LOC110501590 (LOC106581697)


Basic Information

Item Value
gene id LOC110501590
gene name LOC106581697
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21669516 ~ 21701293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579265.2
TTTAATGTTTAACTAGTAGGAGGGAGGAGATCAGTGCCTGCTGTCAGAGTGCAGCTTGAAGCATGGTCCAAGCCATGTAAATCCACTTTCTGGACGAAGAACTGCACGGACGACCTATGGCTGCCTACAAAACTCAAGTCCTGCCACTTTGAGAGCTTATTCACAGGGGTGTTTCTCGGAAAACCTGAAACGAGGAAGAAACTTTCTGGTATGGCTAATGTGATCCTAATATTCTTCTGTGATATAGTTTATCTGGGCAACCAATTGGTCCGTGGTGAGAAATGTGTTGTGTCGCAACAAACGTCCGATAATCTACTTTTGGAATCAATCACAGTTTTAGACGAAGTTGTCTGAAATCTAATGTTTTATCTCTGAAAAATACATTTCTCCCTTGCTGTTTGGATTGGATTTCCTCTTGGAATCCATTACAAAGACTGCCCTGCTGATCTgaaaagctttttttttaaaagtatataTTAGGAAATCGAAACTCTAATAGATAAATCTGTTACTATGAATGAGGGTGAAGCCGAGATTTCTAAGGAGAAAGACTGGAAAGATCTGGAGCCCAACTATGCCATTAAAATCTTCCTCACCGTCCTGTACAGCCTCATCCTGCTCACAGGCATTGTGGGTAATGGAGTCACCATCCAGGTGATGCAGGTGCTGCAGCATAATGGCTACATGCAGAAGTACGTGACGGACCACCTGGTGAGCCTGGCGTGCTCCGACCTTCTGGTCCTCCTCATAGGCATGCCCGTGGAGCTCTACAGCGCCACATGGTTCCCTTTCACCTCCACCTCGGGTGACGCTTCCTGCAAGATCTACAATTTCCTGTTCGAAGCCTGCAGTTATGCCACCATCTTGAACGTGGCGACACTCAGCTTTGAACGCTACATGGCCATTTGCCACCCATTCCGCTTTAAGGCCCTGGCAGGAGAGCGAACAGGGGGCCTCATTGCTCTCGCCTGGGTCACGTCTGTGTTCGTGGCTATCCCGCTGCTGTTCACCACGGGAATGGAGGGCCACGTCATAGAGCCAGACGTTGGGCCAGTCCAGAACCTGACATTCTGCACCAACctgagggagaggtggggggtgtACAGGGCCAGTATCTTTGTGGCGTTCATCGTGTACATGGTGGTGCTGGTCAGCGTTGGGGTCATGTGTCGGGGCATGATCCTGGTCCTTCAGAAAACCATGAGGCCCATGGGACGAGGGGTCAACGGAGCAGAGGGCACACCAAAACACGAGAGTGCCCGGGTTAAAGCCGCCAAGAAGCAAACCATACTTTTTCTAGGTTTAATAGTGGGCTCCCTCACCGTCTGCTGGCTTCCCAACCAGGTGCGTCGCCTGATGACCGCTGCCGTGCCCAAGTCCAGCTGGACCATGCCCTACTTCCGCAGCTATGTGGCGCTGCACCCTGTGGCCGACACCTTCTTTTACCTCAGCTCCGTGCTCAACCCCTTCCTGTACAACCTCTCCTCCAGCCAATTCCAACAGGTCTTTGTCCAGGTGCTGCGCTGCCGCCTCACCATTGAGCATGTCAACAAACGGACTCTGAGGAGCTCAGAGGAAAACTCGACCCGCTCGTTGCGGCCCCTGCTAAAGTCGCTGCGTTGTGGTCATGGCGGCAGGTCTACTCAGACTCAGAGCATGGAGTTCAAGATGCCTACGTTCACTACCTTACATATTCCAAAGGACACTCCAGCTCCCAGCCCTGAGGAGGCCCTTCCCACAACCGATGAATCACTCTCGATTTCGGTGCGAAAGGGAAATGAGCCTGATGAGACTGAAATATAAAGGGACGCATTCGGTGTTTTGAAGATTATTCAAATCCGAACGAGATGATCCGATCACTATCTGATTGAGATTTGTTGCTTCGACACATGGTAATAACATTTAGTCCGTATTGTGACCAGATTCCCTGGTTCCCTCCCTGTATGCAAATTAATCCAACCTGCCGATATGACACAAACTGTACAAATCGACAAAACAGCGCACTTTTATAGTCAATAGTTTTATACTCTCATCATTACAGCCTAATTTTGTTATCCACAGTTCAAGACTGAGCGTAATAGCCCACTGGGCATACCACGTCATTTCTAcgtggataattgggtaatatttggttgagacgttgatcaatgagattgcAACCTTTATTCATCCACTCCAAAGACAGTcaaaagttagttgaatttccagtgtgttatcactatgctttcaaccatctgcAATCGGGTTCATGTTATCAATCAACCAACCAGAGTTCCAAAGCCTGGGCCTAAAATTGTGTATAAATTATAATTTTGCAATGACATCGAAGATGTGAAAAATATTTGTTAGTCTGATGAGTGTAATGAGGAACATCCTGAATTTGCACTTGAagcatttatgaaactacttcTTCCGGTTAATGATAGGCATGCGCCCATCAAGAAACACTGTTAGAACTGATAAATCCCCATGGCTAGATGATTAAATGAAAAACTGTATggctgagagggatgaggcaaagggAATAGCAAATAAGTTTGACAACACACCAGACTGGCAAACATACAGTAAATTGAGAAATCACATAACTAAACCGAAAGACGAATAAACTATACTATGgaacaaagataaattattaaaagaatgatagtaaaaagttCTGGAGAACTTAAAATGAAATTCTAGGCAAAATAGCAAACTCGGCTCCATACTTCATTGAGGCAGGTGGTTTGTTCATAGCAAAACCTTTTGATATTACCTACCAGTAAGAACTTTTTTTTGAAAGATTGCATGTCATGCCTATGTTTGCTAAACAACAAATGCTGAGCCTTCATATTCATGCATAATGGACCAAATAATGAAAGATGAACACTGTAGTTTTGAGTTCCACAATTTGGGTGAGGAAGAGGGGGGACATTTTTTTCCTATCTATAAATAAGGACAAACCACCTGGTACcgacaacctggatggtaaattgCTGAGGTTGGTAGCGAAATAACTCctgtttgccacatcttcaatttaagccaaGAAGACTCAGACATGGAGGGAGGAAAAGGTCACTCATCTACTCAAGAAGAGCAGAACACCCTTTAATGGTTCAAACAGCTGACCAATTAGCCTGTTACAAGTGCTTAGCAAactgacacaaattactgatgattcgCTGAATTAAAATTGTGATTCATTTCAgaaaactaggcatatgtcattacttcacaggagagccatttgaatgtaaaccttttttttttaaatcaaaatgcgtttttgggcagaaatgc

