c22h2orf69 (cssa21h2orf69)


Basic Information

Item Value
gene id c22h2orf69
gene name cssa21h2orf69
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21929362 ~ 21934705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579273.2
TGCGCAGTTTGGCGCGAGACGACCGTTAGAACCGATTACGTTTTTCAGCGCATGAGTTTAGCAAGCAAAAGACACCATGACTTCGCCTACAACAAGCGTGATCTGGgttttctattggagaagcagtttctgcccaTCTTTATATTGTACGGTCTTTTGCTGTGATCATGCGCAATTCGTATTTTGCTTACAGGAACCGGATGAGGGCTGGTTCCCGTGCTGACGTCCTTGGCAAACAGCGACACGTGGAGGACCAAAATGCAAAGACAACAACAGTACTCGCTTTAGCGTCACCCAGGTTGACAAAATTATCAACGTCTAGGATAAACAACGATGTTGAGGAGGAACTACAACGACATAAGCCCCCATGATAACCGCTCGTGGAGTTGCAACGGGCTTTCATTGTGCAGCCAAAGCAATGAGCGCTGCAGTAGGTTCATCGCCATTCGAGCCTCCAGAGCATTGTCTGCCTGGAGTCCAGGAAACACGCCCTGGGAGCCCGCCGCGACTGCGGAGACTGGTCGACATTCCGGGATGCCAACCGGACCGAGTCAACGACTTGCTTCTACTCAGTAACGTTACTTCGGATTCACAGGGACAGTGCGGTTCAGACGCCGAAGATCGCAGTGCACATGTTGTGTTTTTCCCTGGAGACATACAGAATTTCCAGCAGGAGATGTCGCTCCAGCCAGAGGGGGCGCAGTGGCTATCCTGGAGCCTGGAGAACGTTGCCCTCACCCTGGGTCGCCGCTTCCCTGACCGCCACGTGTGGGTGATTCGAGCCTCCCGCATGTACCTGCACAAGTTCAGCTGCTATCACAACTTTGTGGAGAGCAACCTGTTTGGAGCGCCCGAGCACTCACCTGACTACGGAGCATTTCGCCACCTGAGGGCACTGCTGAGCAACGGCATGGAGCGCGCTGGCTTGCCCAACCCCCTCCCGCTTCAAAGGGGTGGCGACACAGTCGCCCCGGGTTTCTCCTTGGCCGTGGTGGGCTTCAGCAAAGGCTGTGTGGTGCTCAACCAGATGGTGTACGAGCTGGCGAGGGCACGGGCTGACCCGGAGCTGGGGCCATTTGTGGAGCGCCTTTCAGACATGTACTGGCTGGACGGTGGCCACCCGGGAGGCAGCGAGACCTGGGTGACTGACAAGCGGGTGCTGGGGGAACTGGCGGCCAGCGGGGTTGCGGTCCACGCCCACGTGACACCGTACGAGGTGCGTGACCCCATGCGAGCCTGGGTGGGCCGAGAGCATGGGTGCTTTGTCAAGAAACTTGAGGATCTAGGGGCCCGACTCAGCCAGAAGATGCACTTTGAGGATGAGCCCGCATCCATCGAGAACCACTTCCGGATCATCCAGGATTTCTGAGGCGTTTGTTCATTCCTGATTGTCTATTGGCAtgcaaagtaaaaaaaataaaaatactgtcAAAGCTTGATTCAATTTGCAAATTTCTGGTTTAATGCAAGGGGCCAAAGCTAGTTGGGTCTCATTCATCCCTCTTGGTTCTTCCTTTCATGCAGAAGTCAATCTATCACTATCCCTATCTCCCTAGACCTCATATTTCATGATCTAAGGGCTCAAATATAATTTACTTTAAAATCCAAGCATGCAGATCCCAATTGGAACGCATCTAGACACCCCTCAGTCATTTCTCCTAGGAATGTATTTCCTTACTTCTACTAGATTGGCCTTTACCATAGACAAAGTTTGCATATTGTACCGAATAAGGGCTATTTGCATGTGATCATTTGACAGAATGCACCTTTTAAAGAGTATGTAGCACAAAATCAAACCTTTAATGAAAAAAATTGGGGAAATGGCACCGCACAACCTCCAGTAAAGTCACTTTCTAACTAGGGATTTCATGTTTAATTTAGGTAgtacagtaattctgctcatagattatgcatgtatgaactacacttTAACATCCAGCCCATAGCGAAAGGTTTAAAAAATGCTGTACTTACTAGTCGCCAAAATTCCGGAGCATGTCTTAAGATCAAGGGCCAGACCTGTCAATTGTCAGATTATCTAACCTTGATTGTAATCTTTGCCTTTTTGTGAAATACAACACATTGATTGTAATCTAAAAAGTAGCTTTGATCCAATGTCCAATGTGGTTGAGTAAAGTTTATTTTCTTGCATAATTTCGGGGGCAACAGTTGACTATTGCTCAAGTGCAGCAGCTCCTTCCATTGAACTTTGTCTTGATGTCAAGTGACATACTGTGGTGACTTGGAGTGGGCCTCTGTTTCACCAAGGAACACTTGGTGGTGTTTGTGTGGAACAACTACATTTCCTGATGTTGCTTGGGTCAGAATGTCCCGTCTTGTAAATTGATTTATGTTCAGTGATGGACTTTGAGTTGGAGGTTAGCTTAAATTAATCTTGCAGGCTGATGTTCAGCATTCATACTGTATTCTAATAGACTAGAGTGATATCTCTTGGTAAGCTTATAGAGCTGCTTTTGCATTACCTACCATGCTGGATTTCTGGTGATTGTTTCAATGGCTACTGAAATGCAATGAATGTACTTTTCTACTTCATAGCCATTCCATTTTTCAAATGCTGTTTTTGTTCAAGACATGCTATTCCATAGCTGCTGTTGTATGATTTGCCCATTTAGAAATAAATGAACAACTCTTAAAAGATACAA
