ftcdnl1 (LOC106581695)


Basic Information

Item Value
gene id ftcdnl1
gene name LOC106581695
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21922800 ~ 21936414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958958.1
CTGCAAAGAATGGTCTTTAAACAGAGAAACTACCGGCGGCCATGAACAACAGAACTAAGGCATGCCATCATCTGGGGCATTGTGCTGCCAAAAGCAAGGGGATGGCTCATAGTGCCATAGGCCAGCGTCTGGTCGCCTGCCTGCTCAATGTCTCAGAAGCCCGCAGGAAGGAATTGGTGGAAACAGTGGCCAGGGCAGCTGTATTTGACAGTAATGGCGGACGGCGAGAAGGGACAACAGTGCTCAACATCTTTAATGATCACGACTACAACCGGTCTGTCATCACCATCGTGGCCAGTATTGACTGCATTAAGGAGGCAGTGCTGTCTGCGTGTGAGCAGGCCTGTCGAATGATTGACATGAGTGCCTATGCAGGCGGCCACCCAACGATGGGCGCTGTGGACCTGGTGCCCCTCTACCCTCTGGGAGAGGAGGTGGGACTGGGGGACTGTGCCAAGGAagctagagCGGTGGCTGCTGGGCTGACTGAACGGGTCAGTGGCACCAGTGCTTTCTTCTTTGGTTGGGCAGACTCACCCCAGCACCGAGGCCTGGCGCAGAGACGCAAGGAGATGGGCTGGTTCAGGAAGAATCCAGACACAGGAGCCAGCCGACCAGACGTGGGGCCCCTGCCACAGAAACGATATGGCCTCACAGGTGTCGGAGCTAGTCCCTACGTCATGAACTGCAACGTCACCATCGACACCCAGGACCTGGCTCTAGGGCGCAGCATCGCCATGTCGATTAGGGATTCTACTCCTGGGGGAATACCGGGGGTGCAAGTGCTGGCCCTGCCACACGAGGGTGCCGTGGAGATAGCCTGCAATGTGGAGAGCATGAAGGGGAACCCTCCTAGCCAGGTTGGGGAGAGGGGCGAGCCGTGGCCCACCTTCAGTATTGGTGGGCAGCCATACTGCCACGCCCCAGAATCTCTTATCACAGCCAGGGTGGCAGAGCTGGCAGGACGGCAGGGGGTGGCCACTAAGGGCACAGCACTGGTGGGGTTCACGCCCTATGAGTGCAGAGGCCTGGCAGAGAAAGCTTTGTCATTGGGCATCGCTGAGTTCTGGAAAGAACTGCGCAGGTTACACATGTAACCTTCCAAACTTTACTACAAAACCTCAACATGTTGTATTATTCAGGTTGATTGAACGAAGAATGTAAAAGGACATGCAAGCTGTTATCGGCAAGGTTTAAAGCATATGAATTGCAGAAATGCACGACTATTACACAACAGTTTTGAATCTGTGGGCTCTGGATTTGATGTAGCACATTTGAACAAGGATATTGTACAGAGAATCTCATTTAGTGTGGTGATCATGGTTGAAAACTTCAATGCCATAGACCTTAACTGTGATCATCTTAATATAAGTACTCATCAAGACACAAAGGGACAAATTACCAATTTGGAGTTGAGGTAATACTTTTTTGTAAATCATTTAACGATGTCAGTGGGATACCTACACAATTAATTTTGTTAAGCATGCATATCCCAAGTCAGAGTAACACTGAAAGTGCTGCAAAATGTTGCAATTTATTGTTCTATTAACAGGTTAATCCTTCTTTATTTGACTTTAAAGAATAAACATGACTTTATTATAACTTTA
>XM_021579274.2
TTGTCTCTCGATTTATAAACTCAATGGTTGAAGTTTGAATTTACTACTGAGTTACTAAACCCAGAGGTGCAACATCGCGAGAGGCTTCCGGGAACGCTTGAGAAGCAGACCAGGCCGGGGGTTGAGAAGTCAATTACAGAAGGGGATGGCTCATAGTGCCATAGGCCAGCGTCTGGTCGCCTGCCTGCTCAATGTCTCAGAAGCCCGCAGGAAGGAATTGGTGGAAACAGTGGCCAGGGCAGCTGTATTTGACAGTAATGGCGGACGGCGAGAAGGGACAACAGTGCTCAACATCTTTAATGATCACGACTACAACCGGTCTGTCATCACCATCGTGGCCAGTATTGACTGCATTAAGGAGGCAGTGCTGTCTGCGTGTGAGCAGGCCTGTCGAATGATTGACATGAGTGCCTATGCAGGCGGCCACCCAACGATGGGCGCTGTGGACCTGGTGCCCCTCTACCCTCTGGGAGAGGAGGTGGGACTGGGGGACTGTGCCAAGGAagctagagCGGTGGCTGCTGGGCTGACTGAACGGGTCAGTGGCACCAGTGCTTTCTTCTTTGGTTGGGCAGACTCACCCCAGCACCGAGGCCTGGCGCAGAGACGCAAGGAGATGGGCTGGTTCAGGAAGAATCCAGACACAGGAGCCAGCCGACCAGACGTGGGGCCCCTGCCACAGAAACGATATGGCCTCACAGGTGTCGGAGCTAGTCCCTACGTCATGAACTGCAACGTCACCATCGACACCCAGGACCTGGCTCTAGGGCGCAGCATCGCCATGTCGATTAGGGATTCTACTCCTGGGGGAATACCGGGGGTGCAAGTGCTGGCCCTGCCACACGAGGGTGCCGTGGAGATAGCCTGCAATGTGGAGAGCATGAAGGGGAACCCTCCTAGCCAGGTTGGGGAGAGGGGCGAGCCGTGGCCCACCTTCAGTATTGGTGGGCAGCCATACTGCCACGCCCCAGAATCTCTTATCACAGCCAGGGTGGCAGAGCTGGCAGGACGGCAGGGGGTGGCCACTAAGGGCACAGCACTGGTGGGGTTCACGCCCTATGAGTGCAGAGGCCTGGCAGAGAAAGCTTTGTCATTGGGCATCGCTGAGTTCTGGAAAGAACTGCGCAGGTTACACATGTAA

