LOC110501591 (LOC106581664)


Basic Information

Item Value
gene id LOC110501591
gene name LOC106581664
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21708881 ~ 21766231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579266.2
TTGAAACCCACGCCCATCGTGACGTGTGGCACCGCATGAAATGGAGTGAAAATAGTGTGTCCCCTTAAAATCAGAGGTTTCCAGCGCTGGACGTGTATAGAAGGCTACCGTGGACGTTCTTCGGATCCATGTATGAACTCTAACTCTGAGCTCCTCGCAACTTTGCCAGGTCTAATGTTTCCTGATCAAGTGACACCAGCGAGAGAATGCGGATGCTTACTTACGCAAGTTTGTTCTGGTTTATGTTCAAGTCAGGGCTGGCTCTGCAGATCCAGTGTTATCACTGTGAAGAGGTCACTCAAAATGACTGCTCCACACCTGAGTTCATCGTCAACTGCACTGTCAACGTTCAGGACATGTGCCAGAAGGAGGTATTAGTGACAGAAGACGGGAAGCACTACCGCAAGTCCTGCGCATCGTCTGGGGCCTGCCTCATCGCCTCCTCTGGCTACCAGCAGTTCTGCACAGGGAAGCTCTACTCAGTGTGCATCAGCTGCTGCAACACTCCCCTCTGTAATGGACCCCGTCAGAAGAAACAGAGTTCCAGAAACAGAGTTCCCTCTGCCGCCTCGTCCCTAAGCCCACTACACAGCCTCTCCATCCTTTTTCTTCCCTTCCTCCTGCGCCCACCCTCCATATTCAGCTGAGAGCCTATGATTGGCTGGTTTGGTCTCATCAAGACTGTGGTTAAAATTTGAGGCTTGATACGGTGTCCATATCGTCAATGGATATATGACGCTGTCCTAACATAGACACTGTATTTAGATGATGTCTTAATAAGGAtcatttgtccccatgtgcagttgcaaactgtagtctggctttttttatggcagttttgaagcagtggcttcttccttgctgtccGGCCTTTCAGGCTATATcaatacaggactcgttttactgtggatatagatacttttgtacctgtttcctccagcatcttgacaaggtcttttgctgttgttctgggattgattttcac

Function

NR:

description
ly6/PLAUR domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579266.2 True 985 mRNA 0.48 3 21708881 21766231

Neighbor

gene id symbol gene type direction distance location
LOC110501588 LOC106581699 coding downstream 117882 21572564 ~ 21590999 (-)
LOC110501587 LOC106586113 coding downstream 261678 21143084 ~ 21447203 (-)
LOC100136257 LOC100136257 coding downstream 931724 20765912 ~ 20777157 (-)
LOC110501586 LOC106581869 coding downstream 968927 20730910 ~ 20739954 (-)
LOC118943627 NA coding downstream 1016567 20690516 ~ 20692314 (-)
LOC110501594 LOC106581696 coding upstream 22197 21788428 ~ 21913721 (-)
ftcdnl1 LOC106581695 coding upstream 156569 21922800 ~ 21936414 (-)
stk17b LOC106581692 coding upstream 170283 21936514 ~ 21957704 (-)
hecw2a LOC106581691 coding upstream 202921 21969152 ~ 22021354 (-)
LOC110502069 LOC106582011 coding upstream 472947 22239178 ~ 22636506 (-)
G1788570 NA non-coding downstream 40455 21664850 ~ 21668426 (-)
G1788496 NA non-coding downstream 144277 21564334 ~ 21564604 (-)
G1788278 NA non-coding downstream 218491 21490190 ~ 21490390 (-)
G1788277 NA non-coding downstream 219532 21489121 ~ 21489349 (-)
G1788266 NA non-coding downstream 232141 21476524 ~ 21476740 (-)
G1788661 NA non-coding upstream 11561 21777792 ~ 21778222 (-)
G1788664 NA non-coding upstream 15210 21781441 ~ 21781669 (-)
G1788854 NA non-coding upstream 16984 21783215 ~ 21785625 (-)
G1788859 NA non-coding upstream 21659 21787890 ~ 21788186 (-)
G1787166 NA other downstream 1252898 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 1362867 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 2049781 19655763 ~ 19666201 (-)
G1785753 NA other downstream 2387022 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 2529697 19175567 ~ 19179266 (-)
G1789581 NA other upstream 651899 22418130 ~ 22419498 (-)
G1790280 NA other upstream 1398250 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 1666763 23368423 ~ 23460589 (-)
G1791405 NA other upstream 2560498 24326729 ~ 24327127 (-)

Expression


Co-expression Network