ybey (ybey)


Basic Information

Item Value
gene id ybey
gene name ybey
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19570580 ~ 19572946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579228.2
CCGCAAGAGAAGAATGCTAGCTGAAATGTTCATCGTTTGTTTGTTTGAAGCAATAGGATATTTTgtcatataataatatattagaTTTGTATCATTATATCAGCTCTAGAAGACCTTGTTGTAGAATAGTACATATTTGTATTCATAATCTAAAATAAGAATGCCTTCAACAACTGGAACGACTGAGTCACCTTGATTGAACCAACGAGCATTCGCCGGCTAACAACACGCTAGTTACCTAGGATACCTGTTTCTTGTATGTAGACATTCGTAATATTTACGACTACTTGATAAAAACTATTTCCTTCAGAGTTTTTGTAACATTAGTGACTGGCGTTTTCAAATGGGTGTAGTTCTACGGAATCTTCAGAACGTGGTGCCGTTGCGACGCGCGAGGCTACGGAAGGACGTGGAGACGTTGAGGCACATATTGGGCATCCAAAAATTTGATTTGGGAGTCATTTGCGTGGACAACCGCAAAATTCAACGCATCAATAACATTTATAGGAAAAAAAATATGCCCACTGATGTCCTCTCATTTCCATTCTATGAGgaGCTGAGGCCTGGGAAGCTGCCTTGCCCCATTTACAGAGATGAACTGAACCTTGGAGACATTTTCTTGGGGGTTGAATACCTGATGAAACAGTGCCAGCAGCAGTCTCAGGATCTTCATGGAATTCTCACATCAGTCACTGCTCATGGAATCTGTCATTTGTTGGGTTACAGACATGAAACTGAGGAGGAGTGGAAAGAGATGCTGCAGAAGGAGagctacatacttaatgagttcAACAGATTCACTGGCAGACAGCTGGTGCCTCTGACCAAGAAATGTAGCCAAGACGGGTGACCACCAAGAAGAACCACCTGCAATGGAAGGCCTTTGAAACGAATGGACTTATTAGCTTTGGATGGATTTGGAAACTTGCAAAGACAACTCCTTGATCATGAATAAACTGCCCATTTCCAAGTGATAGCTACAGACCGCGTCAGCCTTCATGTGATTGCTGAGCTTTTACCTATGGAGCTAGACAGACTACTCTTTTTTTACAATCAAACTGCTCTACCCATGACTTGACATTGATGACAATTAAAAACATCCAAAACCATTGTttaaattcatttttattttaaaatgtgatgTAGGAAGTCAAATACTGGAGCCTGAACTACAACAAAAAAAACTCCACTCTGCTACTCCTTTGCCTTCCACATCAGACACGCTTGTCAACCTAAAACATGTTCATTTTCACTTAATGCAAGCAGGAGACCAGTAAATAGCTAGCCAAACCCTAATCTTAGCAAAAAGTAGTCTAAAAGATGTGAGTACTGGCCTGGTCAGGTGTGATGAGACATCCGAGCTGGCCATTATTAACAGACCTCTCTAAAATAAATAGTTACATCTTATGGCCTTATTAAAAGCAAAGCCTATGCAGGATAGCTTACGCATGTAATACATGTTTCTGCATTGTCAGCGGTTTGAAGGAACACATTCTAAACAAAGTGGTTGTGCATTTCTCAAAGTAAAGCGCTTTAGAAAAAGAAACTACCGGTTCTGTACTGGGAGGCACTAGGGAACCCCTAGGAGCGTAAgcttctaaaaataaaaaaaaa
>XM_021579229.2
