Gene
RNA
| Item | Value |
|---|---|
| gene id | hecw2a |
| gene name | LOC106581691 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 21969152 ~ 22021354 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: E3 ubiquitin-protein ligase HECW2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021579278.2 | False | 7255 | mRNA | 0.52 | 30 | 21969152 | 22021354 |
| XM_021579280.2 | False | 7192 | mRNA | 0.52 | 30 | 21969152 | 22021354 |
| XR_005038799.1 | False | 4477 | mRNA | 0.57 | 29 | 21973037 | 22021354 |
| TU2047775 | True | 365 | lncRNA | 0.43 | 1 | 21969166 | 21969530 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| stk17b | LOC106581692 | coding | downstream | 11448 | 21936514 ~ 21957704 (-) |
| ftcdnl1 | LOC106581695 | coding | downstream | 32738 | 21922800 ~ 21936414 (-) |
| LOC110501594 | LOC106581696 | coding | downstream | 55431 | 21788428 ~ 21913721 (-) |
| LOC110501591 | LOC106581664 | coding | downstream | 202921 | 21708881 ~ 21766231 (-) |
| LOC110501588 | LOC106581699 | coding | downstream | 378153 | 21572564 ~ 21590999 (-) |
| LOC110502069 | LOC106582011 | coding | upstream | 217824 | 22239178 ~ 22636506 (-) |
| LOC110501602 | LOC106582008 | coding | upstream | 969340 | 22990694 ~ 22996267 (-) |
| LOC118943636 | LOC106582008 | coding | upstream | 1002616 | 23023970 ~ 23042872 (-) |
| dcbld2 | LOC106582006 | coding | upstream | 1035290 | 23056644 ~ 23079508 (-) |
| LOC110502006 | LOC106582004 | coding | upstream | 1176412 | 23197766 ~ 23235688 (-) |
| G1788981 | NA | non-coding | downstream | 2065 | 21966782 ~ 21967087 (-) |
| G1788980 | NA | non-coding | downstream | 4094 | 21964622 ~ 21965058 (-) |
| G1788964 | NA | non-coding | downstream | 27605 | 21940742 ~ 21941547 (-) |
| G1788856 | NA | non-coding | downstream | 71024 | 21897596 ~ 21898128 (-) |
| G1789047 | NA | non-coding | upstream | 62281 | 22083635 ~ 22091952 (-) |
| G1789062 | NA | non-coding | upstream | 115443 | 22136797 ~ 22137042 (-) |
| G1789066 | NA | non-coding | upstream | 117214 | 22138568 ~ 22144965 (-) |
| G1789072 | NA | non-coding | upstream | 137467 | 22158821 ~ 22164963 (-) |
| G1789075 | NA | non-coding | upstream | 145096 | 22166450 ~ 22167554 (-) |
| G1787166 | NA | other | downstream | 1513169 | 20390516 ~ 20455983 (-) |
| G1786832 | LOC100136012 | other | downstream | 1623138 | 20345699 ~ 20346014 (-) |
| znf142 | znf142 | other | downstream | 2310052 | 19655763 ~ 19666201 (-) |
| G1785753 | NA | other | downstream | 2647293 | 19321188 ~ 19321859 (-) |
| G1789581 | NA | other | upstream | 396776 | 22418130 ~ 22419498 (-) |
| G1790280 | NA | other | upstream | 1143127 | 23164481 ~ 23169363 (-) |
| LOC110501997 | LOC106582152 | other | upstream | 1411640 | 23368423 ~ 23460589 (-) |
| G1791405 | NA | other | upstream | 2305375 | 24326729 ~ 24327127 (-) |
| G1792342 | LOC106582127 | other | upstream | 2827237 | 24848591 ~ 24849752 (-) |
| G1788988 | NA | non-coding | upstream | 8856 | 21978386 ~ 21978618 (-) |
| G1788990 | NA | non-coding | upstream | 12131 | 21981661 ~ 21981879 (-) |
| G1788992 | NA | non-coding | upstream | 13325 | 21982855 ~ 21983230 (-) |
| G1788993 | NA | non-coding | upstream | 16948 | 21986478 ~ 21986709 (-) |
| G1788994 | NA | non-coding | upstream | 17497 | 21987027 ~ 21987240 (-) |
