LOC100136257 (LOC100136257)


Basic Information

Item Value
gene id LOC100136257
gene name LOC100136257
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20765912 ~ 20777157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124521.3
AGAAGAAGAGTTCCACGTGTGTGAGTGCTCAGCTGCAATCATGGCAGATCTTCAGATGAGGCTTCTTCGgcagaaaatccagaaaagaaGCGTAAAGAACAAAGAGCGAAAGCTACTTCAGAAACGGAAACAGGAGAAGGATAATGACGACGCAAACGGACTTCCAGAGGAGTGTTGTGATGAAAAGAGTCAGGTGGCCACAGCCATATCAAAGCCACAGAATGCCAAACCCACGAATAAGCAGCAAAAAGAGAAGAATGGGCCGGCAGAGGTGGACACAGAACATTTTgtcaagaagaaaaataaaagaAAGCTCAACACCACTGAACAGCCAGGTGTGAAAAAAGCGAAGAAGGAGGAAGATGTGACAGAGGAGGATGCTGATCAGACCACAGACAAAGCCACACAGCCTCTTGAACAGGGAGATGAGGGGGGGGATGATGAAGAGGAAAGTGAGAATGGGGCGGAAGGAGAAAAGTTTGAGGATACTGAGGAGGAAGATGAACCAAAGCTCCCATCTGGCTTGACAGGTGCGTTTGAGGACACGTCGTTTGCCTCTCTAGCGCCTCTGGTGAGTGAGAACACTCTAAAGGGTGTGAAGGAGATGGGCTTTGAGCACATGACTGAGATCCAACACAAAAGCATACAGCCCCTATTGGAGGGAAGAGATATCCTGGCTGCTGCTAAGACTGGCAGTGGTAAAACCCTGGCCTTCCTCATCCCTTCCATCGAGCTCATCTACAAACTTAAGTTCATGCCCAGAAATGGTACAGGCGTGGTGATCTTGTCCCCAACGCGCGAGTTGGCCATGCAGACGTACGGCGTGATGAAGGAGCTGATGACCCACCACGTGCACACCTTCGGCCTGATCATGGGCGGCAGCAACCGCACGGCCGAGGCCCAGAGGCTGGCCAATGGCGTCAACATCCTGGTGGCCACGCCCGGGAGACTGCTTGACCACCTCCAGAATACTGCTGGCTTCATGTATAAGAACCTCCAGTGTCTGATTATTGACGAAGCTGACCGTATCCTGGAGGTCGGCTTCGAGGAGGAGCTGAAGCAGATCATCAAACTCCTGCCAAAGCGGAGGCAGACGATGCTGTTCTCGGCCACCCAGACCCGTAAGGTGGAGGACCTGGCCCGTATTTCCCTGAAGAAGGAGCCCCTCTACGTGGGTGTGGACGACAACAAGGACAATGCAACCGTGGACGGCCTGGAGCAGGGCTATGTGGTGTGTCCCTCAGAGAAGCGCTTCATGCTGCTCTTCACCTTCCTGAAGAAGAACCGCAAGAAGAAGCTGATGGTGTTCTTCTCCTCCTGCATGTCGGTCAAGTTCCACTACGAGCTGCTCAACTACATTGACCTGCCTGTCATGGCCATCCACGGGAAGCAAAAGCAGACCAAGCGTACCACCACCTTCTTCCAGTTCTGTAACGCCGACTCAGGCATCCTGCTGTGTACAGATGTGGCGGCCAGAGGCCTGGACATCCCTGAGGTGGACTGGATTGTCCAATATGACCCCCCAGATGACCCCAAGGAATATATCCACAGGGTGGGCAGAACGGCTCGCGGGATCAACGGCATAGGCCATGCCCTCCTAATCCTCAGGCCAGAGGAGCTGGGTTTCCTGCGCTTCCTCAAACAAGCCAAGGTTCCTTTGAGTGAGTTTGAATTCTCTTGGGCAAAGATCTCTGATATCCAGGGTCAGCTGAATAAGCTGATTGAGAAGAACTACTACCTGCACAAGTCAGCCCAGGAGGCCTACAAGTCCTATGTGCGGGCGTACGACTCTCATTCCCTCAAAGCGATCTACAGTGTCAACACGCTCAACCTCCCCATGGTGGCACAGTCTTTCGGCTTTACTGTGCCTCCCTACGTCGACCTCAACGTTCACAGCAAAGGAGGACTGAAGATGACGAAGAGGGGTGGAGGTGGCGGCTTCGGCTACCAGAAGGGCAAGCCCGCTCACAAAGCCAAAATCTTCAAGCACGTCAACAAAGGCAAGGGGGACAAGAGGCAATTCTCACGCTGACCTGCGGTCCTTGGGGGGCCActacaaaatggcttcctggCCTGGACGCACTCCCCTCTCAATCTCTATCTTATCTAGAGACCCTGTAATGGGCGTCATGTCTCGCTCCCTAATTGTATGTGTTAGAACAGTCTCTTGCTACCTGTCGGAGGCCCAATTTCCGCTTCAATGCCTCCACCTGTCTTTCTGGACAGGTATTTTGTATCTAGTGACAGGGCTCTCTGGGCTAGTAACTGTTGAGACAGCCCCTGCAGTCCTTTACTCACAGCAGATGTGGATTTTACCTTGGACTGTCTTTGATTTAATTATACAGAACTGTACATTGCTAAATGTATTTCCATGATTTTCATCCTTCTACTTTACTGGCTAATTAAAACGTTTATACACCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124521.3 True 2421 mRNA 0.52 14 20765912 20777157

