LOC110502064 (LOC106581735)


Basic Information

Item Value
gene id LOC110502064
gene name LOC106581735
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20338128 ~ 20343956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579956.2
TCACACAGTCCAGAGATTACAAGTGACGTGTAGCGTACAATCAGACGGTCCTCACAAGCACTTTATTTTGAACCAGGGACTTTTAAACTAGGCACCGATTTCGTGTAGCGGGCTACACGTTTTCTCCTGCCGGGTAAAAACAGTTTATTGAATTGAACAATAATACTTTAAAATGGAAGATGTATTATTTGACTTGGATCAAGATGGCACTACAGACTTTGATTTCTGGGGCCAAATGGACCTTAACTTCCAGTTCCAGGCCCAGTTGGACAGTCTACTCGTTGACTGCACCACGGTCACCGGCCAGCTTTCGCCATGGTCCTCGTTCGGCGGCCAGTCCATGTTCCCGGACGCGCAGCTGACCTTCACAGACCTGGACTCGCAGTCTCCCGGCCTTGGCGCTGGTGCTGAAGTGGACAGCTCCTCGGCGGACGAGCCCCACGAGATGAGCAAGCGCAGGCCGCTGCGGTTTGTGCCCCATCACCCGTACAAGATCCAGCGACACGCCGCTAATATccgggagaggaagaggatgctgaGTATCAATTCGGCGTTCGAAGAGCTGCGGTGCCACGTGCCCACCTTTCCTTACGAAAAGCGCCTGTCCAAGATTGATACCCTGAGACTCGCCATTGCCTACATTGCCCTCTTGAGAGAAATATTGATATCCGGCTGCGACCCCAAGTCATATTTGGATGAATGCATGAAGAATGGTTACAAGAATCAAACCAATGCAATATGGAACACAAGTGATCTGACAGCCCGGCTCTCCTGGATAAAGTGGGATTAACTCAGGATGGAGCGACCCAAGtacgtgtggggggggggggggggggggggggggcagggattTACACCCTCTTCTCTGTCCGTGTCAATGGCAGCATCACATCAGGGGCTGAGTGACATCTGCAGACTTCTCACCAGGTCGTGCACCTCTCTCTGCAGCCATCCGCGCCCCTCACAGCTTTTAATATTTGAATGTGTTGTGGATTGGTAATTGAGTGTCAGTGTTTCTCTGGAGTTGCCCGTTGTTTTACAGTGAATGGGGGACCGGGGGCAGACTCAAGCCCATGGGGATGGTGCTTGTCACAGGGGAGCGAAGCAGGCTGGCATGGGACTGAATTAACcttggtaaaaaaacaaaaaaaagaattGTATGGAGTATGATACTGAAGTGTTCATTTGAAACCTTTTGCTGTTGTTCATTAGACACTGTTACAAGGGACTTGATAATGTAAATTAGACTGTGTGACACCCACATTTCAGTAAGTTAATTTATCCCAATGAATTAatcattgtatttattttaattcATGTATTTATTCGtcaatttgtttatttatttattattttgtattgaTAATTTTGGTTCTTTTgtattattttgatgtattaacATTCCTTTTTTATTAATGATTTATTCAACTTTTTACATTTATGATTGCTAGTTGTTTATATTTAATCAATTATGTATTGTCATCAAATGGACCATTTTGATGTTCATACGACTTATTATGAAGATACCTGTATATTGTTTTTCTAGTGCTGGTGAGTATTGAGGAAAATCTGTAAAGCTGGGTTGGACTGGGGAATGGATTTGTGCTTGATGGCAAATCAGGGAATTCCTAACACAATGAAATTAGGCAGTATGTTTTCCAGATTATTCCCCCCATGCTGACTGTATTCCTCTATGTTGGTTAGGAGTTTGAAACGAAGATGGAATGAATCCAACCAACCTGTGTGGATTTGTAATGGTTCCCGAAGCCCTGTTGGTGACATTGAATCTGCAGCTGTGGTGTCCAGGCCCACTGTAGAGACCTTTAGCTTtccccctgcacacacacagcagcatttGGTTTAGCCATTTCCCTTATGGTTAAAATACGTACTCAGGTGACTCCACATTCTGTTCCCACTTAGCTGGCTCTATTCACTGGGATCAGCTTAGCAAGGTCTCACTGACACTGTCACTGTAAATTACTCCCAATGTCATCATGTTATCCATGGATGTCAATGTAGTGTCTGTCTACTCATACTACGTATGGTTTAGTCAGAGACGTAGTAAACGGAGACAGAAGGCGTATACCCAGTGCACacactccctctgttctcctgcacgtGTACTTTTAGTGCTGCTAATGACCCTCACTGGAAACATTTTACGCAGGAACACACAGCAATATGGGAAGTCCATTTGGGTGGGGGATACTTAAGGGGGGATGGCGGTGAGGTATCTCAGAGGACCCTAAAATTGGAGTATGGGAGTGTCACCCctcatacaggtgtgtgtgtgtgtttgtgtgtcacctGTGGATCCATTCCCACCACCTCCTTCAGGGTTACACCCTTTCTTTAACCACCACCTTACACCACTCCCCTCCATGcctcccccctctaccccccaccccatGTTACATAGACAGGGCAGGTGTTGTCTTTACTCCCCCTTTgctctgtagcctactgtacacctGTTTTACTTGACTGTGGATGTAAGTAAGTGCTTTACACTATGGACTGTGAAATAAATAACTTTGTTAGTTTCTATGGTTGTTTACTCAACTTATATTGAGGATCATTCATCACAACATCAACAGCCATTCATCTAATGTCGCAATTCATGTAATGTACTTGATTAAACAAGTAATGTGCTTGATTATCTACTGATCTTGGAGGTAGCCTATAATGAATTACTTTCTGACACCTTTGACTGTAATGCTCGTTGACCACTACCTCCCTCTATTGGAAACTATTGGATAGGCATTGAGTGGTGAGGACTGGGGAGCAACCGAACATGGAACAATCTTTCAATTACAGGACAGTCACACTTTTATCGATTACGGTAGGAAAAATATGTAGAAATTCAGAAAAtgtaaatcacacacacaatcgAGCCTTTTCCTGCGGTCTTTAAAAAAATGGATGTTTTATTTGCCCATCTTTGGGTAAcaactttatttttcatttttgttTGTACAGGTATTTTGTTACATATACAATTTACATACATGGTTGGCCTACTTTTATACACAGTATTGCATAGCATATAGTTTTTTGAGATACACATTACATAATAGTGTAGAAGGCCTACTCCAGCCTTTTACTCTGAAGACTAGGCTAGAAAATAGGTCTACTTACTCATGATCTCGGTCATTAAATGTAAGGGGAAATCGGCTAATTGTGATTATTGGACAAAGAGAAATGATAACTTGATGGACATTCAAATTCTAACCTATCAGTGTTTTCTGTACTGAACTTAAAAAATAAAGTGATCATAAACCTCTAAGGGCTCTGTTCAATCTGTATCCCTGAAGTGTTACAGATAGCGAGCTgcaaatgtaaaggtaatttcctatTAAGGCCTACAGCTGCAGCGTTAACCTTGAATGCAATCTCTGCGAAGGcggggaacattgcctttaattttcaatcacgctgtaacgcTGTAATTTCCACGATACGGATCGAATAGAGCCCTAAGTTACTAGCTATGACCCTGACCCCAACAGCACGCCTAGCCTAGAATGCCTTTCATATGAGACAAGTGAGCAAAGAGATGGGAAATTCCGAGGTCCACTGCAAACATGTCCAGTCGAGCCTTGTTCACAATCCCCATAAGCACTCCGTTACGGATGTCCACaacagagtggaatcac

