacggacacatgctcaaacacacacacttttaagggacttaaacagctgcaaatgattgagatatcaaagtgtcaccaacaaaagcttaaacaataggcctatagcaaatgcagcatatggaaatcatttttcacatgcaaatagcacttaGTCCTATTTTTGAAGACCAATGGGGTATGAAATCAATTGGAAGGATTGGAAATCTGACAACTTGTGGTTTCAATGTGAAGATGTAGCCTACTCATTTTATTATCTATATTAAAGTAGAAAGCTATCGGTTAAAAGAAGCCTACATAACTTTAAAGTAAAATGCAACATCCGTTTATTGCTAGAACTTTGTAAactctaacattgatttatcctgcaatagatgtcattcaattggtaatattcatttttgtcttcttctaatgcctcttattaaggggaaagtaatctaaaagtaacttaaGGTttatcagattacgttactgagtttgggtcaTCCAAAAGTTAGTGATTACAATTGTGGACAGGTAACTAGCAACTGTAACAGATTGCATTTCTAAAGTAACCTCCCCAACCCTGTTCGTAAAAGTGACGTTTTTCAATTTTTCTACTGGGTGAGTCCTGAAAATACCTCAACCTTGGGATCACCTTACCTTGCCTGCTATTTTAACATTCCTCTTGCCTTACATTTTGGTGGGACTGAACTCTTTGAAACATACCTTTTAAGTTGCTATGTGAGAAATGAGGGTGTCATTTTGGCATCTGTATAATGAAATAAAAATCGAGCCCGTAAATCAATCTGTAAATAGTGCTGAAATAAGTGTTTCCATGTTGCCTATTAATATCAACCTTAGTTTCTGAAAATCTATTGATGTAATTGATTTGTAATTAAATCTTATTTTGAAATGCAGAATAAAGTCATTTTGGATGGTTTCACTAA

Function

symbol description
lss Predicted to enable lanosterol synthase activity. Predicted to be involved in cholesterol biosynthetic process. Predicted to act upstream of or within triterpenoid biosynthetic process. Predicted to be active in lipid droplet. Is expressed in several structures, including heart; integument; liver; pleuroperitoneal region; and skeletal muscle. Human ortholog(s) of this gene implicated in alopecia-mental retardation syndrome 4; cataract; cataract 44; and hypotrichosis 14. Orthologous to human LSS (lanosterol synthase).

NR:

description
lanosterol synthase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016866 intramolecular transferase activity molecular_function

KEGG:

id description
K01852 LSS, ERG7; lanosterol synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958935.1 True 3865 mRNA 0.48 22 19530398 19544185

Neighbor

gene id symbol gene type direction distance location
LOC110501563 NA coding downstream 4899 19523061 ~ 19525499 (-)
mstnb LOC100135919 coding downstream 87692 19439196 ~ 19442706 (-)
ormdl1 ormdl1 coding downstream 184558 19338752 ~ 19345840 (-)
osgepl1 osgepl1 coding downstream 199752 19323005 ~ 19330646 (-)
zgc:136439 LOC106581848 coding downstream 216670 19311289 ~ 19313728 (-)
LOC110501564 mcm3ap coding upstream 173 19544358 ~ 19570630 (-)
LOC110501567 usp37 coding upstream 28260 19572445 ~ 19603558 (-)
znf142 znf142 coding upstream 111578 19655763 ~ 19666201 (-)
vil1 vil1 coding upstream 199535 19743720 ~ 19763860 (-)
LOC110501577 LOC106581859 coding upstream 225223 19769408 ~ 19787525 (-)
G1785861 NA non-coding downstream 39665 19490519 ~ 19490733 (-)
G1785857 NA non-coding downstream 44063 19486128 ~ 19486335 (-)
G1785752 ankar non-coding downstream 210559 19319492 ~ 19319839 (-)
G1785748 NA non-coding downstream 238810 19291367 ~ 19291588 (-)
G1785745 NA non-coding downstream 246019 19284031 ~ 19284379 (-)
G1786379 NA non-coding upstream 142305 19686490 ~ 19687169 (-)
G1786380 NA non-coding upstream 143580 19687765 ~ 19688406 (-)
G1786566 NA non-coding upstream 430135 19974320 ~ 19974561 (-)
G1786579 NA non-coding upstream 444683 19988868 ~ 19989288 (-)
G1786646 NA non-coding upstream 538201 20082386 ~ 20082662 (-)
G1785753 NA other downstream 208539 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 351214 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 1626447 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2466950 17057104 ~ 17063550 (-)
b3galt1b LOC106581793 other downstream 3705184 15684423 ~ 15825221 (-)
G1786832 LOC100136012 other upstream 801514 20345699 ~ 20346014 (-)
G1787166 NA other upstream 846331 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2246571 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2873945 22418130 ~ 22419498 (-)

Expression


Co-expression Network