LOC110501577 (LOC106581859)


Basic Information

Item Value
gene id LOC110501577
gene name LOC106581859
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19769408 ~ 19787525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958942.1
TTCATCTCAAGCAGTCAGTCAACCACATAGAGAGCACACCAATGACAGTGAGTTGAGGGTTACATAGGAGCTGCAGCACAATGACTCTTGAAATGTAtccgtgtgtgtctctcctgCTCCTGCTGATGGGCAGAGGTGccatTCCCCTAGTGCTCTCCCAGGAGGGGAAAGTATGTTCCAAAACAGTGATCAACTCCTGCAGTGACTGCATCAAATCAGGAGCGTACTGCACGTGGTGCAAACAACTGGTGAGGAGAGCCATATACAAACTTCATCAAACCAGGTGAGCAGGAAGCAGCTCGCTGTGACACCTGGGCTCAGCTCATAGAAAGGGGCTGCATGGAAGAAGACATCATATCTCCCAAGAATGACTTTTCTTCTTCTAAGAACATCTCCCTGTCCAACACTGCATTGGACAAGGGGGAACCCATCCAGCTCCGTCCTCAGGAGGTCAATCTGAAGCTCAGACCAGGACTGCCTCATACATTCACGCTGGACTTTCAGAGAGTGGAGGGCTATCCTGTTGATCTCTACTACCTGATGGATCTCTCCTACTCCATGGAGGATGATTTGAGGAGCATCAAGACTCTGGGAAACGAACTGTTTAACGCTCTGCAAGGCATCACAAAAAAAGGACGAATCGGTTTTGGCTCTTTTGTAGACAAGACTGTCCTGCCATTCACTAACACCAACCCAGAGAAGCTGAATAAGCCATGCGCCGAAACAGAGATGTACTGCCAACCTGCTTTTGGCTACAGACATGTTCTTAGCATGACGGAAAAAAAAGCTGAGTTTGAGAGCAAGGTCAACAAGCAGCGGATCTCTGGGAACTTAGACTCCCCCGAAGGGACGCTGGACGCCATCATGCAGGCTGCAGTCTGTGGGGAAAGGATTGGCTGGAGGAATAGCAGCACTCGGCTTATCGTCCTGACCACCGACGATGGCTTCCACATGGCAGGGGATGGCAAGCTGGCTGGCATACTGGAGCCCAATGATGAGAGATGTTACATGGACAATAACCTGTACAGCAAGAGCAATGAAATGGACTACCCATCTGTTGGTCAAGTGGCTAATCAGTTAGAGAAGAACAACATTCAGCCAATCTTTGCTGTGACGAAGAACATGGAGAAGGTATACAGGGAACTCAGTAAAATGATCCCCAAGTCTGAGGTGGGAGTGTTGTCCGCTGACTCCCATAATGTCGTTGAACTGATAAAAAATGCCTACAACAGGCTCTCCTCCAAAGTGACGGTGACTCATGATGCTCTCCCTGACAACGTGAGAGTCACTTACACTCCACTCTGTCCTGAAGGGGGACCCTCAGGGGACAAAGGAGTGTGTAACAATGTGGGAGTGGGACAGATGGTGTctttcaatgtaacagtgacagcgGATGAATGTATGCAGAGTGAAATTTCTTTCCTGATTGGTCCGTTGGGAATGAAGGACAAGCTGAAGGTGAGCTTGTCGACTCTCTGCAAGTGTGAGTGTGAAAACCCTGTGACGGTCGATTCCCAGTACTGCAACGGGAAGGGCCAAGTCAACTGTGGCATGTGCAGTTGCAAAGCCGGCTTCGTGGGCCAGAAGTGTGAGTGCTCCATCGGGGAGAAGGACGAGAGCTCTCTGAGAGCGGCGTGCCGGAAGGACAACGGCACGGAGTGTGAAGGACgaggggactgtgtgtgtggcatttgcCAGTGCTACACCTTACCAGGCGGCAGCACCTACTACGGCACGAATTGCGAGTGTGAAAACGAGAGCTGCGAGAAGTTCCAGAACAAACTGTGTGGAGGGAACGGAAAATGCCGTTGCAAAAATTGCGAATGCAAACCCGGGTACGAGGGCACCGCCTGCCAATGCAAGAAGTCGGACGAGCAGTGTCGCACACCAAGCGGGAGTGTGTGCAGCGGCAGGGGCACGTGCAAGTGTAACCAGTGCAAGTGTATGGAGGGCTACCAGCGGCCCTACTGTCTGACCTGTCCCGCCTGCCAAACCACCTGTATAACCAAGGGGAAATGCATTGAGTGTCTGGGCTTTCAGACAGGCCCATTCAGTAAGAACTGCTCCCAGGCCTGTACGAGTATTAGTGAATTCAAGATGGTGGAGACGTTGCCACCTGGTAAGCCTTGTGATGTGAGGGATGTGGAGAGCTGCCGGGTGTTCTTTGCCATTAAACAGTTGGACGGAGAGGACAACTACACCGCCCAAATACTAAAGACCAGAGAGTGTCCCAAGTTGCCAAACATCTATGCCATCATTGGAGGCTCCATCGTAGGCGTGACTGTCATCGGAATCCTGATCCTGCTCTTCATCAAAGTCCTCTTCACATTGCAAGACCTGAAGGAGTACCGCAAGTTTATGAATGAGGCGCAGAAAACCAGGTGGTCAGAGAATAAGAATCCAATATTCCAGGAGGCAACCACCACCGTGGCTAACCCTACCTTCAGTGGAGAATAACTTCAGAGAAGTCAGTCAAGACATTCGGTTGGATGCAAATGCATACAtttattgtttctgttttaatGTGCATTTATGTAGATTAGTTCATTTAATTTATACATTGGTCTGTCTTTTTGTGTGTCCCGAGTCTGAACATTTAGAGAATGACTCGAAACTTGTACTGCTGGAGTGTTGCTACATGATCTTATGTCTAGTTGGAGTCAATTCCATTTTAGCTCGATTAAATGCAGGAATTTGTTTAGAAAAGCACTGAATAGTTTTGTGCAAGCCTGGTTTTATTTTGTTTGGGATTATAAACTGTTGTGTAAAAAGTTGGACACATTGTTCAACTTCATGAAACctattaaaggcccaatgcagtcaGCGTGATTCTCCAGTGTTTTATATACATtcccacactgaggttggaataatactgtgaaattgtaaaaataatgataatgcccttttagtgtaagagctgtttgaaaagaccacctgaaatgtcagcctgttttggtgggatggagttttggtgcCTGGTGACATCGCTAGGCGGCAAATTAGttgatagaccaataagaaatagtaacaaacctctctgccaataacagctagttttcagtattaccactcccagacagtcctcgctaaattattgcttgagaaatttctCATTGCTAAGATTTTTTTTGGTACAATTTAAAATAAAACAATCACATGTtactcagaaatgatttgatatcgaGATAAAATGGcagcattggacctttaagcaATTATTTTTGTAGCTTTTATGTAGTTATCTGCAATGTACCATGACTGTACATCATCATGAGTAAATATTGTATAAAGAAGCAAGTGAATTATGAAATAAAACTCTCTTGATTT
>XM_036958940.1
TACAAAATAACTGTGATGTTCATCTCAAGCAGTCAGTCAACCACATAGAGAGCACACCAATGACAGTGAGTTGAGGGTTACATAGGAGCTGCAGCACAATGACTCTTGAAATGTAtccgtgtgtgtctctcctgCTCCTGCTGATGGGCAGAGGTGccatTCCCCTAGTGCTCTCCCAGGAGGGGAAAGTATGTTCCAAAACAGTGATCAACTCCTGCAGTGACTGCATCAAATCAGGAGCGTACTGCACGTGGTGCAAACAACTGAACTTCATCAAACCAGGTGAGCAGGAAGCAGCTCGCTGTGACACCTGGGCTCAGCTCATAGAAAGGGGCTGCATGGAAGAAGACATCATATCTCCCAAGAATGACTTTTCTTCTTCTAAGAACATCTCCCTGTCCAACACTGCATTGGACAAGGGGGAACCCATCCAGCTCCGTCCTCAGGAGGTCAATCTGAAGCTCAGACCAGGACTGCCTCATACATTCACGCTGGACTTTCAGAGAGTGGAGGGCTATCCTGTTGATCTCTACTACCTGATGGATCTCTCCTACTCCATGGAGGATGATTTGAGGAGCATCAAGACTCTGGGAAACGAACTGTTTAACGCTCTGCAAGGCATCACAAAAAAAGGACGAATCGGTTTTGGCTCTTTTGTAGACAAGACTGTCCTGCCATTCACTAACACCAACCCAGAGAAGCTGAATAAGCCATGCGCCGAAACAGAGATGTACTGCCAACCTGCTTTTGGCTACAGACATGTTCTTAGCATGACGGAAAAAAAAGCTGAGTTTGAGAGCAAGGTCAACAAGCAGCGGATCTCTGGGAACTTAGACTCCCCCGAAGGGACGCTGGACGCCATCATGCAGGCTGCAGTCTGTGGGGAAAGGATTGGCTGGAGGAATAGCAGCACTCGGCTTATCGTCCTGACCACCGACGATGGCTTCCACATGGCAGGGGATGGCAAGCTGGCTGGCATACTGGAGCCCAATGATGAGAGATGTTACATGGACAATAACCTGTACAGCAAGAGCAATGAAATGGACTACCCATCTGTTGGTCAAGTGGCTAATCAGTTAGAGAAGAACAACATTCAGCCAATCTTTGCTGTGACGAAGAACATGGAGAAGGTATACAGGGAACTCAGTAAAATGATCCCCAAGTCTGAGGTGGGAGTGTTGTCCGCTGACTCCCATAATGTCGTTGAACTGATAAAAAATGCCTACAACAGGCTCTCCTCCAAAGTGACGGTGACTCATGATGCTCTCCCTGACAACGTGAGAGTCACTTACACTCCACTCTGTCCTGAAGGGGGACCCTCAGGGGACAAAGGAGTGTGTAACAATGTGGGAGTGGGACAGATGGTGTctttcaatgtaacagtgacagcgGATGAATGTATGCAGAGTGAAATTTCTTTCCTGATTGGTCCGTTGGGAATGAAGGACAAGCTGAAGGTGAGCTTGTCGACTCTCTGCAAGTGTGAGTGTGAAAACCCTGTGACGGTCGATTCCCAGTACTGCAACGGGAAGGGCCAAGTCAACTGTGGCATGTGCAGTTGCAAAGCCGGCTTCGTGGGCCAGAAGTGTGAGTGCTCCATCGGGGAGAAGGACGAGAGCTCTCTGAGAGCGGCGTGCCGGAAGGACAACGGCACGGAGTGTGAAGGACgaggggactgtgtgtgtggcatttgcCAGTGCTACACCTTACCAGGCGGCAGCACCTACTACGGCACGAATTGCGAGTGTGAAAACGAGAGCTGCGAGAAGTTCCAGAACAAACTGTGTGGAGGGAACGGAAAATGCCGTTGCAAAAATTGCGAATGCAAACCCGGGTACGAGGGCACCGCCTGCCAATGCAAGAAGTCGGACGAGCAGTGTCGCACACCAAGCGGGAGTGTGTGCAGCGGCAGGGGCACGTGCAAGTGTAACCAGTGCAAGTGTATGGAGGGCTACCAGCGGCCCTACTGTCTGACCTGTCCCGCCTGCCAAACCACCTGTATAACCAAGGGGAAATGCATTGAGTGTCTGGGCTTTCAGACAGGCCCATTCAGTAAGAACTGCTCCCAGGCCTGTACGAGTATTAGTGAATTCAAGATGGTGGAGACGTTGCCACCTGGTAAGCCTTGTGATGTGAGGGATGTGGAGAGCTGCCGGGTGTTCTTTGCCATTAAACAGTTGGACGGAGAGGACAACTACACCGCCCAAATACTAAAGACCAGAGAGTGTCCCAAGTTGCCAAACATCTATGCCATCATTGGAGGCTCCATCGTAGGCGTGACTGTCATCGGAATCCTGATCCTGCTCTTCATCAAAGTCCTCTTCACATTGCAAGACCTGAAGGAGTACCGCAAGTTTATGAATGAGGCGCAGAAAACCAGGTGGTCAGAGAATAAGAATCCAATATTCCAGGAGGCAACCACCACCGTGGCTAACCCTACCTTCAGTGGAGAATAACTTCAGAGAAGTCAGTCAAGACATTCGGTTGGATGCAAATGCATACAtttattgtttctgttttaatGTGCATTTATGTAGATTAGTTCATTTAATTTATACATTGGTCTGTCTTTTTGTGTGTCCCGAGTCTGAACATTTAGAGAATGACTCGAAACTTGTACTGCTGGAGTGTTGCTACATGATCTTATGTCTAGTTGGAGTCAATTCCATTTTAGCTCGATTAAATGCAGGAATTTGTTTAGAAAAGCACTGAATAGTTTTGTGCAAGCCTGGTTTTATTTTGTTTGGGATTATAAACTGTTGTGTAAAAAGTTGGACACATTGTTCAACTTCATGAAACctattaaaggcccaatgcagtcaGCGTGATTCTCCAGTGTTTTATATACATtcccacactgaggttggaataatactgtgaaattgtaaaaataatgataatgcccttttagtgtaagagctgtttgaaaagaccacctgaaatgtcagcctgttttggtgggatggagttttggtgcCTGGTGACATCGCTAGGCGGCAAATTAGttgatagaccaataagaaatagtaacaaacctctctgccaataacagctagttttcagtattaccactcccagacagtcctcgctaaattattgcttgagaaatttctCATTGCTAAGATTTTTTTTGGTACAATTTAAAATAAAACAATCACATGTtactcagaaatgatttgatatcgaGATAAAATGGcagcattggacctttaagcaATTATTTTTGTAGCTTTTATGTAGTTATCTGCAATGTACCATGACTGTACATCATCATGAGTAAATATTGTATAAAGAAGCAAGTGAATTATGAAATAAAACTCTCTTGATTT
>XM_036958941.1
TTACAAAATAACTGTGATGTTCATCTCAAGCAGTCAGTCAACCACATAGAGAGCACACCAATGACAGTGAGTTGAGGGTTACATAGGAGCTGCAGCACAATGACTCTTGAAATGTAtccgtgtgtgtctctcctgCTCCTGCTGATGGGCAGAGccatTCCCCTAGTGCTCTCCCAGGAGGGGAAAGTATGTTCCAAAACAGTGATCAACTCCTGCAGTGACTGCATCAAATCAGGAGCGTACTGCACGTGGTGCAAACAACTGAACTTCATCAAACCAGGTGAGCAGGAAGCAGCTCGCTGTGACACCTGGGCTCAGCTCATAGAAAGGGGCTGCATGGAAGAAGACATCATATCTCCCAAGAATGACTTTTCTTCTTCTAAGAACATCTCCCTGTCCAACACTGCATTGGACAAGGGGGAACCCATCCAGCTCCGTCCTCAGGAGGTCAATCTGAAGCTCAGACCAGGACTGCCTCATACATTCACGCTGGACTTTCAGAGAGTGGAGGGCTATCCTGTTGATCTCTACTACCTGATGGATCTCTCCTACTCCATGGAGGATGATTTGAGGAGCATCAAGACTCTGGGAAACGAACTGTTTAACGCTCTGCAAGGCATCACAAAAAAAGGACGAATCGGTTTTGGCTCTTTTGTAGACAAGACTGTCCTGCCATTCACTAACACCAACCCAGAGAAGCTGAATAAGCCATGCGCCGAAACAGAGATGTACTGCCAACCTGCTTTTGGCTACAGACATGTTCTTAGCATGACGGAAAAAAAAGCTGAGTTTGAGAGCAAGGTCAACAAGCAGCGGATCTCTGGGAACTTAGACTCCCCCGAAGGGACGCTGGACGCCATCATGCAGGCTGCAGTCTGTGGGGAAAGGATTGGCTGGAGGAATAGCAGCACTCGGCTTATCGTCCTGACCACCGACGATGGCTTCCACATGGCAGGGGATGGCAAGCTGGCTGGCATACTGGAGCCCAATGATGAGAGATGTTACATGGACAATAACCTGTACAGCAAGAGCAATGAAATGGACTACCCATCTGTTGGTCAAGTGGCTAATCAGTTAGAGAAGAACAACATTCAGCCAATCTTTGCTGTGACGAAGAACATGGAGAAGGTATACAGGGAACTCAGTAAAATGATCCCCAAGTCTGAGGTGGGAGTGTTGTCCGCTGACTCCCATAATGTCGTTGAACTGATAAAAAATGCCTACAACAGGCTCTCCTCCAAAGTGACGGTGACTCATGATGCTCTCCCTGACAACGTGAGAGTCACTTACACTCCACTCTGTCCTGAAGGGGGACCCTCAGGGGACAAAGGAGTGTGTAACAATGTGGGAGTGGGACAGATGGTGTctttcaatgtaacagtgacagcgGATGAATGTATGCAGAGTGAAATTTCTTTCCTGATTGGTCCGTTGGGAATGAAGGACAAGCTGAAGGTGAGCTTGTCGACTCTCTGCAAGTGTGAGTGTGAAAACCCTGTGACGGTCGATTCCCAGTACTGCAACGGGAAGGGCCAAGTCAACTGTGGCATGTGCAGTTGCAAAGCCGGCTTCGTGGGCCAGAAGTGTGAGTGCTCCATCGGGGAGAAGGACGAGAGCTCTCTGAGAGCGGCGTGCCGGAAGGACAACGGCACGGAGTGTGAAGGACgaggggactgtgtgtgtggcatttgcCAGTGCTACACCTTACCAGGCGGCAGCACCTACTACGGCACGAATTGCGAGTGTGAAAACGAGAGCTGCGAGAAGTTCCAGAACAAACTGTGTGGAGGGAACGGAAAATGCCGTTGCAAAAATTGCGAATGCAAACCCGGGTACGAGGGCACCGCCTGCCAATGCAAGAAGTCGGACGAGCAGTGTCGCACACCAAGCGGGAGTGTGTGCAGCGGCAGGGGCACGTGCAAGTGTAACCAGTGCAAGTGTATGGAGGGCTACCAGCGGCCCTACTGTCTGACCTGTCCCGCCTGCCAAACCACCTGTATAACCAAGGGGAAATGCATTGAGTGTCTGGGCTTTCAGACAGGCCCATTCAGTAAGAACTGCTCCCAGGCCTGTACGAGTATTAGTGAATTCAAGATGGTGGAGACGTTGCCACCTGGTAAGCCTTGTGATGTGAGGGATGTGGAGAGCTGCCGGGTGTTCTTTGCCATTAAACAGTTGGACGGAGAGGACAACTACACCGCCCAAATACTAAAGACCAGAGAGTGTCCCAAGTTGCCAAACATCTATGCCATCATTGGAGGCTCCATCGTAGGCGTGACTGTCATCGGAATCCTGATCCTGCTCTTCATCAAAGTCCTCTTCACATTGCAAGACCTGAAGGAGTACCGCAAGTTTATGAATGAGGCGCAGAAAACCAGGTGGTCAGAGAATAAGAATCCAATATTCCAGGAGGCAACCACCACCGTGGCTAACCCTACCTTCAGTGGAGAATAACTTCAGAGAAGTCAGTCAAGACATTCGGTTGGATGCAAATGCATACAtttattgtttctgttttaatGTGCATTTATGTAGATTAGTTCATTTAATTTATACATTGGTCTGTCTTTTTGTGTGTCCCGAGTCTGAACATTTAGAGAATGACTCGAAACTTGTACTGCTGGAGTGTTGCTACATGATCTTATGTCTAGTTGGAGTCAATTCCATTTTAGCTCGATTAAATGCAGGAATTTGTTTAGAAAAGCACTGAATAGTTTTGTGCAAGCCTGGTTTTATTTTGTTTGGGATTATAAACTGTTGTGTAAAAAGTTGGACACATTGTTCAACTTCATGAAACctattaaaggcccaatgcagtcaGCGTGATTCTCCAGTGTTTTATATACATtcccacactgaggttggaataatactgtgaaattgtaaaaataatgataatgcccttttagtgtaagagctgtttgaaaagaccacctgaaatgtcagcctgttttggtgggatggagttttggtgcCTGGTGACATCGCTAGGCGGCAAATTAGttgatagaccaataagaaatagtaacaaacctctctgccaataacagctagttttcagtattaccactcccagacagtcctcgctaaattattgcttgagaaatttctCATTGCTAAGATTTTTTTTGGTACAATTTAAAATAAAACAATCACATGTtactcagaaatgatttgatatcgaGATAAAATGGcagcattggacctttaagcaATTATTTTTGTAGCTTTTATGTAGTTATCTGCAATGTACCATGACTGTACATCATCATGAGTAAATATTGTATAAAGAAGCAAGTGAATTATGAAATAAAACTCTCTTGATTT

Function

NR:

description
integrin beta-2-like

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06464 ITGB2, CD18; integrin beta 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958942.1 False 3330 mRNA 0.47 16 19769408 19787506
