vil1 (vil1)


Basic Information

Item Value
gene id vil1
gene name vil1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19743720 ~ 19763860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579240.2
GAGACAAAGTTCAGGTGCTATAAACGGGTTGGTGAGATGGGCAGGTAGTGACacatctcaccctctcctctcctctccactccactcctggTCCCTTCACATCCGGTATCTTCTCCAAGCTGAATCTGGCACCATGCCACAGATCGAGGTCAAAACCCAAGTTGCAAAAGTCCTCAATAAAACCACGCCAGGGCTGCAGATATGGAGGATAGAGGCCTTGGAGATGGTGCCTTTCCCTTCTAAAGCATATGGAAATTTCTATGAAGGAGACAGCTATATCATTCTATACACCAATAAGATGAACAGCTCATTCACCTACGACATCCACTTTTGGCTCGGAAAGGACACCTCCAACGACGAGCAGGGGGCGGCGGCCATCTACACCACCATGATGGACGAGCACCTGGGGGGTGTGGCTGTGCAGCACCGCGAGGCGCAGGGCTATGAGAGCGACACCTTCCGTGGATACTTCAAACAGGGCATCATCTACAAGAAGGGCGGCGTGGCATCTGGGATGAAGCAGGTGGAGACCAACACCTACAACATCCGTCGCCTGCTCCATGTCAAGGGAAAAAAGCATGTGGTGGCTGGAGAGGTGGACATGAGCTGGAGCAGCTTCAACAAGGGGGATGTGTTCCTGCTGGACCTGGGCAACCTCATCATCCAGTGGAATGGACCCAAGAGCAACCGCATGGAAAAACTCAAGGGGATGACTCTAGCCAAAGACATccgtgacagggagagagggggacgggCACAGGTGAGCGTGGTGGAAGGGGACGACGAGAAGTCTTCAGAGGAGGCCATGAAGCTGATGAAACAGCACctaggagagacaagacgggaCATCAGGGACTGCATCGCACCTGACGACATCGTCGACCAAAAGCTGAAGTCCAGCGTGAAGCTCTTTCATATCTCAGATGCCCAGGGGAACCTTGTGGTGCAGGAAGTGGCAGTGAAGCCTCTGACTCAGGACCTGTTGAATCACGAGGACTGCTTTCTGTTGGATCAAGGTGGTACACGAATCTTTATCTGGAAAGGAAAAAAGGCTTCCAAGACAGAGCGGTCTGAGTCTTTGGATAAAGCAGAAGCATACAAGAAGGCGAAGGGCTACCCTATCTCCACCTACATCGAGATGGTGAATGATGGTGCTGAGTCTGCCGTATTCAAGCAGCTTTTCCAGAGGTGGACCGTGAAGGGTCAGACTGTGGGGATGGGCACCACAAGCAGCACAGGGAAAATTGCCAAGGTTGAGCAGATCAAGTTTGATGCAACTTCCATGCATGCAAGGCCTGACCTGGCTGCCCAGCAGAAAATGGTGGACGACGGAACAGGCGAAGCAGAGGTGTGGAGGTTAGAGGACAGTGAGCTGGTGCCTGTGGACAGGAAGTGGTTGGGCCACTTCTATGGAGGCGACTGCTATCTCATCCTCTACAAATATGAAGTCAGCAACAGGAGTCACTACATGCTATACATGTGGCAGGGTCGTCATGCGACCACGGGAGAGCTAGCTGCCTCTGCTTTCCAAGCCGTGAACATCGACCGGCAGTACAACGGGGAGCCAGTTCAGGTCCGAGTGCCCATGGGGAAAGAACCACTCCACCTCATGGCCATATTCAAGGGCAAGATGGTGGTCTATGAGGAGGGGAGCTCCAGAGTCAACTCTAAACATGTCCAGCCGGCAGTTCGTCTCTTCCACATCCACGGCACCAACGAGTTCAACACCCGCGCCATTGAAGTGCCGGCACGCTCTTCGTCCCTCAACTCCAACGATGTCTTTGTGCTCAGCACTGACACTTGCTGCTATCTGTGGTACGGAAAGGGCTGCAGTGGCGATGAGCGAGAGATGGGCAAATCCCTGGCAGACATCATCTCCAGGAGGGAAAAACAGGTCATTGCAGAGGGCCAGGAGCCGGCTCACTTCTGGGTCAATCTCGGAGGCAAGTCCCAGTATGCCGACAGCAAGAGGCTTCAGGAAGAGCACACAAATATCACCCCACGTCTCTTCGAGTGCTCCAATCAGACAGGCCGCTTCCTGGCCACGGAGATCACCAACTTCAACCAGGACGACCTGGACGAAGATGACATCATGTTGCTGGACATATGGGACATGGTGTTCCTGTGGATCGGCAAGGGAGCCAATCAAATAGAGAAGGACAACGTGGTCCCCACGGCACAAGAATACCTGAAGTCCCACCCAGGGGGTCGGGATGTAGACACCCCCATCGTGATGATCAAACAGGGCTTTGAGCCTCCCACCTTCACTGGCTGGTTCCACGCCTGGGACCCACACATGTGGAGTGGAGGGAAGTCCTACCAAGAATTGAAGGCTGAGCTTGGAGATGCCACTGACATCATCCAGATCACGGTGGAGAGGACCACATCCAATTCCACTCAGAATAACTCCAAGAACACTGGAATACCACTGTTGCAACCTACCGTTCAGGCCACCTTCCCTGCAGACAAGCTGTTGAACTGCCAGACAGAGGACCTGCCCGAAGGGGTTGACCCCACCAAGAAAGAGGAGCATCTTTCCAATGATGACTTTGCTCTGATCCTGGGTGTGTCCAGGGCAGAGTTCTACTCCATGCCCAACTGGAAGCAGCAGAATATGAAGAAAGAGAAGGGTCTATTCTAGGAGTATATCTACACCGTGGGCCTCATTTTGACAGTGTGTAATACTGTCAAATCTTCTCAAACTCTATTTCAAAAGAAGTTTGGAATGCAAGCGGTCGAAATTCTGCATCTTGAATCTGCACTGTTATTTGTGCATCTTAGACCTGCAGAAATATTACTCTAGCGTGGACATGACTTTTTAAATGATCCCCACTAAAACAAAAGTATATGGAGTATTTCAGACATGGTTGACACTTTTTCGCGCTTTCAAAATGAGGCCCCTCGTGTTTTGTCATCTAGCCTTGCACTTctactcttagccaagagagtgTGTGAATGAGTGGGCCGTTCTCAAATAACTGTAAACAACATATTAAAGCGCCTTTAGGTTTAGTCTTGCAAATAATCTATGATTTGTTTTCTTGCTTCTGAAATGTCGCTGTTAAAATGTAGGCAATCGAGTTATGAAGATGACATTTGTAGTTGATAGAAAGGATTCTACACATTCTATTATTGGAGATTTAGCATAGGCTTCATTTGCAGCACTTTCCCCCTGAATTGCTACTTGTGTCACAGAATTATATCTGGATATGTAATGTGCCTGTCAGGCATTTCAAAATAAGTAGAATGTGATGTTGGTTCTATACTTTATGTCCACAATTAGCCTTAATATTGAAAACATATCTGCAACAATATATTTGCAATCTTCAGAGGACCACAAGGGCTTAGTTTATTAGTAGGTACTTTGTGTTTCATAATATACATGTTGAGGTGTAACATATCAATGAAATTATGACTGTCAAATGGAGATGTCTATTGGGGTATTTCGTTTTTTGCTATGTTGGATAAGCAGATGAATACATCTCTATGAAGATCCTTCATTTGCAATGCTACAATGACAGTCAATAAAGAAGACCCTATTCCCCA
>XM_021579239.2
agagggagagagagcgcaaAGTTCAGGTGCTGTAAATCGCATGGTGAGATGTACAGGTAGTCTGCTGCTGCCTGCTAGATCCTGACACATCtcgccctctcctctccactcctgttccctcCACATCAGGTATCTTCTCCAAGCTGAATCTGGCACCATGCCACAGATCGAGGTCAAAACCCAAGTTGCAAAAGTCCTCAATAAAACCACGCCAGGGCTGCAGATATGGAGGATAGAGGCCTTGGAGATGGTGCCTTTCCCTTCTAAAGCATATGGAAATTTCTATGAAGGAGACAGCTATATCATTCTATACACCAATAAGATGAACAGCTCATTCACCTACGACATCCACTTTTGGCTCGGAAAGGACACCTCCAACGACGAGCAGGGGGCGGCGGCCATCTACACCACCATGATGGACGAGCACCTGGGGGGTGTGGCTGTGCAGCACCGCGAGGCGCAGGGCTATGAGAGCGACACCTTCCGTGGATACTTCAAACAGGGCATCATCTACAAGAAGGGCGGCGTGGCATCTGGGATGAAGCAGGTGGAGACCAACACCTACAACATCCGTCGCCTGCTCCATGTCAAGGGAAAAAAGCATGTGGTGGCTGGAGAGGTGGACATGAGCTGGAGCAGCTTCAACAAGGGGGATGTGTTCCTGCTGGACCTGGGCAACCTCATCATCCAGTGGAATGGACCCAAGAGCAACCGCATGGAAAAACTCAAGGGGATGACTCTAGCCAAAGACATccgtgacagggagagagggggacgggCACAGGTGAGCGTGGTGGAAGGGGACGACGAGAAGTCTTCAGAGGAGGCCATGAAGCTGATGAAACAGCACctaggagagacaagacgggaCATCAGGGACTGCATCGCACCTGACGACATCGTCGACCAAAAGCTGAAGTCCAGCGTGAAGCTCTTTCATATCTCAGATGCCCAGGGGAACCTTGTGGTGCAGGAAGTGGCAGTGAAGCCTCTGACTCAGGACCTGTTGAATCACGAGGACTGCTTTCTGTTGGATCAAGGTGGTACACGAATCTTTATCTGGAAAGGAAAAAAGGCTTCCAAGACAGAGCGGTCTGAGTCTTTGGATAAAGCAGAAGCATACAAGAAGGCGAAGGGCTACCCTATCTCCACCTACATCGAGATGGTGAATGATGGTGCTGAGTCTGCCGTATTCAAGCAGCTTTTCCAGAGGTGGACCGTGAAGGGTCAGACTGTGGGGATGGGCACCACAAGCAGCACAGGGAAAATTGCCAAGGTTGAGCAGATCAAGTTTGATGCAACTTCCATGCATGCAAGGCCTGACCTGGCTGCCCAGCAGAAAATGGTGGACGACGGAACAGGCGAAGCAGAGGTGTGGAGGTTAGAGGACAGTGAGCTGGTGCCTGTGGACAGGAAGTGGTTGGGCCACTTCTATGGAGGCGACTGCTATCTCATCCTCTACAAATATGAAGTCAGCAACAGGAGTCACTACATGCTATACATGTGGCAGGGTCGTCATGCGACCACGGGAGAGCTAGCTGCCTCTGCTTTCCAAGCCGTGAACATCGACCGGCAGTACAACGGGGAGCCAGTTCAGGTCCGAGTGCCCATGGGGAAAGAACCACTCCACCTCATGGCCATATTCAAGGGCAAGATGGTGGTCTATGAGGAGGGGAGCTCCAGAGTCAACTCTAAACATGTCCAGCCGGCAGTTCGTCTCTTCCACATCCACGGCACCAACGAGTTCAACACCCGCGCCATTGAAGTGCCGGCACGCTCTTCGTCCCTCAACTCCAACGATGTCTTTGTGCTCAGCACTGACACTTGCTGCTATCTGTGGTACGGAAAGGGCTGCAGTGGCGATGAGCGAGAGATGGGCAAATCCCTGGCAGACATCATCTCCAGGAGGGAAAAACAGGTCATTGCAGAGGGCCAGGAGCCGGCTCACTTCTGGGTCAATCTCGGAGGCAAGTCCCAGTATGCCGACAGCAAGAGGCTTCAGGAAGAGCACACAAATATCACCCCACGTCTCTTCGAGTGCTCCAATCAGACAGGCCGCTTCCTGGCCACGGAGATCACCAACTTCAACCAGGACGACCTGGACGAAGATGACATCATGTTGCTGGACATATGGGACATGGTGTTCCTGTGGATCGGCAAGGGAGCCAATCAAATAGAGAAGGACAACGTGGTCCCCACGGCACAAGAATACCTGAAGTCCCACCCAGGGGGTCGGGATGTAGACACCCCCATCGTGATGATCAAACAGGGCTTTGAGCCTCCCACCTTCACTGGCTGGTTCCACGCCTGGGACCCACACATGTGGAGTGGAGGGAAGTCCTACCAAGAATTGAAGGCTGAGCTTGGAGATGCCACTGACATCATCCAGATCACGGTGGAGAGGACCACATCCAATTCCACTCAGAATAACTCCAAGAACACTGGAATACCACTGTTGCAACCTACCGTTCAGGCCACCTTCCCTGCAGACAAGCTGTTGAACTGCCAGACAGAGGACCTGCCCGAAGGGGTTGACCCCACCAAGAAAGAGGAGCATCTTTCCAATGATGACTTTGCTCTGATCCTGGGTGTGTCCAGGGCAGAGTTCTACTCCATGCCCAACTGGAAGCAGCAGAATATGAAGAAAGAGAAGGGTCTATTCTAGGAGTATATCTACACCGTGGGCCTCATTTTGACAGTGTGTAATACTGTCAAATCTTCTCAAACTCTATTTCAAAAGAAGTTTGGAATGCAAGCGGTCGAAATTCTGCATCTTGAATCTGCACTGTTATTTGTGCATCTTAGACCTGCAGAAATATTACTCTAGCGTGGACATGACTTTTTAAATGATCCCCACTAAAACAAAAGTATATGGAGTATTTCAGACATGGTTGACACTTTTTCGCGCTTTCAAAATGAGGCCCCTCGTGTTTTGTCATCTAGCCTTGCACTTctactcttagccaagagagtgTGTGAATGAGTGGGCCGTTCTCAAATAACTGTAAACAACATATTAAAGCGCCTTTAGGTTTAGTCTTGCAAATAATCTATGATTTGTTTTCTTGCTTCTGAAATGTCGCTGTTAAAATGTAGGCAATCGAGTTATGAAGATGACATTTGTAGTTGATAGAAAGGATTCTACACATTCTATTATTGGAGATTTAGCATAGGCTTCATTTGCAGCACTTTCCCCCTGAATTGCTACTTGTGTCACAGAATTATATCTGGATATGTAATGTGCCTGTCAGGCATTTCAAAATAAGTAGAATGTGATGTTGGTTCTATACTTTATGTCCACAATTAGCCTTAATATTGAAAACATATCTGCAACAATATATTTGCAATCTTCAGAGGACCACAAGGGCTTAGTTTATTAGTAGGTACTTTGTGTTTCATAATATACATGTTGAGGTGTAACATATCAATGAAATTATGACTGTCAAATGGAGATGTCTATTGGGGTATTTCGTTTTTTGCTATGTTGGATAAGCAGATGAATACATCTCTATGAAGATCCTTCATTTGCAATGCTACAATGACAGTCAATAAAGAAGACCCTATTCCCCA

