asb1 (asb1)


Basic Information

Item Value
gene id asb1
gene name asb1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20269646 ~ 20281952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958947.1
CAAGGGTTGCTGATTTCCCCGTTAACTGACTCCAAGACCAGGAAGTCGCACTCTCGTCTCTCAGATAGGGAAAGCGAAAAAAGAGGAGTGATCAGTGAGGTGTCATAAATATATTCAATTACAACAACAATGGCACAACGGACGGTATGACAAAGTCGTTTTGGTAACACTAGCTAGGTAATCACTTTCCTAGTTCTGGCGCTTTTTCGTAGGAGACCCTGCAAAGAAGCGTGAGAAGTTATTATTAGGGAGAAATGGCGGACGGCGGAGGCTTCGAGTTGGGTGATGTTGTCGACCCACCCATTGCGCCGAATATCATCTGTCCCCTTGTCACCGTTTCTGACCTACCCAGCCCGACAGCTGCAGGCCGTAACCTGAAGGAATGGCTGCAGGAGCAGTTCAATAAAAAGCCTGAAGAGCAGAGTGAGGACGCGCTGCTCCACAACGCTGCTTACGTAGGAGACCTGGATACTCTAAGGAACCTGCTGCAGGAGGACAGCTTCAGAgaGCGGATCAACGAGAAGTCTGTATGGTGCTGTGGTTGGCTGCCCTGCACCCCTCTGCGCATCGCTGCCACAGCCGGTCAAGGGGCCTGTGTGGCCTATCTGATAGGCCAGGGGGCCAAGGTGGACCTAGTGGATGTGAAGGGTCAGACGGCCCTCTACGTGGCGGTGGTCAACGGACACCTGGACTGTGTGACCATCCTCCTGGAAGCTGGAGCTGACCCCAACGGCAGCCGCCACCACCGCAGCACTCCCGTCTATCACGCTGCACGGGTAGGCAGGGTGGACATACTCCAAGAGCTCATCAGgttccATGCCGACGTGGATGTGGACCACCAGCTGGGCGCCAGGCCCCCGTTTGGTGCGGCCCGCACCCTCACCACACTGGTGGTGTGCCCGCTCTACATCAGCGCCGCCTACCGCCACCTCCACTGCTTCAGCCTGCTCCTGGCGGCCGGCGCCCAGCCGGACTACAACTACAACGGACCAGTGAGCCGCGAAGCGCTAGCAAAGGGTTTGGCCTCCTGCCTGCTGGATGCGGTGCTGAGACACGGCTGTGAGGCGGCGTTCGTCAGACTGCTGCTAGACCACGGTGCCGAGCCCAGCCTGGTACCCTGGGAGCAGCCCCACCGAGAGGGAGCGACCGCCGGGGGCCGAGAGAGGGTTGACCCCGAAGCCCTGCAGCTCTACTTGGAGGCCAGGAATCCAGTCTACCTCAAAGCAGCTGCCGTGGATCTGGCTTTTTCTCTGATGTGGGTAGAGCACCATGTGCTGGTCAAGGAGAAGGTCAAAGAGGAGGTGGCACAAAGAGTGAAAGAACGGATTCTGCAAGATGCTGAAGGGACTGAGCAAGCTGTGCCTCTTGTTGATAAATAAGAGCGAGAGGACCATAGCCTTGTACAAGAAAAAGGGCTTTTTGCAGCACACTGTAAGAGGCAGAAGAAAGCTGTTGGGACCACTACAGCTAAGTCACTACCTCTGGGCGATGAACATGAAGGCTCTTCCTTCACTGTCCCGAGTGGCCATCGGGGTCTTGGCAGTGCGTCCAGTCTGGTGGAGCGTGTCTTCAGCCATGGTGGCATCATACTGCAGCCTCATCGTGCACAAATGACTGACAGACTTTTATCGAATTTGGTCTTTTGCAAGTGCAATGCATCATAGGGCCCTGAGATAAGAGAAAAAATGTAACTGTTtatgcattacacacacacacacacacacacacacacacacgtagtctCCATGTTCAGGTTTTATCTCCCATCTTTGggatctgtattttttttctcagacAGTCAGGCCAGTGTTCAAATTGTAGGCCTACTTGAAGTTCAGTAGCAGTTGTTTTGATGTACCTTTTAATAAATTATTGTAACTTTATGGCAGAATTGTTTTAGGTGTCTAAAATAtatctggatagagacagagagcactacaatattttgtttttgttgtcatattgatgtatttccatggaaatataaagtttatttgtaaagtaataaatatatatattttt