TATTTTgtcatataataatatattagaTTTGTATCATTATATCAGCTCTAGAAGACCTTGTTGTAGAATAGTACATATTTGTATTCATAATCTAAAATAAGAATGCCTTCAACAACTGGAACGACTGAGTCACCTTGATTGAACCAACGAGCATTCGCCGGCTAACAACACGCTAGTTACCTAGGATACCTGTTTCTTGTATGTAGACATTCGTAATATTTACGACTACTTGATAAAAACTATTTCCTTCAGAGTTTTTGTAACATTAGTGACTGGCGTTTTCAAATGGGTGTAGTTCTACGGAATCTTCAGAACGTGGTGCCGTTGCGACGCGCGAGGCTACGGAAGGACGTGGAGACGTTGAGGCACATATTGGGCATCCAAAAATTTGATTTGGGAGTCATTTGCGTGGACAACCGCAAAATTCAACGCATCAATAACATTTATAGGAAAAAAAATATGCCCACTGATGTCCTCTCATTTCCATTCTATGAGgaGCTGAGGCCTGGGAAGCTGCCTTGCCCCATTTACAGAGATGAACTGAACCTTGGAGACATTTTCTTGGGGGTTGAATACCTGATGAAACAGTGCCAGCAGCAGTCTCAGGATCTTCATGGAATTCTCACATTGTATATCTGTGCTCCCAGATGCTGCAGAAGGAGagctacatacttaatgagttcAACAGATTCACTGGCAGACAGCTGGTGCCTCTGACCAAGAAATGTAGCCAAGACGGGTGACCACCAAGAAGAACCACCTGCAATGGAAGGCCTTTGAAACGAATGGACTTATTAGCTTTGGATGGATTTGGAAACTTGCAAAGACAACTCCTTGATCATGAATAAACTGCCCATTTCCAAGTGATAGCTACAGACCGCGTCAGCCTTCATGTGATTGCTGAGCTTTTACCTATGGAGCTAGACAGACTACTCTTTTTTTACAATCAAACTGCTCTACCCATGACTTGACATTGATGACAATTAAAAACATCCAAAACCATTGTttaaattcatttttattttaaaatgtgatgTAGGAAGTCAAATACTGGAGCCTGAACTACAACAAAAAAAACTCCACTCTGCTACTCCTTTGCCTTCCACATCAGACACGCTTGTCAACCTAAAACATGTTCATTTTCACTTAATGCAAGCAGGAGACCAGTAAATAGCTAGCCAAACCCTAATCTTAGCAAAAAGTAGTCTAAAAGATGTGAGTACTGGCCTGGTCAGGTGTGATGAGACATCCGAGCTGGCCATTATTAACAGACCTCTCTAAAATAAATAGTTACATCTTATGGCCTTATTAAAAGCAAAGCCTATGCAGGATAGCTTACGCATGTAATACATGTTTCTGCATTGTCAGCGGTTTGAAGGAACACATTCTAAACAAAGTGGTTGTGCATTTCTCAAAGTAAAGCGCTTTAGAAAAAGAAACTACCGGTTCTGTACTGGGAGGCACTAGGGAACCCCTAGGAGCGTAAgcttcta
>TU2044113
TCTACATTCCACCCCGGGAAGGATCCGCAAGAGAAGAATGCTAGCTGAAATGTTCATCGTTTGTTTGTTTGAAGCAATAGGATATTTTgtcatataataatatattagaTTTGTATCATTATATCAGCTCTAGAAGACCTTGTTGTAGAATAGTACATATTTGTATTCATAATCTAAAATAAGAATGCCTTCAACAACTGGAACGACTGAGTCACCTTGATTGAACCAACGAGCATTCGCCGGCTAACAACACGCTAGTTACCTAGGATACCTGTTTCTTGTATGTAGACATTCGTAATATTTACGACTACTTGATAAAAACTATTTCCTTCAGAGTTTTTGTAACATTAGTGACTGGCGTTTTCAAATGGGTGTAGTTCTACGGAATCTTCAGAACGTGGTGCCGTTGCGACGCGCGAGGCTACGGAAGGACGTGGAGACGTTGAGGCACATATTGGGCATCCAAAAATTTGATTTGGGAGTCATTTGCGTGGACAACCGCAAAATTCAACGCATCAATAACATTTATAGGAAAAAAAATATGCCCACTGATGTCCTCTCATTTCCATTCTATGAGGTTGGTATCTAAGTTGCCTTCCCAGCATTCATCTGCCCCTGTCAAGAGGTCTGGGATTTCATGGCACGGGTGTTAATGCACCACAGGTTCAAGATGCAGTGGTGGGATGGTCTCTGGCCTCTGGAAGTGTTACCCTGTTCGCTATGTGAACATTTGGAAATTGAATTTAGGTAAAGAAACGGTGatcaatgtttgttttgtttttaaaggaGCTGAGGCCTGGGAAGCTGCCTTGCCCCATTTACAGAGATGAACTGAACCTTGGAGACATTTTCTTGGGGGTTGAATACCTGATGAAACAGTGCCAGCAGCAGTCTCAGGATCTTCATGGAATTCTCACATCAGTCACTGCTCATGGAATCTGTCATTTGTTGGGTTACAGACATGAAACTGAGGAGGAGTGGAAAGAGATGCTGCAGAAGGAGagctacatacttaatgagttcAACAGATTCACTGGCAGACAGCTGGTGCCTCTGACCAAGAAATGTAGCCAAGACGGGTGACCACCAAGAAGAACCACCTGCAATGGAAGGCCTTTGAAACGAATGGACTTATTAGCTTTGGATGGATTTGGAAACTTGCAAAGACAACTCCTTGATCATGAATAAACTGCCCATTTCCAAGTGATAGCTACAGACCGCGTCAGCCTTCATGTGATTGCTGAGCTTTTACCTATGGAGCTAGACAGACTACTCTTTTTTTACAATCAAACTGCTCTACCCATGACTTGACATTGATGACAATTAAAAACATCCAAAAC
>TU2044114
TCTACATTCCACCCCGGGAAGGATCCGCAAGAGAAGAATGCTAGCTGAAATGTTCATCGTTTGTTTGTTTGAAGCAATAGGATATTTTgtcatataataatatattagaTTTGTATCATTATATCAGCTCTAGAAGACCTTGTTGTAGAATAGTACATATTTGTATTCATAATCTAAAATAAGAATGCCTTCAACAACTGGAACGACTGAGTCACCTTGATTGAACCAACGAGCATTCGCCGGCTAACAACACGCTAGTTACCTAGGATACCTGTTTCTTGTATGTAGACATTCGTAATATTTACGACTACTTGATAAAAACTATTTCCTTCAGAGTTTTTGTAACATTAGTGACTGGCGTTTTCAAATGGGTGTAGTTCTACGGAATCTTCAGAACGTGGTGCCGTTGCGACGCGCGAGGCTACGGAAGGACGTGGAGACGTTGAGGCACATATTGGGCATCCAAAAATTTGATTTGGGAGTCATTTGCGTGGACAACCGCAAAATTCAACGCATCAATAACATTTATAGGAAAAAAAATATGCCCACTGATGTCCTCTCATTTCCATTCTATGAGGTTGGTATCTAAGTTGCCTTCCCAGCATTCATCTGCCCCTGTCAAGAGGTCTGGGATTTCATGGCACGGGTGTTAATGCACCACAGGTTCAAGATGCAGTGGTGGGATGGTCTCTGGCCTCTGGAAGTGTTACCCTGTTCGCTATGTGAACATTTGGAAATTGAATTTAGGTAAAGAAACGGTGatcaatgtttgttttgtttttaaaggaGCTGAGGCCTGGGAAGCTGCCTTGCCCCATTTACAGAGATGAACTGAACCTTGGAGACATTTTCTTGGGGGTTGAATACCTGATGAAACAGTGCCAGCAGCAGTCTCAGGATCTTCATGGAATTCTCACAGTGAGCAAGCTACTAGTAAAACAGCCACACAATGCATGcacaacatttattttatttaactaggcaagtcagttaagaacaaatatttatttacaatgacaacctacaaCACAGTAATATCATGCAACAGACATTAAGTCACATTTTCAATTGAAGCCAGGGACTTTTTGGTGGGAGCTTAAGAGTGAGGTGGGGTGGTCCACCTTGCCTTTTAGAATGGTGAAATACTGCGTGATAAACGGTTTGTCCTGTGACTATCGTGTGATAACCATTCACATGCAAAAGTATAACGTTTCTAGTGAAATTACTTGCCAGCACACTAAATATGGTTATGGGTCCCAAGATTGACAGACAATTGTTTTTATTACACTAAACACTAGTAGTTGCATTAGTGCTTGTTCATTTGACTTTTTTTTGTCCCCCTTCTCCTTGCTCAGTCAGTCACTGCTCATGGAATCTGTCATTTGTTGGGTTACAGACATGAAACTGAGGAGGAGTGGAAAGAGATGCTGCAGAAGGAGagctacatacttaatgagttcAACAGATTCACTGGCAGACAGCTGGTGCCTCTGACCAAGAAATGTAGCCAAGACGGGTGACCACCAAGAAGAACCACCTGCAATGGAAGGCCTTTGAAACGAATGGACTTATTAGCTTTGGATGGATTTGGAAACTTGCAAAGACAACTCCTTGATCATGAATAAACTGCCCATTTCCAAGTGATAGCTACAGACCGCGTCAGCCTTCATGTGATTGCTGAGCTTTTACCTATGGAGCTAGACAGACTACTCTTTTTTTACAATCAAACTGCTCTACCCATGACTTGACATTGATGACAATTAAAAACATCCAAAAC

