LOC110501588 (LOC106581699)


Basic Information

Item Value
gene id LOC110501588
gene name LOC106581699
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21572564 ~ 21590999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579261.2
CAAGCGCTCCCCGGCGTCAGCCATCTTGCCTGCCCTAGACCGATTGCGGAAGTAACGTTAGAAACTGTACTTTGTGCAGGTTCAGGTTTCCGCCTGTGGACGGTTTGCAATATCCTCCAGCAGACACAGACAGCTATCGATTAACAGAAAACATTTGTGATTACCAGAAGCACACGAGATGGCAGGACGATTACCGGCGTGTGTTGTCGACTGCGGTACAGGATACACTAAGCTGGGGTATGCAGGGAACACAGAGCCACAGTTCATTGTTCCGTCATGTATTGCAATCAAAGAGTCGGCCAAGGTTGGATCAAGGACGGTCAAGGGGGTGGACGACCTGGACTTCTTCATCGGAGATGAGGGGATAGACAAGCCCAATTATGCCACAAAGTGGCCCATCCGTCATGGCATTGTCGAGGACTGGGACCTGATGGAGAGGTTCATGGAACAGGTGATCTTCAAGTACCTGAGGGCGGAGCCTGAGGACCACTACTTTCTGTTGACAGAGCCTCCTCTGAACACACCAGAGAACCGAGAGTATACAGCAGAGATCATGTTTGAGTCCTTCAACGTCCCAGGGCTCTACATTGCAGTGCAGGCTGTCCTGGCGCTGGCTGCCTCCTGGACATCCAGACAGGTGGGGGAGAGGACACTGACGGGGACGGTCATCGACAGCGGAGACGGAGTCACCCACGTTATCCCTGTGGCTGAGGGCTACGTCATCGGCAGCTGTATAAAGCACATCCCCATCGCGGGTCGTGACATCACCTACTTCACTCAGCAGCTTCTGAGGGAGCGGGAGGTGGGCATCCCCCCAGAGCAGTCCCTGGAAACGGCCAAGGCAGTCAAGGAGCGTTTCAGCTACGTGTGTCCTGACCTAGTGAAAGAGTTCAACAAGTACGACACGGATGGCTCCAAGTGGATCAAGCAGTACACTGGAATTAACAACATCAGCAAGAAGGAGTTCACTGTCGACGTGGGCTACGAGCGCTTCCTTGGCCCTGAGATCTTCTTCCACCCAGAGTTTGCCAATCCTGACTTCACCCAGCCCATCTCCGAAGTTGTGGACGAGGTTATCCAGAACTGCCCCATTGATGTCAGACGTCCTCTTTACAAGAACATTGTCCTGTCAGGCGGCTCCACCATGTTCAGGGACTTTGGGCGGCGCCTGCAGAGGGACCTGAAGAGGACTGTGGACGCTAGGCTGAAGATGAGTGAGGAGCTGAGTGGGGGCAAGCTCAAGCCCAAACCAATTGATGTGCAAGTCATCACTCATCATATGCAGAGATATGCAGTGTGGTTCGGAGGATCCATGTTAGCCTCAACTCCTGAGTTCTACCAGGTATGCCACACCAAAAAGGACTATGAGGAGATTGGGCCTAGCATCTGTCGTCACAACCCTGTGTTCGGAGTCATGTCTTAACTGTGGCCCTCCAATATCTAATGGTTAGATGGGTTGGGTTGGGAGAATAGGGGGTGGTCATGGGAGGGGGATGCCGCGGGTCAGGGTTGGTGCGTTTGCGATTTTTGATTGCTCGTTCATTGTACAGAACGAGAAGGCGATACAGAATTTTaaaaaaggaaaaaaagagaCCAGACCAAACACAGTCCGGCTGGAAAATttattggaaatgttttttgttttttttgtttcattttccAAAATGAGGGAAATATGGTTTCTAAACCAAAACAATAAAAGATCATTTCCGGATCTGTCGAGCAACATACTGAAAGCGGGATGGTGGTGGGGGATTTGATGGTGACGATGATGacgacaataacattgatgatgATAATAAAACCAGAAGTCATAAAACATTATTTATGTTTGTAGAACTTGAGTCCAGGGAATATCTGGCAACTCAAGCTATTGTTGATCATGGCAAGGTTATAGAACATATTAATGTCTcctttacatattttttttttctgctTCAAATGCACTTCACTTTATGTACCACAGCAAGAGCTTGTTTATATTTCATACAAAGGTTTTTTATATGTAAAACTTGGGATATCCGGGGAGAAAAATGTAAATGCATACCAGTATCAGCAAGTGACCATTTTAACCCACAATGCAGCTTTGATACACAGTATTTTTTTAAGTTAGAAAACTTTCTCTCCCTCATTATTCTACCCATGTCTGTCCTTGCTATTTCCCTTTTAATTCTACATTAACACGCCTCTGCTTTTATTTTCGACCATTCCAGATTTCCTCTTCTATATTgcagtgaaagaaagaaaagagaactctatTCATAAAATAATTATGATGACATTGAAAGAGAGTGACTGTAGGACCAGTATTGTTAGCCTTTTCCTTTTTTAAATTAAATGccaaattattaaaaaaaaatgggaTTTGTGTATTTAATGCCTTACAACATTCCAATAAAGGCTCAAATTTGTTTCTCA

