plcd4b (plcd4)


Basic Information

Item Value
gene id plcd4b
gene name plcd4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19630160 ~ 19655758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958938.1
GTACCAGCATGCGGCAGTGTTGTCTGGGGATCAGTTTTCCCAGACAACGCAGGCAGAGTGGAGCCTGGTAGACAGAGAGGCTGACACTGAGCCAGCTTTCCTCTGGACACTCCCCATCTCCCTGTGCTGGGCTAGTGGTCTCAGGACACTCCCTGAGTGTCTTAAGTTCTGGAGCTTTCTACTGGGCTTGCTACCTCCAACAGACCCCCATCTCTGGGGGCCAGCTATCTTTTGGGCACTCCCTAATTCTGGTCTGGAGCCCTTTCCTGGACTGGCTCTCACCAAACATCAATCTATTCTGGAGCTCGTCACAGCAGTGGCAGCCCAAGCTGAGTCGGGGCAAAGACCAAGCTGAGTCGGGGCAAAGACCAAGCTGAGTCGGGGCAAAGACCCAAGTGAGCAGTCTACAATTTGGATATCACCAAGTGCATGTGTCAAGGCTGTTGATGGATTCTCCCCAAAGCTTGTTTGCCAAGGGTGACAAGGACCTCCAGGTGATGAAGGCGGGGGCCATGTTGAAGAAGGTCAAGTCCAAATCATGGAAGAAGCAGCGGCATTTCCGGCTACAGGAAGATGGCCAGACCATCTGGTATAAGTCCAGGTGGGCAGGAACAAGCCACTCCACCTTCTCTGTGGCTGATGTTGAGGTGGTGCGTGAAGGTCACCAGTCGGAGGTCTTGCTGAGCGTCGCTGAAGAGTTCCCCGCTGACCTCTGTTTCACCCTGGTGTTCCGTGGTCGCCGCGGCAACCTGGACCTGGTGGCGGAGTCACCTTCTGAGGCGCAGGCCTGGATCCGGGGTGTAAGCAAGCTGATACAGAATGCTGAGAGCATGGATGACAAGGAGAGGGTTGACCAATGGATCTGGGACTGGTTTCAGAAGGCGGACAAAAACAAGGACGGACGGATGAACTTCAAGGAGGTGCGCACACTGCTGAAGATGATGAACGTGGACATGAATGAGGAGTATGCTCTTCACCTCTTCACGTTGGCAGATAAGTCTAAGTCAGGTTGTCTGGAGAACGAggagtttgtccagttctataaGATACTGACGGAAAGGAAGGACATGTGGCGGGTGTTCCAGGACTACTCCCGAGACGGACAGACATTAACCCTTGCTGAGCTGAAGGACTTTCTGAGGCAGGAGcaacaggagggggagaggagttgGGAGCATGCCCAGGAGCTGATTGACCGCTATGAGCCGTCAGAGACCGCCAAGAAACAGGGGGCCATGTCTATAGATGGCTTCCAGATGTACCTGGTCTCTCCAGAGGGCGCCATCATGGATCCCCAGCAGCTGACCCTGAGCCAGGACATGAGCCGGCCCCTCAGCCACTACTTCATCTGTTCCTCCCACAACACCTACTTGATGGAGGACCAGCTCCGAGGACAGAGCAGCCAGGAGGCCTACATCCAGGCTCTAAAGCGGGGCTGTCGTTGTGTTGAGGTGGATTGTTGGGACGGGCCGAATGGAGAGCCGGTTGTTTATCACGGCCACACCTTCACCTCCAAGATCCTCTTCAGAGATGTCATCACCACACTGGGAGAGTACGCCTTCAAGGCATCTGAGTTTCCTGTCATCCTGTCCCTGGAGAACCACTGCAGTGTGGAGCAGCAAAGGGTCATGGCCCAGCTCCTGGACACCATCCTGGGGGACATGCTGCTCAGGGAACCTCTGGATGGACTGGTTCACCAAGAGCTGCCCTCTCCCCACGATCTGAAGGGAAAGATCCTGCTGAAAGCAAAGAAGATTGGCGGCCTAGAAGAAAATGAAACGCTGACCGATGAGGCCACTGACGAGATCAGCGATGAAGCTGAACCTGAGAGCCCGTCTGCAGAAAACCTGTCTGCAGAGGCCATTTGTCTCCATGATAAGAAATCCAAGTTCTCTAGGGAACTCTCGGATCTGGTGGTGTACTGCAAGAGTGTCCATTTTCACAGCTTTGAGTACTCTCGCTTACACTCCAAGTGCTACGAAATGTCCTCTTTCTCCGAGTCCAAGGCCAGGAAACTTGCAAAGGACACAGGGACGGAGTTTGTGCACCACAACAGCAGACAGCTTAGCAGAGTCTATCCCAGCGGCATGAGGACCGATTCCTCTAACTACAACCCACAGGAGCTGTGGAACGTGGGCTGTCAGATAGTGGCGCTGAACGTCCAGACGGCTGGGCTGGAGATGGATCTGAACGATGGGCTCTTCCGTCAGAATGGCTGCTGTGGCTACGTCCTCAAACCTGACTTCATGAGGAATGATGACTCTTTTGACCCAGAAAGACCCCAGGACTGGGATGGCTACACATCACTCCAACTGTCTATCCAGgtAATTAGTGGGCAGCAGCTACCAAAGGTGAACCAGAAAGAGGGCTCCATCGTTGACCCTCTGGTTAGAGTGGAGATCTACGGAGTATCACAAGACCAAGCCAAGCAAGAGACTAGTTACATTGACAACAATGGTTTTAACCCTCTATGGAACGAGACCCTCAATTTTATCATCCACGTCCCAGAGTTGGCCCTGGTGCGTTTTGTGGTGGAGGACTATGACAAGGCTTCCAGGAATGACTTCATGGGCCAGTTCACCGTGCCCTTCACCTGTATTCAGCCAGGATATCGGCATATCCACCTCCTGTCCAAAGACGGAACGGCTATCCCTCTGTCTACTCTGTTTGTCAATGTCAAGATCTCTGAGGTAACAACAGAAGTCTGATGGCCCAATGATTGGCTGAATAACATGCTGCAAACTCCAACTACATGGGAGGGCTACAATACCTCATGATTGCGGTCACTTTCAAATGAACTGGTATCAGTATTGAAAATATATGAACTGCTTTACAGTATTTCTGCATAAATACCCATTTCTGTTCAAGCAAACATTAGTGGGACCTCACACTGATGAAAAAACACCTGGGAACTCACAGCAATTAAGTGATATTTTGCCATTTCCCAAATATAAAATCTTTTAAAATAATCAATGTTTTTTAACGTGTATGTCATAGGAACGCATTAAGCAATGTTCAATAGCACTTGGCTGATCGAACTGATACAATAACTGACATACTGCAGGGCTCACAAGTCCTTTTAGGGTTACTGACTATGCAATGACCTTTGTTTTTATATCATTGTTTCATAACCATTCAACACTTGCATTGTGTGCTGGTCGAGTAACTTAACTGCCTAGACAATTAGTCCTCCATCCAAGCATTTCCATAGACATTTTGTACAATTCCTCAAAGTGTGGCATGAAACTATATCGCTATCTCATGCATCGTGTTGTAAAagattatactgtaatgtatgcATGCGCATAGAGCTCTAGAAATAAAGAGAAATGAAAGAC