>XM_036958948.1
CAAGGGTTGCTGATTTCCCCGTTAACTGACTCCAAGACCAGGAAGTCGCACTCTCGTCTCTCAGATAGGGAAAGCGAAAAAAGAGGAGTGATCAGTGAGGTGTCATAAATATATTCAATTACAACAACAATGGCACAACGGACGGTATGACAAAGTCGTTTTGGTAACACTAGCTAGGTAATCACTTTCCTAGTTCTGGCGCTTTTTCGTAGGAGACCCTGCAAAGAAGCGTGAGAAGTTATTATTAGGGAGAAATGGCGGACGGCGGAGGCTTCGAGTTGGGTGATGTTGTCGACCCACCCATTGCGCCGAATATCATCTGTCCCCTTGTCACCGTTTCTGACCTACCCAGCCCGACAGCTGCAGGCCGTAACCTGAAGGAATGGCTGCAGGAGCAGTTCAATAAAAAGCCTGAAGAGCAGAGTGAGGACGCGCTGCTCCACAACGCTGCTTACGTAGGAGACCTGGATACTCTAAGGAACCTGCTGCAGGAGGACAGCTTCAGAgaGCGGATCAACGAGAAGTCTGTATGGTGCTGTGGTTGGCTGCCCTGCACCCCTCTGCGCATCGCTGCCACAGCCGGTCAAGGGGCCTGTGTGGCCTATCTGATAGGCCAGGGGGCCAAGGTGGACCTAGTGGATGTGAAGGGTCAGACGGCCCTCTACGTGGCGGTGGTCAACGGACACCTGGACTGTGTGACCATCCTCCTGGAAGCTGGAGCTGACCCCAACGGCAGCCGCCACCACCGCAGCACTCCCGTCTATCACGCTGCACGGGTAGGCAGGGTGGACATACTCCAAGAGCTCATCAGgttccATGCCGACGTGGATGTGGACCACCAGCTGGGCGCCAGGCCCCCGTTTGGTGCGGCCCGCACCCTCACCACACTGGTGGTGTGCCCGCTCTACATCAGCGCCGCCTACCGCCACCTCCACTGCTTCAGCCTGCTCCTGGCGGCCGGCGCCCAGCCGGACTACAACTACAACGGACCAGTGAGCCGCGAAGCGCTAGCAAAGGGTTTGGCCTCCTGCCTGCTGGATGCGGTGCTGAGACACGGCTGTGAGGCGGCGTTCGTCAGACTGCTGCTAGACCACGGTGCCGAGCCCAGCCTGGTACCCTGGGAGCAGCCCCACCGAGAGGGAGCGACCGCCGGGGGCCGAGAGAGGGTTGACCCCGAAGCCCTGCAGCTCTACTTGGAGGCCAGGAGATGTCCTCGTAGGCTGACCTACCAATGTCGGATCAGTATTAGGAAAGTGATGGGGAAGCATCGGCTAAAACACATCCCATCTCTACCGCTCCCGGACCCCATTCAGAACTTCCTGCTTCACCAGAACTGACTCTGGCAGGCCTTGCCTTTGATTATCGTTATGCTATTATGAACAGTGACGGACTTACCATTAGGCAGAAGAGGCAATTGCCTCAGGCTTCACATCATAATCAAGGGGCCTCATGAGCTGGGCATAATTTAAACAAATAAAACTAGTCATCTTTTTGTTTATTTCTCAGCTTGGGCTGTTGAGGCCCCTTGATTTCTCAGCTTGGCCCCTTTATTTCTCAGCTTGAGCtgttgagccccccccccccattctctgCTCAAAGGCAGGACTGCTCAGTAGGTTGGTTCAGCAGCAGCAAAATCTGCAGGAAGCTTCAAAGTTGCAAACGAAATGGGGAAGGGTTTCTTTGCCTGGTAACATGGTTGTCAAAAATACCTCCCAAAAAGTCAATGAATCTATATAGCTGAAGAATAATAGATCAATAATTTATTTCTATACAAATACACTACGTGtacgaaacattaggaacaccatctCTTTCCATGAGataggctgaccaggtgaatccaggtgaaagctatgaccctATATTGATGTCattttttaaatccacttcaaacagtgtagatgaagggcaggagatgggttaaaaaaaatacttttacaCCTTGGGACATGGattgtgaatgggcaagacaaaagatggaAGTGTCTTTGGGGGGTATGGTAATGTAGTtgatgccaggcgcaccggtctgagtgtatcaagaactgcaacgctgctgggttttactcgctcaacagtttcccatgtgtatcaagaatacacatgggaaacacccaaaggacacccagccaacttgacacaactgtgggaagcattggaatcaacatggtccagcatccctgtggaatgctttcgacaccatgtagagtccatgccctcaCGAATTGAGGCTactctgagggcaaaagggggtgcaactcaatattaggaaggtgttcctaatgttttgtacactcagtgtacagtgcATCAGAAACGTTGTTTATTGCTTGTTTGCTGTGACAAAGCCTCCATTCTCTGTATGAGTCGGTATGAGTTGCTTCTTGACTTATTTGCATACCTTCCACATAATTGCAATAATtccaaaaacatatttattttctattttctctGTATTAGGGCTTTCTGTACCACCTACAAAGTGATCTGCAACTAAAGCAATGTCTGTTTC