Function

NR:

description
formimidoyltransferase-cyclodeaminase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958958.1 False 1607 mRNA 0.50 6 21922800 21936414
XM_021579274.2 True 1141 mRNA 0.57 6 21923310 21929159

Neighbor

gene id symbol gene type direction distance location
LOC110501594 LOC106581696 coding downstream 9079 21788428 ~ 21913721 (-)
LOC110501591 LOC106581664 coding downstream 156569 21708881 ~ 21766231 (-)
LOC110501588 LOC106581699 coding downstream 331801 21572564 ~ 21590999 (-)
LOC110501587 LOC106586113 coding downstream 475597 21143084 ~ 21447203 (-)
LOC100136257 LOC100136257 coding downstream 1145643 20765912 ~ 20777157 (-)
stk17b LOC106581692 coding upstream 100 21936514 ~ 21957704 (-)
hecw2a LOC106581691 coding upstream 32738 21969152 ~ 22021354 (-)
LOC110502069 LOC106582011 coding upstream 302764 22239178 ~ 22636506 (-)
LOC110501602 LOC106582008 coding upstream 1054280 22990694 ~ 22996267 (-)
LOC118943636 LOC106582008 coding upstream 1087556 23023970 ~ 23042872 (-)
G1788856 NA non-coding downstream 24672 21897596 ~ 21898128 (-)
G1788859 NA non-coding downstream 134614 21787890 ~ 21788186 (-)
G1788854 NA non-coding downstream 137175 21783215 ~ 21785625 (-)
G1788664 NA non-coding downstream 141131 21781441 ~ 21781669 (-)
G1788964 NA non-coding upstream 4328 21940742 ~ 21941547 (-)
G1788980 NA non-coding upstream 28208 21964622 ~ 21965058 (-)
G1788981 NA non-coding upstream 30368 21966782 ~ 21967087 (-)
G1788988 NA non-coding upstream 41972 21978386 ~ 21978618 (-)
G1787166 NA other downstream 1466817 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 1576786 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 2263700 19655763 ~ 19666201 (-)
G1785753 NA other downstream 2600941 19321188 ~ 19321859 (-)
G1789581 NA other upstream 481716 22418130 ~ 22419498 (-)
G1790280 NA other upstream 1228067 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 1496580 23368423 ~ 23460589 (-)
G1791405 NA other upstream 2390315 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 2912177 24848591 ~ 24849752 (-)

Expression


Co-expression Network