LOC110501567 (usp37)


Basic Information

Item Value
gene id LOC110501567
gene name usp37
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19572445 ~ 19603558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958934.1
TGTGTTCTCGTATACCATTTCCTCTAGATTTTCACATTCCCGCCATCATCGAGTACTGGAGGAAAACGTCGTGCGGACCACACTGTCAACAACATAATACTGGGGCCAACGAATGCCGGCTAAACCAACTTACTACTCCCCGAggatttaaaacaaaaatattataATTTACAAGTTTCGTTGAAGGGATATTTCATTCAAAGGTTTATTTGGAGAGCACAACCCTGACAATCACTAATGGCAGCAGCAGTGCCCAAGCTCTCCAGCGGAAGCGTTGTCAAAATACGCTACAACAGCATAGACGTGGGCACCACTCGATGGAAGGAGGGGACCTTCGAGGTTCTTGagaaggataacaaagtcaaccTGTGCCTGAAGTTCAATGCCGGTGGTGCACTCAAAAGTTTCCAGCTCAACCATAATGTGAAGAATGTCATGATGCAGTCCATGCACACTATGCGACGAATTGTGGTGTCTCTTAAGGATGGCAGTGTAGTCACCCTTGAGAGAATTCCCACTGCTGTGGCTGAGAAAATGAAAGAATATCTTGAGAAGTTGAAGCAGGGAAAACCAACAGTTCTAAAGACATCCCAGGGAAGTGCAAGCTTCAGTGTGCTCGGGAATCGATCCGTAAAGAAAGAGATTAGCCCACCTGGAGAACGACAGACAACACCCAGGCGACCCAGTGTGGACAACAGGGAGGAGATGATGCCCCGCAAACCTCTGAGCAGTCCCAGCAGAGTCACCTCCACACCTTCCCGCAGTGGGCTGTCTGAGAACAGGAttgagaagaggaagagacaccTCACCTCTGACAGCGACCTGACTAAGGACTACCCCAAGGAGAATGACTCATCCAGCAACAACAAGACCATGTCGGACCCCTCCAGGAAGTTTCTGCTGAGCTGCAAAGACAAGCTGAAACAGGCAGAGGAGAACCGCTGCTCTGTTTTACTGGTTCCAGCGCCACTTCAGCCCACGTCATTCTACGGCAGCCGATCGGTGACCAAAGACTACTCCACGAGTCACTCTTTCCTCGACAGGCCATCCAGTACATCCCAGACCACCTCGGCTAAAAGAAGTCTTGTGTTACCCAATCACTCGACCCCCTTCAAGAAAGTGCGCCCCATGCTGGACTACGGTGGCTGGAACAAGCCGAGACCATCCACTctggcccagccccagcctccactGCAAGGATTCTCCAACCTGGGCAACACGTGTTACATGAACGCCATCCTGCAGTCTCTCTTCAGCCTGCCGTCGTTCTCCAATGACCTGCTGAAGCAGGGAATCCCATGGAAGAAGATCCCCGCCAACGCCCTACTCAGACGCTTTGCCCACTTGCTGGCCAAGAAGGACATCTCGTGCCCTGAGGTAAAGAAAGACCTGCTGAGGAGAGTGAAGAGTTCCATCTCCTCCACAGCTGAGCGTTTCTCTGGATACATGCAGAACgaCGCCCATGAGTTCCTGAGCCAGTGTCTGGACCAGCTTAAGGAGGACATGGAGAAGGTGAACAAGAGCTGGAAGAGCGAATCGGCGGCGTGGGACGAGGCCCCCCAGCAGGCGGCCGCGGTCAGGCCTGGGGAGGAGGCGGACACCTCACACACGTACACCTGCCCCGTGGTGGTCAACATGGAATTTGAGGTGCAGCACACCATCACCTGCAAAGGCTGTGGAGAAGTGGTGACCAAACGGGAGCAGTTCAACGACCTGTCCATTGACCTGCCTCGCAGGAAGAAGACCATCCCTCTCCGGTCCATCCAGGACTCTCTGGACCTCTTCTTCAGGATGGAGGAAATCGAGTATTCTTGTGAAAAGTGCAGCAGGAAAGCGGCGACAGTGACACATAAATTCAGCCGACTCCCCAGAGTTCTTATCTTGCACCTGAAGCGCTACAGCTTCAACGCCCAGCTGTCCCTAAACAGTAAGCTGGGCCAGCAGGTGATGATTCCCCGCTATCTCACACTGCTGTCCCACTGCACAGACACTACGCAGCCCCCCCTCAGCCTGGGCTGGAGCGCACATGGAACCATGGCACGAACACTGAAGGCCTCCCAGTTGGTGAACTCCTCCTCACTACTTTGGAAAGTGTCTCTGAAGGCAGGGGGCAGCTCCAGCAGTATCCTGGTGGACTCTGACAGCGAGGAGGAGCTGAGCCGGAAGGCGGTGAGCCGCAAGCGACGCCTCAGCGACTGTCTGCCTGACGACAAAGCAGAGGAGCGAGGCGTCCAACACACAGACGCGTCAGACATCAACGATGAGGCGATGCTGGCGGTAGTGCTAGAGATGAGTTGTCAAGACACTGGTCTCTCCTGCCCTGCCCCTGAGGACGAGCCAACCAGCAGCCCCGACACGGGCTTCGGGGACGCCGACCCTGACACCCAGGAGCCAAACTACCACCCAGACCTGCTGGAGACGGACAGCAAACCGTCTGCAGatgcgCTGGACTCCCTGGACCTGACCATGGACGAAAACAAGGAAAACCAGACACCTGAGGGGGTGCAGGGGGAGCTGGACTGGGTGCAGCAGTTTAGCCTGGAGCAGGAGCGGGAAGAGCAGGAGCTGCAGCAAGCCCTGGCCCAGAGCCTGCAAGAGCATGAAGCCCaagagatgagggaggacgacGACCTCAAGAGAGCCACAGAGCTCAGCCTGCAAGAGTTCAACAACTCGTTGCCGGAGCTGCTGTGTTCAGACGAGGATTCTGGGAACGAAGAGGTGCTGGACATGGAGTACAGTGAAGCAGAGGCTGGGGACCTGAAGAGGAACGCTGAGAGTGGAGATCTGACCAATTCCTTCCGGCTGATCAGTGTAGTCAGTCACATCGGGAGCAGCTCCTCCTCTGGCCATTACATCAGCGACATCTACGACATGAAGAAGCAGTCGTGGCTGACCTACAACGACCTGGACGTGTCGCGCACACAGGAGGCCATGGTGCAGAGAGACCGCGACCGCAGCGGATACATCTTCTTCTACATGCACAAggaTGTTTTTGAGGAGCTTTCTGAGCTGGAGAGAACCGGGGCCAGTGGAGGAGCCTCAGAGGCAGGGAGGACCGTCCTGCAGCCCCTCTGAGCCACCAGTCTATCATCAATTAATCACACCAACCAACACACTCCAACTGCACAGAGCTGTTCCCCATCAGTTGTGTTGGGTTAAAGAGAACCCTTCTCCAGTACTACTGATTGCTGTCCACATTTTGCCCTCTTCAGGCACTTTGTCCcttttttaaaaacaaaacacaacagaCCAAGGTAGCTTCTGTCAGGCGCAAGACATCAGCACACATACAGCCCACATTCTTCTCTCCAGGTCTACTCAGAAATGAGACATGCAGTACACTCAAAATATAGGAGTTGACTATGCTCTTTGTTTATTCAAGCCTGAGAGAGATTAGCCCCCAAACTTTGTTTCTTTTCTATGATTTGTTGAATAACTTGTAAAATAGTTTCTTGGCACTCGTATGATATTAACTATCATGCATTTAAGAACTTTGATAGAAAGTGTCAGATGGATTGTATGGTTGACTCAATTTCTAATAATCTATCGAAAACCAAGATTTATTCTTCTGTGCTGGAATTAAAGCTAATTTAAGGTTAGTACTTTCTTCTATATGCATCGGATACATGTGGTGCAATATTTATTTTGTGGCATAGATTTGCCAATACTGCTTATgtttgtattctgttctagagttgaggatgtttttttttcaatttcttgCAATGATTTACATATGGACTGTTTGTTGCCGTTTTATTCATGTTTTATCACCTTGACAAACTAAACATTAATAAAGTAGCttgctttttttttatttttagaagcTTACGCTCCTAGGGGTTCCCTAGTGCCTCCCAGTACAGAACCGGTAGTTTCTTTTTCTAAAGCGCTTTACTTTGAGAAATGCACAACCACTTTGTTTAGAATGTGTTCCTTCAAACCGCTGACAATGCAGAAACATGTATTACATGCGTAAGCTATCCTGCATAGGCTTTGCTTTTAATAAGGCCATAAGATGTAACTATTTATTTTAGAGAGGTCTGTTAATAATGGCCAGCTCGGATGTCTCATCACACCTGACCAGGCCAGTACTCACATCTTTTAGACTACTTTTTGCTAAGATTAGGGTTTGGCTAGCTATTTACTGGTCTCCTGCTTGCATTAAGTGAAAATGAACATGTTTTAGGTTGACAAGCGTGTCTGATGTGGAAGGCAAAGGAGTAGCAGAGTGGAGTTTTTTTTGTTGTAGTTCAGGCTCCAGTATTTGACTTCCTAcatcacattttaaaataaaaatgaatttaaA