>TU2044934
AGGACTGCTCAGTAGGTTGGTTCAGCAGCAGCAAAATCTGCAGGAAGCTTCAAAGTTGCAAACGAAATGGGGAAGGGTTTCTTTGCCTGGTAACATGGTTGTCAAAAATACCTCCCAAAAAGTCAATGAATCTATATAGCTGAAGAATAATAGATCAATAATTTATTTCTATACAAATACACTACGTGtacgaaacattaggaacaccatctCTTTCCATGAGataggctgaccaggtgaatccaggtgaaagctatgaccctATATTGATGTCattttttaaatccacttcaaacagtgtagatgaagggcaggagatgggttaaaaaaaatacttttacaCCTTGGGACATGGattgtgaatgggcaagacaaaagatggaAGTGTCTTTGGGGGGTATGGTAATGTAGTtgatgccaggcgcaccggtctgagtgtatcaagaactgcaacgctgctgggttttactcgctcaacagtttcccatgtgtatcaagaatacacatgggaaacacccaaaggacacccagccaacttgacacaactgtgggaagcattggaatcaacatggtccagcatccctgtggaatgctttcgacaccatgtagagtccatgccctcaCGAATTGAGGCTactctgagggcaaaagggggtgcaactcaatattaggaaggtgttcctaatgttttgtacactcagtgtacagtgcATCAGAAACGTTGTTTATTGCTTGTTTGCTGTGACAAAGCCTCCATTCTCTGTATGAGTCGGTATGAGTTGCTTCTTGACTTATTTGCATACCTTCCACATAATTGCAATAATtccaaaaacatatttattttctattttctctGTATTAGGGCTTTCTGTACCACCTACAAAGTGATCTGCAACTAAAGCAATGTCTGTTTCCCCCTTCTTCCCGTCTTTTTGGAGAACAAGAGAGCGCT
>TU2044936
AGGACTGCTCAGTAGGTTGGTTCAGCAGCAGCAAAATCTGCAGGAAGCTTCAAAGTTGCAAACGAAATGGGGAAGGGTTTCTTTGCCTGGTAACATGGTTGTCAAAAATACCTCCCAAAAAGTCAATGAATCTATATAGCTGAAGAATAATAGATCAATAATTTATTTCTATACAAATACACTACGTGtacgaaacattaggaacaccatctCTTTCCATGAGataggctgaccaggtgaatccaggtgaaagctatgaccctATATTGATGTCattttttaaatccacttcaaacagtgtagatgaagggcaggagatgggttaaaaaaaatacttttacaCCTTGGGACATGGattgtgaatgggcaagacaaaagatggaAGTGTCTTTGGGGGGTATGGTAATGTAGTtgatgccaggcgcaccggtctgagtgtatcaagaactgcaacgctgctgggttttactcgctcaacagtttcccatgtgtatcaagaatacacatgggaaacacccaaaggacacccagccaacttgacacaactgtgggaagcattggaatcaacatggtccagcatccctgtggaatgctttcgacaccatgtagagtccatgccctcaCGAATTGAGGCTactctgagggcaaaagggggtgcaactcaatattaggaaggtgttcctaatgttttgtacactcagtgtacagtgcATCAGAAACGTTGTTTATTGCTTGTTTGCTGTGACAAAGCCTCCATTCTCTGTATGAGTCGGTATGAGTTGCTTCTTGACTTATTTGCATACCTTCCACATAATTGCAATAATtccaaaaacatatttattttctattttctctGTATTAGGGCTTTCTGTACCACCTACAAAGTGATCTGCAACTAAAGCAATGTCTGTTTCCC