>XM_021579272.2
TTTTCAGCGCATGAGTTTAGCAAGCAAAAGACACCATGACTTCGCCTACAACAAGCGTGATCTGGgttttctattggagaagcagtttctgcccaTCTTTATATTGTACGGTCTTTTGCTGTGATCATGCGCAATTCGTATTTTGCTTACAGGAACCGGATGAGGGCTGGTTCCCGTGCTGACGTCCTTGGCAAACAGCGACACGTGGAGGACCAAAATGCAAAGACAACAACAGTACTCGCTTTAGCGTCACCCAGGTTGACAAAATTATCAACGTCTAGGATAAACAACGATGTTGAGGAGGAACTACAACGACATAAGGTAGAAAGTTGTTTATGACTATGTTGTCGATGTTGCATCGTTTTGCACGTTCATTGTTGTATGTCTGCCTCGGATGCTGTACATTAACTGGCCATGCATTTGCGTCTAAACTACATTAATCCGGTTTTAGCCCCCATGATAACCGCTCGTGGAGTTGCAACGGGCTTTCATTGTGCAGCCAAAGCAATGAGCGCTGCAGTAGGTTCATCGCCATTCGAGCCTCCAGAGCATTGTCTGCCTGGAGTCCAGGAAACACGCCCTGGGAGCCCGCCGCGACTGCGGAGACTGGTCGACATTCCGGGATGCCAACCGGACCGAGTCAACGACTTGCTTCTACTCAGTAACGTTACTTCGGATTCACAGGGACAGTGCGGTTCAGACGCCGAAGATCGCAGTGCACATGTTGTGTTTTTCCCTGGAGACATACAGAATTTCCAGCAGGAGATGTCGCTCCAGCCAGAGGGGGCGCAGTGGCTATCCTGGAGCCTGGAGAACGTTGCCCTCACCCTGGGTCGCCGCTTCCCTGACCGCCACGTGTGGGTGATTCGAGCCTCCCGCATGTACCTGCACAAGTTCAGCTGCTATCACAACTTTGTGGAGAGCAACCTGTTTGGAGCGCCCGAGCACTCACCTGACTACGGAGCATTTCGCCACCTGAGGGCACTGCTGAGCAACGGCATGGAGCGCGCTGGCTTGCCCAACCCCCTCCCGCTTCAAAGGGGTGGCGACACAGTCGCCCCGGGTTTCTCCTTGGCCGTGGTGGGCTTCAGCAAAGGCTGTGTGGTGCTCAACCAGATGGTGTACGAGCTGGCGAGGGCACGGGCTGACCCGGAGCTGGGGCCATTTGTGGAGCGCCTTTCAGACATGTACTGGCTGGACGGTGGCCACCCGGGAGGCAGCGAGACCTGGGTGACTGACAAGCGGGTGCTGGGGGAACTGGCGGCCAGCGGGGTTGCGGTCCACGCCCACGTGACACCGTACGAGGTGCGTGACCCCATGCGAGCCTGGGTGGGCCGAGAGCATGGGTGCTTTGTCAAGAAACTTGAGGATCTAGGGGCCCGACTCAGCCAGAAGATGCACTTTGAGGATGAGCCCGCATCCATCGAGAACCACTTCCGGATCATCCAGGATTTCTGAGGCGTTTGTTCATTCCTGATTGTCTATTGGCAtgcaaagtaaaaaaaataaaaatactgtcAAAGCTTGATTCAATTTGCAAATTTCTGGTTTAATGCAAGGGGCCAAAGCTAGTTGGGTCTCATTCATCCCTCTTGGTTCTTCCTTTCATGCAGAAGTCAATCTATCACTATCCCTATCTCCCTAGACCTCATATTTCATGATCTAAGGGCTCAAATATAATTTACTTTAAAATCCAAGCATGCAGATCCCAATTGGAACGCATCTAGACACCCCTCAGTCATTTCTCCTAGGAATGTATTTCCTTACTTCTACTAGATTGGCCTTTACCATAGACAAAGTTTGCATATTGTACCGAATAAGGGCTATTTGCATGTGATCATTTGACAGAATGCACCTTTTAAAGAGTATGTAGCACAAAATCAAACCTTTAATGAAAAAAATTGGGGAAATGGCACCGCACAACCTCCAGTAAAGTCACTTTCTAACTAGGGATTTCATGTTTAATTTAGGTAgtacagtaattctgctcatagattatgcatgtatgaactacacttTAACATCCAGCCCATAGCGAAAGGTTTAAAAAATGCTGTACTTACTAGTCGCCAAAATTCCGGAGCATGTCTTAAGATCAAGGGCCAGACCTGTCAATTGTCAGATTATCTAACCTTGATTGTAATCTTTGCCTTTTTGTGAAATACAACACATTGATTGTAATCTAAAAAGTAGCTTTGATCCAATGTCCAATGTGGTTGAGTAAAGTTTATTTTCTTGCATAATTTCGGGGGCAACAGTTGACTATTGCTCAAGTGCAGCAGCTCCTTCCATTGAACTTTGTCTTGATGTCAAGTGACATACTGTGGTGACTTGGAGTGGGCCTCTGTTTCACCAAGGAACACTTGGTGGTGTTTGTGTGGAACAACTACATTTCCTGATGTTGCTTGGGTCAGAATGTCCCGTCTTGTAAATTGATTTATGTTCAGTGATGGACTTTGAGTTGGAGGTTAGCTTAAATTAATCTTGCAGGCTGATGTTCAGCATTCATACTGTATTCTAATAGACTAGAGTGATATCTCTTGGTAAGCTTATAGAGCTGCTTTTGCATTACCTACCATGCTGGATTTCTGGTGATTGTTTCAATGGCTACTGAAATGCAATGAATGTACTTTTCTACTTCATAGCCATTCCATTTTTCAAATGCTGTTTTTGTTCAAGACATGCTATTCCATAGCTGCTGTTGTATGATTTGCCCATTTAGAAATAAATGAACAACTCTTAAAAGATACAA