Function

symbol description
ybey Predicted to enable endonuclease activity; metal ion binding activity; and metalloendopeptidase activity. Predicted to act upstream of or within rRNA processing. Orthologous to human YBEY (ybeY metalloendoribonuclease).

NR:

description
putative ribonuclease isoform X2

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579228.2 False 1614 mRNA 0.40 4 19570604 19572946
XM_021579229.2 False 1493 mRNA 0.41 3 19570662 19572932
TU2044113 False 1340 TUCP 0.42 3 19570580 19572439
TU2044114 True 1777 lncRNA 0.41 2 19570580 19572439

Neighbor

gene id symbol gene type direction distance location
LOC118943580 cssa21h2orf88 coding upstream 119482 19444418 ~ 19451122 (+)
pms1 pms1 coding upstream 155907 19350624 ~ 19414697 (+)
adat3 NA coding upstream 232137 19337616 ~ 19338467 (+)
ankar ankar coding upstream 245954 19313814 ~ 19324650 (+)
asnsd1 asnsd1 coding upstream 259103 19307922 ~ 19311501 (+)
LOC110501568 cnot9 coding downstream 30796 19603742 ~ 19627954 (+)
plcd4b plcd4 coding downstream 57214 19630160 ~ 19655758 (+)
LOC110501572 LOC106581856 coding downstream 106357 19679303 ~ 19686002 (+)
LOC110501573 LOC106586130 coding downstream 116070 19689016 ~ 19726868 (+)
zgc:66484 LOC106581857 coding downstream 161341 19734287 ~ 19743949 (+)
G1785544 NA non-coding upstream 68077 19502324 ~ 19502527 (+)
G1785543 NA non-coding upstream 68302 19502032 ~ 19502302 (+)
G1785535 NA non-coding upstream 74380 19495989 ~ 19496224 (+)
G1785528 NA non-coding upstream 84450 19485864 ~ 19486154 (+)
G1785527 NA non-coding upstream 87252 19483130 ~ 19483352 (+)
G1785945 znf142 non-coding downstream 89259 19662205 ~ 19663022 (+)
G1785951 NA non-coding downstream 92054 19665000 ~ 19665218 (+)
G1785952 NA non-coding downstream 92502 19665448 ~ 19665660 (+)
G1785953 NA non-coding downstream 92964 19665910 ~ 19666169 (+)
G1785961 NA non-coding downstream 100654 19673600 ~ 19673834 (+)
LOC110501548 LOC106586143 other upstream 372890 19186076 ~ 19197714 (+)
G1784476 asic4 other upstream 803464 18766319 ~ 18767140 (+)
kalrna LOC106581831 other upstream 1347878 18101519 ~ 18386130 (+)
G1783691 LOC106586162 other upstream 1659378 17909900 ~ 17911226 (+)
G1783622 NA other upstream 1828169 17741757 ~ 17742435 (+)
G1785947 znf142 other downstream 88163 19661109 ~ 19661926 (+)
asb1 asb1 other downstream 708067 20269646 ~ 20281952 (+)
G1786330 NA other downstream 710235 20283181 ~ 20284571 (+)
G1787719 NA other downstream 1561319 21134265 ~ 21136477 (+)

Expression


Co-expression Network