>TU2044933
GGGTTTCTTTGCCTGGTAACATGGTTGTCAAAAATACCTCCCAAAAAGTCAATGAATCTATATAGCTGAAGAATAATAGATCAATAATTTATTTCTATACAAATACACTACGTGtacgaaacattaggaacaccatctCTTTCCATGAGataggctgaccaggtgaatccaggtgaaagctatgaccctATATTGATGTCattttttaaatccacttcaaacagtgtagatgaagggcaggagatgggttaaaaaaaatacttttacaCCTTGGGACATGGattgtgaatgggcaagacaaaagatggaAGTGTCTTTGGGGGGTATGGTAATGTAGTtgatgccaggcgcaccggtctgagtgtatcaagaactgcaacgctgctgggttttactcgctcaacagtttcccatgtgtatcaagaatacacatgggaaacacccaaaggacacccagccaacttgacacaactgtgggaagcattggaatcaacatggtccagcatccctgtggaatgctttcgacaccatgtagagtccatgccctcaCGAATTGAGGCTactctgagggcaaaagggggtgcaactcaatattaggaaggtgttcctaatgttttgtacactcagtgtacagtgcATCAGAAACGTTGTTTATTGCTTGTTTGCTGTGACAAAGCCTCCATTCTCTGTATGAGTCGGTATGAGTTGCTTCTTGACTTATTTGCATACCTTCCACATAATTGCAATAATtccaaaaacatatttattttctattttctctGTATTAGGGCTTTCTGTACCACCTACAAAGTGATCTGCAACTAAAGCAATGTCTGTTTCCC
>TU2044935
GGGTTTCTTTGCCTGGTAACATGGTTGTCAAAAATACCTCCCAAAAAGTCAATGAATCTATATAGCTGAAGAATAATAGATCAATAATTTATTTCTATACAAATACACTACGTGtacgaaacattaggaacaccatctCTTTCCATGAGataggctgaccaggtgaatccaggtgaaagctatgaccctATATTGATGTCattttttaaatccacttcaaacagtgtagatgaagggcaggagatgggttaaaaaaaatacttttacaCCTTGGGACATGGattgtgaatgggcaagacaaaagatggaAGTGTCTTTGGGGGGTATGGTAATGTAGTtgatgccaggcgcaccggtctgagtgtatcaagaactgcaacgctgctgggttttactcgctcaacagtttcccatgtgtatcaagaatacacatgggaaacacccaaaggacacccagccaacttgacacaactgtgggaagcattggaatcaacatggtccagcatccctgtggaatgctttcgacaccatgtagagtccatgccctcaCGAATTGAGGCTactctgagggcaaaagggggtgcaactcaatattaggaaggtgttcctaatgttttgtacactcagtgtacagtgcATCAGAAACGTTGTTTATTGCTTGTTTGCTGTGACAAAGCCTCCATTCTCTGTATGAGTCGGTATGAGTTGCTTCTTGACTTATTTGCATACCTTCCACATAATTGCAATAATtccaaaaacatatttattttctattttctctGTATTAGGGCTTTCTGTACCACCTACAAAGTGATCTGCAACTAAAGCAATGTCTGTTTCCCCCTTCTTCCCGTCTTTTTGGAGAACAAGAGAGCGCTATCATTTATCTTTCTCACACCCGCTTCCAATTTCATTTTCTTTGGAAAGCACGTCTTTGCCT

Function

symbol description
asb1 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Predicted to be part of ubiquitin ligase complex. Orthologous to human ASB1 (ankyrin repeat and SOCS box containing 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958947.1 False 2022 mRNA 0.52 6 20269646 20276866
XM_036958948.1 False 2515 mRNA 0.51 5 20269646 20281852
TU2044934 False 952 lncRNA 0.42 1 20280939 20281890