XM_036958940.1 False 3329 mRNA 0.47 16 19769408 19787524
XM_036958941.1 True 3327 mRNA 0.47 16 19769408 19787525

Neighbor

gene id symbol gene type direction distance location
vil1 vil1 coding downstream 5548 19743720 ~ 19763860 (-)
znf142 znf142 coding downstream 103207 19655763 ~ 19666201 (-)
LOC110501567 usp37 coding downstream 165850 19572445 ~ 19603558 (-)
LOC110501564 mcm3ap coding downstream 198778 19544358 ~ 19570630 (-)
lss lss coding downstream 225223 19530398 ~ 19544185 (-)
LOC118943631 NA coding upstream 1269 19788794 ~ 19789923 (-)
agr1 LOC106581734 coding upstream 408187 20195712 ~ 20203864 (-)
hdac4 hdac4 coding upstream 591940 20379465 ~ 20660978 (-)
LOC118943627 NA coding upstream 902991 20690516 ~ 20692314 (-)
LOC110501586 LOC106581869 coding upstream 943385 20730910 ~ 20739954 (-)
G1786380 NA non-coding downstream 81002 19687765 ~ 19688406 (-)
G1786379 NA non-coding downstream 82239 19686490 ~ 19687169 (-)
G1785861 NA non-coding downstream 278675 19490519 ~ 19490733 (-)
G1785857 NA non-coding downstream 283073 19486128 ~ 19486335 (-)
G1785752 ankar non-coding downstream 449569 19319492 ~ 19319839 (-)
G1786566 NA non-coding upstream 186795 19974320 ~ 19974561 (-)
G1786579 NA non-coding upstream 201343 19988868 ~ 19989288 (-)
G1786646 NA non-coding upstream 294861 20082386 ~ 20082662 (-)
G1786654 LOC107662719 non-coding upstream 303156 20090681 ~ 20091112 (-)
G1786709 NA non-coding upstream 367938 20155463 ~ 20183323 (-)
G1785753 NA other downstream 447549 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 590224 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 1865457 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2705960 17057104 ~ 17063550 (-)
G1786832 LOC100136012 other upstream 558174 20345699 ~ 20346014 (-)
G1787166 NA other upstream 602991 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2003231 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2630605 22418130 ~ 22419498 (-)
G1790280 NA other upstream 3376956 23164481 ~ 23169363 (-)

Expression


Co-expression Network