Function

symbol description
usp37 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP37 (ubiquitin specific peptidase 37).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11850 USP26_29_37; ubiquitin carboxyl-terminal hydrolase 26/29/37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958934.1 True 4312 mRNA 0.50 24 19572445 19603558

Neighbor

gene id symbol gene type direction distance location
LOC110501564 mcm3ap coding downstream 1815 19544358 ~ 19570630 (-)
lss lss coding downstream 28260 19530398 ~ 19544185 (-)
LOC110501563 NA coding downstream 46946 19523061 ~ 19525499 (-)
mstnb LOC100135919 coding downstream 129739 19439196 ~ 19442706 (-)
ormdl1 ormdl1 coding downstream 226605 19338752 ~ 19345840 (-)
znf142 znf142 coding upstream 52205 19655763 ~ 19666201 (-)
vil1 vil1 coding upstream 140162 19743720 ~ 19763860 (-)
LOC110501577 LOC106581859 coding upstream 165850 19769408 ~ 19787525 (-)
LOC118943631 NA coding upstream 185236 19788794 ~ 19789923 (-)
agr1 LOC106581734 coding upstream 592154 20195712 ~ 20203864 (-)
G1785861 NA non-coding downstream 81712 19490519 ~ 19490733 (-)
G1785857 NA non-coding downstream 86110 19486128 ~ 19486335 (-)
G1785752 ankar non-coding downstream 252606 19319492 ~ 19319839 (-)
G1785748 NA non-coding downstream 280857 19291367 ~ 19291588 (-)
G1785745 NA non-coding downstream 288066 19284031 ~ 19284379 (-)
G1786379 NA non-coding upstream 82932 19686490 ~ 19687169 (-)
G1786380 NA non-coding upstream 84207 19687765 ~ 19688406 (-)
G1786566 NA non-coding upstream 370762 19974320 ~ 19974561 (-)
G1786579 NA non-coding upstream 385310 19988868 ~ 19989288 (-)
G1786646 NA non-coding upstream 478828 20082386 ~ 20082662 (-)
G1785753 NA other downstream 250586 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 393261 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 1668494 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2508997 17057104 ~ 17063550 (-)
b3galt1b LOC106581793 other downstream 3747231 15684423 ~ 15825221 (-)
G1786832 LOC100136012 other upstream 742141 20345699 ~ 20346014 (-)
G1787166 NA other upstream 786958 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2187198 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2814572 22418130 ~ 22419498 (-)

Expression


Co-expression Network