LOC110502066


Basic Information

Item Value
gene id LOC110502066
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20943924 ~ 20945171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502066
ATGAGCCATAGCCCAGAAAGGATGTCATCTTCCCGCTGCCACTTTGAGGACATCAGCAGCAGCTCAACATCCTACCAGGTCAGGGTGTCCAGCCCTTCCCCCACCCGACGAGATGCCCGTACCCGATCCACCATCTTCACCCACGGTGGTTCAAGAGGTGGCACAATGGCCCGAAGGACCATGTCCTCCACACAAAGATCTGGCGTGGCTGGTGGGACAATGTGTGCTGGTATGGAGGCACATGCAGCGTTGAGAGACAGGAGATGGTCGTCCTTAACGACAGGCTGGCTGTTTACATCGACAAAGTTCACTCATTGGAGCAGCAGAACAAGCAGTTGGAGATGGAGATCGAAGGCCTCCAGAATCGCTTTGTGAAGCCGTCTGGCCTGCGCTTGCTGTACGAGCAGCAACTGAGGGAGCTGATGAAGATCGCAGATAAGATGCGAGTTCAGCAGGGCCTGGCCCTCGCCGATGAGGAGGCCATGGTCGGCCAACTGGAGATGATCAAAACTAAATATGAGGAGGCCCTTGAGAAGAGGAAGGTGGCCGAGCTGGAAATCGAAGCATCCCTTCCGGATGTCGACGCGGCCACCTCTGCACGCTTCGCTTTGGAGAAACAGCTGGAGCAGTTGGAGGTTGAGCTCATGTTTCTCCAGAGGGTGCAGAAACAGGAAATTAAAGAGCTGATGGCTCAGGTCTATTCTGGTCATTCCTCATCCCAGAGCTCCTTCGCCCTCCCTGACCTATTGGCTGCTCtcaaacaaatccaaagtcagtACAATGAAATTGGCTGAAATGGATTCCTGGTACAAATCAAAATTCGAAGACGTTACCAACAAGACGACAAAGCACGTCGACAAAGCACGTCAACAAAGCGTTAGATAAGAAATTACGAGCGCCAGGAAGGATATCCAAAACAAAGAGTGTGACCTGGATGCTCTGAATGACGCTCTGGAAGCAGAGGTCAACAAAGCAACGGAGAGGTACAAGAGGGAACTGGAAGACTTGCAGGCGAGGATCGAGGCCCTGAAGCTTGAGCTGGAAACCACCAAGGAGAAGATTGCTCACCACCTGCGCGAGTACCAGGACCTTCTGGACATCAAGATGGCTCTGGAGATTGAGAACACGACTTACAGGAAGCTGATTGAAGGTGAGGACTTGCAACTCAGCAACATGGTCAAGAACCTGTCTTGGATGAGTGGCAGAATGAGTGCGATTGAGCTCAGAAATAAGCAGTGTTGGGATTAG

Function

NR:

description
PREDICTED: glial fibrillary acidic protein-like isoform X2

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502066 True 1248 mRNA 0.52 1 20943924 20945171

Neighbor

gene id symbol gene type direction distance location
twist2 twist2 coding upstream 578392 20359640 ~ 20365532 (+)
LOC110502064 LOC106581735 coding upstream 599968 20338128 ~ 20343956 (+)
asb1 asb1 coding upstream 662072 20269646 ~ 20281952 (+)
traf3ip1 traf3ip1 coding upstream 684651 20206402 ~ 20259273 (+)
adarb1b LOC106581860 coding upstream 768264 19997839 ~ 20175660 (+)
LOC110501589 LOC106581698 coding downstream 683373 21628544 ~ 21667403 (+)
LOC110501590 LOC106581697 coding downstream 724345 21669516 ~ 21701293 (+)
c22h2orf69 cssa21h2orf69 coding downstream 984191 21929362 ~ 21934705 (+)
esyt3 LOC106581688 coding downstream 1090201 22035372 ~ 22076238 (+)
LOC118943635 NA coding downstream 1131206 22076377 ~ 22079829 (+)
G1787128 LOC106581870 non-coding upstream 170133 20765912 ~ 20773791 (+)
G1787121 NA non-coding upstream 186243 20755572 ~ 20757681 (+)
G1787114 NA non-coding upstream 197011 20746514 ~ 20746913 (+)
G1787081 NA non-coding upstream 260396 20683313 ~ 20683528 (+)
G1787075 NA non-coding upstream 266390 20677331 ~ 20677534 (+)
G1787486 NA non-coding downstream 23275 20968446 ~ 20988849 (+)
G1787608 NA non-coding downstream 53595 20998766 ~ 20999045 (+)
G1787618 NA non-coding downstream 61033 21006204 ~ 21006445 (+)
G1787720 NA non-coding downstream 191760 21136931 ~ 21137259 (+)
G1787721 NA non-coding downstream 192284 21137455 ~ 21137953 (+)
G1786330 NA other upstream 659353 20283181 ~ 20284571 (+)
G1785947 znf142 other upstream 1281998 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 1316164 19603742 ~ 19627954 (+)
ybey ybey other upstream 1371485 19570580 ~ 19572946 (+)
G1787719 NA other downstream 189094 21134265 ~ 21136477 (+)
G1788811 LOC106581691 other downstream 1050193 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 1053302 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 2470922 23416093 ~ 23432383 (+)
G1790805 NA other downstream 3173391 24118562 ~ 24119475 (+)

Expression


Co-expression Network