Neighbor

gene id symbol gene type direction distance location
LOC110501586 LOC106581869 coding downstream 25958 20730910 ~ 20739954 (-)
LOC118943627 NA coding downstream 73598 20690516 ~ 20692314 (-)
hdac4 hdac4 coding downstream 104934 20379465 ~ 20660978 (-)
agr1 LOC106581734 coding downstream 562048 20195712 ~ 20203864 (-)
LOC118943631 NA coding downstream 975989 19788794 ~ 19789923 (-)
LOC110501587 LOC106586113 coding upstream 365927 21143084 ~ 21447203 (-)
LOC110501588 LOC106581699 coding upstream 795407 21572564 ~ 21590999 (-)
LOC110501591 LOC106581664 coding upstream 931724 21708881 ~ 21766231 (-)
LOC110501594 LOC106581696 coding upstream 1011271 21788428 ~ 21913721 (-)
ftcdnl1 LOC106581695 coding upstream 1145643 21922800 ~ 21936414 (-)
G1787259 NA non-coding downstream 232913 20524773 ~ 20532999 (-)
G1787208 NA non-coding downstream 365799 20398852 ~ 20400113 (-)
G1786846 NA non-coding downstream 411835 20353747 ~ 20354077 (-)
G1786834 NA non-coding downstream 419280 20346146 ~ 20346632 (-)
G1786815 NA non-coding downstream 440977 20324712 ~ 20324935 (-)
G1787982 NA non-coding upstream 321156 21098313 ~ 21122358 (-)
G1788010 NA non-coding upstream 359386 21136543 ~ 21136749 (-)
G1788013 NA non-coding upstream 361172 21138329 ~ 21139127 (-)
G1788014 NA non-coding upstream 363901 21141058 ~ 21141545 (-)
G1788199 NA non-coding upstream 613055 21390212 ~ 21395471 (-)
G1787166 NA other downstream 309929 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 419898 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 1106812 19655763 ~ 19666201 (-)
G1785753 NA other downstream 1444053 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 1586728 19175567 ~ 19179266 (-)
G1789581 NA other upstream 1640973 22418130 ~ 22419498 (-)
G1790280 NA other upstream 2387324 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 2655837 23368423 ~ 23460589 (-)
G1791405 NA other upstream 3549572 24326729 ~ 24327127 (-)

Expression


Co-expression Network