Function

symbol description
plcd4 Enables G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Involved in small GTPase mediated signal transduction. Located in cytosol; endoplasmic reticulum; and plasma membrane.

NR:

description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007340 acrosome reaction biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958938.1 True 3338 mRNA 0.51 16 19630160 19655758

Neighbor

gene id symbol gene type direction distance location
LOC110501568 cnot9 coding upstream 2206 19603742 ~ 19627954 (+)
ybey ybey coding upstream 57214 19570580 ~ 19572946 (+)
LOC118943580 cssa21h2orf88 coding upstream 179038 19444418 ~ 19451122 (+)
pms1 pms1 coding upstream 215463 19350624 ~ 19414697 (+)
adat3 NA coding upstream 291693 19337616 ~ 19338467 (+)
LOC110501572 LOC106581856 coding downstream 23545 19679303 ~ 19686002 (+)
LOC110501573 LOC106586130 coding downstream 33258 19689016 ~ 19726868 (+)
zgc:66484 LOC106581857 coding downstream 78529 19734287 ~ 19743949 (+)
LOC110502116 NA coding downstream 216389 19872147 ~ 19872697 (+)
adarb1b LOC106581860 coding downstream 342081 19997839 ~ 20175660 (+)
G1785578 NA non-coding upstream 56395 19538704 ~ 19573765 (+)
G1785544 NA non-coding upstream 127633 19502324 ~ 19502527 (+)
G1785543 NA non-coding upstream 127858 19502032 ~ 19502302 (+)
G1785535 NA non-coding upstream 133936 19495989 ~ 19496224 (+)
G1785945 znf142 non-coding downstream 6447 19662205 ~ 19663022 (+)
G1785951 NA non-coding downstream 9242 19665000 ~ 19665218 (+)
G1785952 NA non-coding downstream 9690 19665448 ~ 19665660 (+)
G1785953 NA non-coding downstream 10152 19665910 ~ 19666169 (+)
G1785961 NA non-coding downstream 17842 19673600 ~ 19673834 (+)
LOC110501548 LOC106586143 other upstream 432446 19186076 ~ 19197714 (+)
G1784476 asic4 other upstream 863020 18766319 ~ 18767140 (+)
kalrna LOC106581831 other upstream 1407434 18101519 ~ 18386130 (+)
G1785947 znf142 other downstream 5351 19661109 ~ 19661926 (+)
asb1 asb1 other downstream 625255 20269646 ~ 20281952 (+)
G1786330 NA other downstream 627423 20283181 ~ 20284571 (+)
G1787719 NA other downstream 1478507 21134265 ~ 21136477 (+)
G1788811 LOC106581691 other downstream 2339606 21995364 ~ 21996093 (+)

Expression


Co-expression Network