Function

NR:

description
PREDICTED: actin-related protein 3-like

GO: NA

KEGG:

id description
K18584 ACTR3, ARP3; actin-related protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579261.2 True 2418 mRNA 0.46 12 21572564 21590999

Neighbor

gene id symbol gene type direction distance location
LOC110501587 LOC106586113 coding downstream 125361 21143084 ~ 21447203 (-)
LOC100136257 LOC100136257 coding downstream 795407 20765912 ~ 20777157 (-)
LOC110501586 LOC106581869 coding downstream 832610 20730910 ~ 20739954 (-)
LOC118943627 NA coding downstream 880250 20690516 ~ 20692314 (-)
hdac4 hdac4 coding downstream 911586 20379465 ~ 20660978 (-)
LOC110501591 LOC106581664 coding upstream 117882 21708881 ~ 21766231 (-)
LOC110501594 LOC106581696 coding upstream 197429 21788428 ~ 21913721 (-)
ftcdnl1 LOC106581695 coding upstream 331801 21922800 ~ 21936414 (-)
stk17b LOC106581692 coding upstream 345515 21936514 ~ 21957704 (-)
hecw2a LOC106581691 coding upstream 378153 21969152 ~ 22021354 (-)
G1788496 NA non-coding downstream 7960 21564334 ~ 21564604 (-)
G1788278 NA non-coding downstream 82174 21490190 ~ 21490390 (-)
G1788277 NA non-coding downstream 83215 21489121 ~ 21489349 (-)
G1788266 NA non-coding downstream 95824 21476524 ~ 21476740 (-)
G1788252 NA non-coding downstream 118945 21453414 ~ 21453619 (-)
G1788570 NA non-coding upstream 73851 21664850 ~ 21668426 (-)
G1788661 NA non-coding upstream 186793 21777792 ~ 21778222 (-)
G1788664 NA non-coding upstream 190442 21781441 ~ 21781669 (-)
G1788854 NA non-coding upstream 192216 21783215 ~ 21785625 (-)
G1788859 NA non-coding upstream 196891 21787890 ~ 21788186 (-)
G1787166 NA other downstream 1116581 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 1226550 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 1913464 19655763 ~ 19666201 (-)
G1785753 NA other downstream 2250705 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 2393380 19175567 ~ 19179266 (-)
G1789581 NA other upstream 827131 22418130 ~ 22419498 (-)
G1790280 NA other upstream 1573482 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 1841995 23368423 ~ 23460589 (-)
G1791405 NA other upstream 2735730 24326729 ~ 24327127 (-)

Expression


Co-expression Network