TU2044936 False 916 lncRNA 0.42 1 20280939 20281854
TU2044933 False 842 TUCP 0.41 1 20281013 20281854
TU2044935 True 940 lncRNA 0.41 1 20281013 20281952

Neighbor

gene id symbol gene type direction distance location
traf3ip1 traf3ip1 coding upstream 10373 20206402 ~ 20259273 (+)
adarb1b LOC106581860 coding upstream 93986 19997839 ~ 20175660 (+)
LOC110502116 NA coding upstream 396949 19872147 ~ 19872697 (+)
zgc:66484 LOC106581857 coding upstream 525697 19734287 ~ 19743949 (+)
LOC110501573 LOC106586130 coding upstream 542778 19689016 ~ 19726868 (+)
LOC110502064 LOC106581735 coding downstream 56276 20338128 ~ 20343956 (+)
twist2 twist2 coding downstream 77788 20359640 ~ 20365532 (+)
LOC110502066 NA coding downstream 662072 20943924 ~ 20945171 (+)
LOC110501589 LOC106581698 coding downstream 1346692 21628544 ~ 21667403 (+)
LOC110501590 LOC106581697 coding downstream 1387664 21669516 ~ 21701293 (+)
G1786321 NA non-coding upstream 4533 20264499 ~ 20265113 (+)
G1786282 NA non-coding upstream 81845 20187583 ~ 20187801 (+)
G1786280 NA non-coding upstream 85480 20183899 ~ 20184166 (+)
G1786167 NA non-coding upstream 272436 19996680 ~ 19997210 (+)
G1786007 NA non-coding upstream 500814 19768473 ~ 19768832 (+)
G1786329 NA non-coding downstream 346 20282198 ~ 20282420 (+)
G1786331 NA non-coding downstream 5873 20287725 ~ 20288393 (+)
G1786343 NA non-coding downstream 35627 20317479 ~ 20318069 (+)
G1786354 NA non-coding downstream 62948 20344800 ~ 20345227 (+)
G1786870 NA non-coding downstream 107599 20389451 ~ 20456014 (+)
G1785947 znf142 other upstream 607720 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 641886 19603742 ~ 19627954 (+)
ybey ybey other upstream 697207 19570580 ~ 19572946 (+)
LOC110501548 LOC106586143 other upstream 1071932 19186076 ~ 19197714 (+)
G1784476 asic4 other upstream 1502506 18766319 ~ 18767140 (+)
G1786330 NA other downstream 1329 20283181 ~ 20284571 (+)
G1787719 NA other downstream 852413 21134265 ~ 21136477 (+)
G1788811 LOC106581691 other downstream 1713512 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 1716621 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 3134241 23416093 ~ 23432383 (+)

Expression


Co-expression Network