agr1 (LOC106581734)


Basic Information

Item Value
gene id agr1
gene name LOC106581734
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20195712 ~ 20203864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579249.2
CCTGCAAAGTCTTCATTCATTGCTCCATTGTCAGATCCAAAATCAAGATCCTTGGCGTGCACTGGCCAGTGCACCTGAGATTTGGTGCGAGATTGGGAGATTATTAAGAAGTTGGCTTTTGCATAGGGCATTGTAGTTGAGAATCTGACCACCACTTTTGaacttGTGAACGCCATGTATCGGTGGTCTCTCTTTGCCTTGCTCTTTGTCACCTGCATGGAAGTGTCCATACAGAAGAAAACAAAGAAAGGCCCTCAAACTCTCTCAAGAGGATGGGGGGATGACATTACTTGGGTCCAGACCTATGAGGAAGCCCTGATGACAATGACAGAAAGTAAGAAGCCCCTGATGGTCATTCATCACATGGAGGATTGTCCTCATAGTCAAGCTCTGAAGAAGGCGTTTGCTGCTGATAAAGCCGTACAGGAACTTGCCCAAGAGGATTTTGTCATGCTCAATTTGATACATGAGACTACAGACTCCAATCTGGCACCAGATGGCCACTACGTTCCAAGAATTCTCTTTGTTGATCCATCCATGACTGTGCGTGCTGAGCTTGTTGGGAAGTACAGTAACCACATGTTCACCTACAAGCCGAGCGACATCCCGTACTTGGCCGAGAACATGAAGAAAGCCAAGCGTCTACTGCACACTGAACTGTAACCTCACAGCCTTTTCAATAATGTACCCATAATCTACTGGGTTCCTCCCTGTTCCAGAGGGGTTCACTGAGTCTTGGACATTCTTATGTTTACACAGAATGTATACAATAGATCAATCAATAAAGATGAATGACGGTGTGCACTGAA
>XM_021579248.2
GCTGGGTTGTGTATCCCTGTTGCAAATTGTAATAAATTGGATACATTTTTGATTGACTTCAGCAACAACTTATCTCCTTTTGTGAAATTCCTATTACAGTGCATTTGTGTGCTACAATTCATTTGCTTTGTTTCGTGTAATGCCAATCCCATACCTGTTTGGTAAGTTCTGTTGTCTATAAAAAGACCTGAAAATCAAAACCAAGTTACTGTCAGCTTGGACGTAGGCTCCAGACACTCCTCATACGCCTGTGCAATAGaacttGTGAACGCCATGTATCGGTGGTCTCTCTTTGCCTTGCTCTTTGTCACCTGCATGGAAGTGTCCATACAGAAGAAAACAAAGAAAGGCCCTCAAACTCTCTCAAGAGGATGGGGGGATGACATTACTTGGGTCCAGACCTATGAGGAAGCCCTGATGACAATGACAGAAAGTAAGAAGCCCCTGATGGTCATTCATCACATGGAGGATTGTCCTCATAGTCAAGCTCTGAAGAAGGCGTTTGCTGCTGATAAAGCCGTACAGGAACTTGCCCAAGAGGATTTTGTCATGCTCAATTTGATACATGAGACTACAGACTCCAATCTGGCACCAGATGGCCACTACGTTCCAAGAATTCTCTTTGTTGATCCATCCATGACTGTGCGTGCTGAGCTTGTTGGGAAGTACAGTAACCACATGTTCACCTACAAGCCGAGCGACATCCCGTACTTGGCCGAGAACATGAAGAAAGCCAAGCGTCTACTGCACACTGAACTGTAACCTCACAGCCTTTTCAATAATGTACCCATAATCTACTGGGTTCCTCCCTGTTCCAGAGGGGTTCACTGAGTCTTGGACATTCTTATGTTTACACAGAATGTATACAATAGATCAATCAATAAAGATGAATGACGGTGTGCACTGAA

Function

NR:

description
anterior gradient protein 3-like

GO: NA

KEGG:

id description
K20357 AGR3; anterior gradient protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579249.2 False 809 mRNA 0.46 8 20195712 20202996
XM_021579248.2 True 908 mRNA 0.44 8 20195712 20203864

Neighbor

gene id symbol gene type direction distance location
LOC118943631 NA coding downstream 405789 19788794 ~ 19789923 (-)
LOC110501577 LOC106581859 coding downstream 408187 19769408 ~ 19787525 (-)
vil1 vil1 coding downstream 431852 19743720 ~ 19763860 (-)
znf142 znf142 coding downstream 529511 19655763 ~ 19666201 (-)
LOC110501567 usp37 coding downstream 592154 19572445 ~ 19603558 (-)
hdac4 hdac4 coding upstream 175601 20379465 ~ 20660978 (-)
LOC118943627 NA coding upstream 486652 20690516 ~ 20692314 (-)
LOC110501586 LOC106581869 coding upstream 527046 20730910 ~ 20739954 (-)
LOC100136257 LOC100136257 coding upstream 562048 20765912 ~ 20777157 (-)
LOC110501587 LOC106586113 coding upstream 939220 21143084 ~ 21447203 (-)
G1786737 NA non-coding downstream 2253 20193042 ~ 20193459 (-)
G1786733 NA non-coding downstream 4925 20190522 ~ 20190787 (-)
G1786709 NA non-coding downstream 12389 20155463 ~ 20183323 (-)
G1786720 NA non-coding downstream 20068 20171839 ~ 20175644 (-)
G1786654 LOC107662719 non-coding downstream 104600 20090681 ~ 20091112 (-)
G1786751 NA non-coding upstream 16342 20220206 ~ 20221073 (-)
G1786777 NA non-coding upstream 60783 20264647 ~ 20265233 (-)
G1786781 NA non-coding upstream 63698 20267562 ~ 20267764 (-)
G1786788 NA non-coding upstream 77295 20281159 ~ 20281832 (-)
G1786789 NA non-coding upstream 79249 20283113 ~ 20283322 (-)
G1785753 NA other downstream 873853 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 1016528 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 2291761 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 3132264 17057104 ~ 17063550 (-)
G1786832 LOC100136012 other upstream 141835 20345699 ~ 20346014 (-)
G1787166 NA other upstream 186652 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 1586892 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2214266 22418130 ~ 22419498 (-)
G1790280 NA other upstream 2960617 23164481 ~ 23169363 (-)

Expression


Co-expression Network