Function

NR:

description
transcription factor 21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579956.2 True 3659 mRNA 0.44 2 20338128 20343956

Neighbor

gene id symbol gene type direction distance location
asb1 asb1 coding upstream 56276 20269646 ~ 20281952 (+)
traf3ip1 traf3ip1 coding upstream 78855 20206402 ~ 20259273 (+)
adarb1b LOC106581860 coding upstream 162468 19997839 ~ 20175660 (+)
LOC110502116 NA coding upstream 465431 19872147 ~ 19872697 (+)
zgc:66484 LOC106581857 coding upstream 594179 19734287 ~ 19743949 (+)
twist2 twist2 coding downstream 15684 20359640 ~ 20365532 (+)
LOC110502066 NA coding downstream 599968 20943924 ~ 20945171 (+)
LOC110501589 LOC106581698 coding downstream 1284588 21628544 ~ 21667403 (+)
LOC110501590 LOC106581697 coding downstream 1325560 21669516 ~ 21701293 (+)
c22h2orf69 cssa21h2orf69 coding downstream 1585406 21929362 ~ 21934705 (+)
G1786343 NA non-coding upstream 20059 20317479 ~ 20318069 (+)
G1786331 NA non-coding upstream 49735 20287725 ~ 20288393 (+)
G1786329 NA non-coding upstream 55708 20282198 ~ 20282420 (+)
G1786321 NA non-coding upstream 73015 20264499 ~ 20265113 (+)
G1786354 NA non-coding downstream 844 20344800 ~ 20345227 (+)
G1786870 NA non-coding downstream 45495 20389451 ~ 20456014 (+)
G1786866 NA non-coding downstream 55244 20399200 ~ 20401362 (+)
G1787075 NA non-coding downstream 333375 20677331 ~ 20677534 (+)
G1787081 NA non-coding downstream 339357 20683313 ~ 20683528 (+)
G1786330 NA other upstream 53557 20283181 ~ 20284571 (+)
G1785947 znf142 other upstream 676202 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 710368 19603742 ~ 19627954 (+)
ybey ybey other upstream 765689 19570580 ~ 19572946 (+)
G1787719 NA other downstream 790309 21134265 ~ 21136477 (+)
G1788811 LOC106581691 other downstream 1651408 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 1654517 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 3072137 23416093 ~ 23432383 (+)
G1790805 NA other downstream 3774606 24118562 ~ 24119475 (+)

Expression


Co-expression Network