Function

symbol description
vil1 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including actin polymerization or depolymerization; barbed-end actin filament capping; and regulation of lamellipodium morphogenesis. Predicted to act upstream of or within actin filament capping and actin nucleation. Predicted to be located in filopodium tip; microvillus; and ruffle. Predicted to be active in actin cytoskeleton; cytoplasm; and lamellipodium. Is expressed in gut epithelium; intestinal epithelium; and intestine. Orthologous to human VIL1 (villin 1).

NR:

description
villin-1

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K05761 VIL1; villin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579240.2 False 3546 mRNA 0.49 20 19743720 19761865
XM_021579239.2 True 3570 mRNA 0.49 20 19743720 19763860

Neighbor

gene id symbol gene type direction distance location
znf142 znf142 coding downstream 77519 19655763 ~ 19666201 (-)
LOC110501567 usp37 coding downstream 140162 19572445 ~ 19603558 (-)
LOC110501564 mcm3ap coding downstream 173090 19544358 ~ 19570630 (-)
lss lss coding downstream 199535 19530398 ~ 19544185 (-)
LOC110501563 NA coding downstream 218221 19523061 ~ 19525499 (-)
LOC110501577 LOC106581859 coding upstream 5548 19769408 ~ 19787525 (-)
LOC118943631 NA coding upstream 24934 19788794 ~ 19789923 (-)
agr1 LOC106581734 coding upstream 431852 20195712 ~ 20203864 (-)
hdac4 hdac4 coding upstream 615605 20379465 ~ 20660978 (-)
LOC118943627 NA coding upstream 926656 20690516 ~ 20692314 (-)
G1786380 NA non-coding downstream 55314 19687765 ~ 19688406 (-)
G1786379 NA non-coding downstream 56551 19686490 ~ 19687169 (-)
G1785861 NA non-coding downstream 252987 19490519 ~ 19490733 (-)
G1785857 NA non-coding downstream 257385 19486128 ~ 19486335 (-)
G1785752 ankar non-coding downstream 423881 19319492 ~ 19319839 (-)
G1786566 NA non-coding upstream 210460 19974320 ~ 19974561 (-)
G1786579 NA non-coding upstream 225008 19988868 ~ 19989288 (-)
G1786646 NA non-coding upstream 318526 20082386 ~ 20082662 (-)
G1786654 LOC107662719 non-coding upstream 326821 20090681 ~ 20091112 (-)
G1786709 NA non-coding upstream 391603 20155463 ~ 20183323 (-)
G1785753 NA other downstream 421861 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 564536 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 1839769 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2680272 17057104 ~ 17063550 (-)
G1786832 LOC100136012 other upstream 581839 20345699 ~ 20346014 (-)
G1787166 NA other upstream 626656 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2026896 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2654270 22418130 ~ 22419498 (-)
G1790280 NA other upstream 3400621 23164481 ~ 23169363 (-)

Expression


Co-expression Network