LOC118943631


Basic Information

Item Value
gene id LOC118943631
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19788794 ~ 19789923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038965.1
CTACAGTTCGTCTAATCACCCCGTTGTATTCAGACGGCAACAAGAAGAGGCATCAGATTCAGAGAAATTGTTGAGCACAAGGCAGCCTTGACAGCAGGCAGAGCTGCTCAGTGGGCAATCTTCGACAGACTGATGTTGGTGAACGGACTGCAGGAGGTGAAGAGGCACTGTGGGAGCCTACAAAGAGCAGCCGGGAACTCTGGAGGCACTGTGCCTACAGCTGCAAGATCAGAGTAATGCAGTGGAGGGAGGAATGGCCTTCTCTGCCTCCTGAAGAGAAGATTGAGTGAACTGACACAAGACCAAGGAAACACCAGGAACACCTAGCAAAAGCTGGTCCTATTGCTGAGACCTCAGATAACAACTGCTATGCTTTCTGAAATCATTCAGCAACCCTGCCTCTGCTCCCTCGGGAGCAGCCTGGTCTCTTGAcgttgacccctgacccctcaccTTCTGAACCCACCCAGAGAAATATAATTTGCCTAGTGATGCGCTAGTGGAGAAGCAACGTGTTATTTCAGTGCATTTGTTGCCATGTTTCCTCTCCTCACATTCCTCACCTGATTTTCTTGTGAGTAATGAGAAAACAATCATCAAAAATGATGGGAATATTGCATTTTGAAAAGCAAATACTTAGATTGAATATGTAGGCAAATTCCGACATCAGTGGACCTGCATTAGAGGTGTCATGAAGAATTAGGGCTGATACAGTATTGCACTATTTAGGCAGCGCAGGGTTCCTGTTACCATTTGTAACAGGGAACAACTTATTAGGCTATAGCTTATTATATTACCAACTGACCTTCAAATAGGCtacagacaatttcttcgacctcatggcttggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038965.1 True 849 mRNA 0.46 3 19788794 19789923

Neighbor

gene id symbol gene type direction distance location
LOC110501577 LOC106581859 coding downstream 1269 19769408 ~ 19787525 (-)
vil1 vil1 coding downstream 24934 19743720 ~ 19763860 (-)
znf142 znf142 coding downstream 122593 19655763 ~ 19666201 (-)
LOC110501567 usp37 coding downstream 185236 19572445 ~ 19603558 (-)
LOC110501564 mcm3ap coding downstream 218164 19544358 ~ 19570630 (-)
agr1 LOC106581734 coding upstream 405789 20195712 ~ 20203864 (-)
hdac4 hdac4 coding upstream 589542 20379465 ~ 20660978 (-)
LOC118943627 NA coding upstream 900593 20690516 ~ 20692314 (-)
LOC110501586 LOC106581869 coding upstream 940987 20730910 ~ 20739954 (-)
LOC100136257 LOC100136257 coding upstream 975989 20765912 ~ 20777157 (-)
G1786380 NA non-coding downstream 100388 19687765 ~ 19688406 (-)
G1786379 NA non-coding downstream 101625 19686490 ~ 19687169 (-)
G1785861 NA non-coding downstream 298061 19490519 ~ 19490733 (-)
G1785857 NA non-coding downstream 302459 19486128 ~ 19486335 (-)
G1785752 ankar non-coding downstream 468955 19319492 ~ 19319839 (-)
G1786566 NA non-coding upstream 184397 19974320 ~ 19974561 (-)
G1786579 NA non-coding upstream 198945 19988868 ~ 19989288 (-)
G1786646 NA non-coding upstream 292463 20082386 ~ 20082662 (-)
G1786654 LOC107662719 non-coding upstream 300758 20090681 ~ 20091112 (-)
G1786709 NA non-coding upstream 365540 20155463 ~ 20183323 (-)
G1785753 NA other downstream 466935 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 609610 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 1884843 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2725346 17057104 ~ 17063550 (-)
G1786832 LOC100136012 other upstream 555776 20345699 ~ 20346014 (-)
G1787166 NA other upstream 600593 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2000833 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2628207 22418130 ~ 22419498 (-)
G1790280 NA other upstream 3374558 23164481 ~ 23169363 (-)

Expression


Co-expression Network