LOC110501573 (LOC106586130)


Basic Information

Item Value
gene id LOC110501573
gene name LOC106586130
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19689016 ~ 19726868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579237.2
CCCTGTGTTTTTAGACATTCCTTGTACTGCTCCCATCATGGTAGTCTGTCTGGCCCAGAGTATGGTGCAGAGGAGCGGCCGCTGGCTCCTGCCGTTCCCTACTGCCCTGTCTCTGGTCTACACCAGGGCTGCAGGAGGCACCCCTTCTCCCTCAGTCGCCCAACCGTCCACCTCCCAGGATAAGATTCGGACCGAGGATGACCTCCCCAGGATTAAAACCAGGGAGATGTTGTACAGATTGTATGTCCAAGGCTACTACAAGCGCCTACATGAGCTACAGGTGTATGAGAAGCAGCTGTACGGCCCCATGTACAAAATAGGCGTAGGCAGCATTAACTCCGTTGTTCTCAACAGTGTGGAGCTACTGGAGGAGCTGCTTAGGAAGGATGAGAGGTTCCCCAGCCGAGGAGACATGTCCCTCTGGACAGACTACCGGGACCTGAGGGGCATTGGTTACGGCCCCTTCACTGAGGAAGGGGTAAAGTGGTACAATCTGAGGACTGTGCTGAACAAGCGCATGCTGCACCCTAAAGACTCGGTGCAGTACGGAGACGTGGTCAACGAGGTGGTCAGCGACCTGATCAAGAGGATCTACCACCTACGCCGGACCAGCCCCACGGGAGACCGGGTGAACAACCTGTCCAATGAGCTCTACCGATTCTCTCTGGAGGGAATCTCTTCCATCCTGTTTGAGACTCGGATCGGCTGTCTGGAGGAAGAGATCCCAGTGGAGACGCAGCACTTCATCGATTCCATCGCTCAGATGTTCTCCTACAGCTTGCCGGTGGCCATGCTGCCCAAGTGGAGCCGCAACATCCTGCCATTCTATGGGCGCTACATCGCTGGCTGGGAGGGCATCTTCAAATTCTCTGTGAAGTTTATTGAGATGAAGATGGAGGCAATTCAGAAGCGAGTGGACACAAACCAGGAAGTTGAGGGAGAATACCTAACGTACCTCCTCTCCAATACAAAGATGACCAATAAGGAGGTGTATGGCAGCGTCGCTGAGCTGTTATTGGCTGGAGTCGATACGACATCCAATACCATGATGTGGGCGATGTACCTGCTGTCCAGGGACTCCAATGTGCAGAACACCCTTTATCAGGAGGTGTCACGCTGTGTACCAGGAGACAACATTCCATCTGCTCAAGATGTCAACTGCATGCCATACCTCAAGGCTGTAATCAAGGAAACACTAAGAATGTACCCTGTTGTCCCCCTGAACTCACGCATCATGGCAGAGAAGGATGTCATTATTGGCGGACATTTTTTCCCCAAGAAGACTTCGTTTACAATGTGCCACTACGCCATCAGCCAAGATGAAAAGACATTCCCAGAACCATCGAAGTTCAAGCCTGAACGATGGTTGAGGGACGGCCGAGTCCGGCCAAACCCCTTTGGCTCTATCCCATTTGGTTTTGGGGTTCGGGGTTGCGTAGGTCGTCGGATAGCTGAACTGGAGATGTACCTGGCTTTGTCACGGATAATCAAGCTATTTGAAATCAGACCGGACCCCAGCATAAGAGAGGTGAAAGCTCTCAATCGCTCCGTCTTAGTAGCAGACAGGCAAGTCAATCTGCACTTCCTGGAGAGGACGGACAAAGCTGCCCTTTGATATGTTAAAGACAGGTGATAGCCATTTGTCACCAAGCAGCCTACAATATCTATCGCTgaatgtaaataaaaacacactaCAGTTCAAAGGTTTAgggtcaattagaaatgtccttgttttagaaagataagcaattttttttgtccattt
>XM_021579238.2
TCCCTCAGTCGCCCAACCGTCCACCTCCCAGGATAAGATTCGGACCGAGGATGACCTCCCCAGGATTAAAACCAGGGAGATGTTGTACAGATTGTATGTCCAAGGCTACTACAAGCGCCTACATGAGCTACAGTGTGGAGCTACTGGAGGAGCTGCTTAGGAAGGATGAGAGGTTCCCCAGCCGAGGAGACATGTCCCTCTGGACAGACTACCGGGACCTGAGGGGCATTGGTTACGGCCCCTTCACTGAGGAAGGGGTAAAGTGGTACAATCTGAGGACTGTGCTGAACAAGCGCATGCTGCACCCTAAAGACTCGGTGCAGTACGGAGACGTGGTCAACGAGGTGGTCAGCGACCTGATCAAGAGGATCTACCACCTACGCCGGACCAGCCCCACGGGAGACCGGGTGAACAACCTGTCCAATGAGCTCTACCGATTCTCTCTGGAGGGAATCTCTTCCATCCTGTTTGAGACTCGGATCGGCTGTCTGGAGGAAGAGATCCCAGTGGAGACGCAGCACTTCATCGATTCCATCGCTCAGATGTTCTCCTACAGCTTGCCGGTGGCCATGCTGCCCAAGTGGAGCCGCAACATCCTGCCATTCTATGGGCGCTACATCGCTGGCTGGGAGGGCATCTTCAAATTCTCTGTGAAGTTTATTGAGATGAAGATGGAGGCAATTCAGAAGCGAGTGGACACAAACCAGGAAGTTGAGGGAGAATACCTAACGTACCTCCTCTCCAATACAAAGATGACCAATAAGGAGGTGTATGGCAGCGTCGCTGAGCTGTTATTGGCTGGAGTCGATACGACATCCAATACCATGATGTGGGCGATGTACCTGCTGTCCAGGGACTCCAATGTGCAGAACACCCTTTATCAGGAGGTGTCACGCTGTGTACCAGGAGACAACATTCCATCTGCTCAAGATGTCAACTGCATGCCATACCTCAAGGCTGTAATCAAGGAAACACTAAGAATGTACCCTGTTGTCCCCCTGAACTCACGCATCATGGCAGAGAAGGATGTCATTATTGGCGGACATTTTTTCCCCAAGAAGACTTCGTTTACAATGTGCCACTACGCCATCAGCCAAGATGAAAAGACATTCCCAGAACCATCGAAGTTCAAGCCTGAACGATGGTTGAGGGACGGCCGAGTCCGGCCAAACCCCTTTGGCTCTATCCCATTTGGTTTTGGGGTTCGGGGTTGCGTAGGTCGTCGGATAGCTGAACTGGAGATGTACCTGGCTTTGTCACGGATAATCAAGCTATTTGAAATCAGACCGGACCCCAGCATAAGAGAGGTGAAAGCTCTCAATCGCTCCGTCTTAGTAGCAGACAGGCAAGTCAATCTGCACTTCCTGGAGAGGACGGACAAAGCTGCCCTTTGATATGTTAAAGACAGGTGATAGCCATTTGTCACCAAGCAGCCTACAATATCTATCGCTgaatgtaaataaaaacacactaCAGTTCAAAGGTTTAgggtcaattagaaatgtccttgttttagaaagataagcaattttttttgtccattt

Function

NR:

description
sterol 26-hydroxylase, mitochondrial isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00488 CYP27A1; cholestanetriol 26-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579237.2 False 1765 mRNA 0.51 9 19689016 19726868
XM_021579238.2 True 1544 mRNA 0.50 9 19689163 19726868

Neighbor

gene id symbol gene type direction distance location
LOC110501572 LOC106581856 coding upstream 3266 19679303 ~ 19686002 (+)
plcd4b plcd4 coding upstream 33258 19630160 ~ 19655758 (+)
LOC110501568 cnot9 coding upstream 61062 19603742 ~ 19627954 (+)
ybey ybey coding upstream 116070 19570580 ~ 19572946 (+)
LOC118943580 cssa21h2orf88 coding upstream 237894 19444418 ~ 19451122 (+)
zgc:66484 LOC106581857 coding downstream 7419 19734287 ~ 19743949 (+)
LOC110502116 NA coding downstream 145279 19872147 ~ 19872697 (+)
adarb1b LOC106581860 coding downstream 270971 19997839 ~ 20175660 (+)
traf3ip1 traf3ip1 coding downstream 479534 20206402 ~ 20259273 (+)
asb1 asb1 coding downstream 542778 20269646 ~ 20281952 (+)
G1785961 NA non-coding upstream 15182 19673600 ~ 19673834 (+)
G1785953 NA non-coding upstream 22847 19665910 ~ 19666169 (+)
G1785952 NA non-coding upstream 23356 19665448 ~ 19665660 (+)
G1785951 NA non-coding upstream 23798 19665000 ~ 19665218 (+)
G1786002 NA non-coding downstream 38770 19765638 ~ 19765914 (+)
G1786006 NA non-coding downstream 41161 19768029 ~ 19768416 (+)
G1786007 NA non-coding downstream 41605 19768473 ~ 19768832 (+)
G1786167 NA non-coding downstream 269812 19996680 ~ 19997210 (+)
G1786280 NA non-coding downstream 457031 20183899 ~ 20184166 (+)
G1785947 znf142 other upstream 27090 19661109 ~ 19661926 (+)
LOC110501548 LOC106586143 other upstream 491302 19186076 ~ 19197714 (+)
G1784476 asic4 other upstream 921876 18766319 ~ 18767140 (+)
G1786330 NA other downstream 556313 20283181 ~ 20284571 (+)
G1787719 NA other downstream 1407397 21134265 ~ 21136477 (+)
G1788811 LOC106581691 other downstream 2268496 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 2271605 21998473 ~ 21999623 (+)

Expression


Co-expression Network