Function

NR:

description
UPF0565 protein C2orf69 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579273.2 False 2663 mRNA 0.48 4 21929362 21934705
XM_021579272.2 True 2752 mRNA 0.47 3 21929403 21934705

Neighbor

gene id symbol gene type direction distance location
LOC110501590 LOC106581697 coding upstream 228069 21669516 ~ 21701293 (+)
LOC110501589 LOC106581698 coding upstream 261959 21628544 ~ 21667403 (+)
LOC110502066 NA coding upstream 984191 20943924 ~ 20945171 (+)
twist2 twist2 coding upstream 1563830 20359640 ~ 20365532 (+)
LOC110502064 LOC106581735 coding upstream 1585406 20338128 ~ 20343956 (+)
esyt3 LOC106581688 coding downstream 100667 22035372 ~ 22076238 (+)
LOC118943635 NA coding downstream 141672 22076377 ~ 22079829 (+)
LOC110501601 LOC106581998 coding downstream 298559 22233264 ~ 22235783 (+)
LOC110501603 NA coding downstream 1109911 23044616 ~ 23050204 (+)
LOC110502117 NA coding downstream 1118333 23053038 ~ 23055743 (+)
G1788669 NA non-coding upstream 139810 21789296 ~ 21789552 (+)
G1788668 NA non-coding upstream 142959 21786089 ~ 21786403 (+)
G1788667 NA non-coding upstream 145643 21783213 ~ 21783719 (+)
G1788659 NA non-coding upstream 151139 21777892 ~ 21778223 (+)
G1788648 NA non-coding upstream 158134 21771029 ~ 21771228 (+)
G1788768 stk17b non-coding downstream 1815 21936520 ~ 21940409 (+)
G1788769 stk17b non-coding downstream 8357 21943062 ~ 21957651 (+)
G1788791 NA non-coding downstream 33934 21968639 ~ 21971927 (+)
G1788792 NA non-coding downstream 38902 21973607 ~ 21974527 (+)
G1788793 NA non-coding downstream 40788 21975493 ~ 21975781 (+)
G1787719 NA other upstream 792885 21134265 ~ 21136477 (+)
G1786330 NA other upstream 1644791 20283181 ~ 20284571 (+)
asb1 asb1 other upstream 1647508 20269646 ~ 20281952 (+)
G1785947 znf142 other upstream 2267436 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 2301602 19603742 ~ 19627954 (+)
G1788811 LOC106581691 other downstream 60659 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 63768 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 1481388 23416093 ~ 23432383 (+)
G1790805 NA other downstream 2183857 24118562 ~ 24119475 (+)
LOC110501605 LOC106582130 other downstream 2459363 24394068 ~ 24423067 (+)

Expression


Co-expression Network