Function

NR:

description
G-protein coupled receptor 39-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K08412 GPR39; G protein-coupled receptor 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579265.2 True 3285 mRNA 0.45 2 21669516 21701293

Neighbor

gene id symbol gene type direction distance location
LOC110501589 LOC106581698 coding upstream 2113 21628544 ~ 21667403 (+)
LOC110502066 NA coding upstream 724345 20943924 ~ 20945171 (+)
twist2 twist2 coding upstream 1303984 20359640 ~ 20365532 (+)
LOC110502064 LOC106581735 coding upstream 1325560 20338128 ~ 20343956 (+)
asb1 asb1 coding upstream 1387664 20269646 ~ 20281952 (+)
c22h2orf69 cssa21h2orf69 coding downstream 228069 21929362 ~ 21934705 (+)
esyt3 LOC106581688 coding downstream 334079 22035372 ~ 22076238 (+)
LOC118943635 NA coding downstream 375084 22076377 ~ 22079829 (+)
LOC110501601 LOC106581998 coding downstream 531971 22233264 ~ 22235783 (+)
LOC110501603 NA coding downstream 1343323 23044616 ~ 23050204 (+)
G1788294 LOC106581699 non-coding upstream 78533 21572582 ~ 21590983 (+)
G1788331 NA non-coding upstream 100609 21565065 ~ 21568907 (+)
G1787919 NA non-coding upstream 179307 21489955 ~ 21490209 (+)
G1787918 NA non-coding upstream 179897 21489352 ~ 21489619 (+)
G1787916 NA non-coding upstream 182224 21487057 ~ 21487292 (+)
G1788441 NA non-coding downstream 39709 21741002 ~ 21741497 (+)
G1788442 NA non-coding downstream 40244 21741537 ~ 21746817 (+)
G1788457 NA non-coding downstream 59923 21761216 ~ 21761864 (+)
G1788460 NA non-coding downstream 64614 21765907 ~ 21766137 (+)
G1788648 NA non-coding downstream 69736 21771029 ~ 21771228 (+)
G1787719 NA other upstream 533039 21134265 ~ 21136477 (+)
G1786330 NA other upstream 1384945 20283181 ~ 20284571 (+)
G1785947 znf142 other upstream 2007590 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 2041756 19603742 ~ 19627954 (+)
G1788811 LOC106581691 other downstream 294071 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 297180 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 1714800 23416093 ~ 23432383 (+)
G1790805 NA other downstream 2417269 24118562 ~ 24119475 (+)
LOC110501605 LOC106582130 other downstream 2692775 24394068 ~ 24423067 (+)

Expression


Co-expression Network