LOC110501602 (LOC106582008)


Basic Information

Item Value
gene id LOC110501602
gene name LOC106582008
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22990694 ~ 22996267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579286.2
TCTGGCTGGGGGTGTGTGGAGAACACTTCTCATAATGTTAGTTTTCTGCCTGGAATGTCCACATTGCTGGGAACTACgggaaggagaggtgggagagcGGAGAGGGAATAGGATTTGATCTGAGACTTTACGGACATACAGATCAGGCTGAAATTACTGCTCATCCAGGAGAAAGCCTACTGggaaagaaaggaggaggagagcaagagagaggtcTCTGCTTTAAAGGAAGAGCTGACTAAACTCAAGTCTTTTGCATTGTTGGTCGTTGACGAGCAGCAGCGCCTGACGAATCAACTTTCACAGCAGAGCAAACGTGTCCAGAAACTGACAGAAATCGGCGACCACGCCCAACAGGAGCTAAACTCCACCCATTCCAGGGCAAAGGAGGAGGAGCTTAAATCACTTCGTCTGGAGGCAGAGCTACACAAACAAGCTTCCTACTTCCGCCTCAAACAGGAAGCCATGATGGCCAAACTGTCCAATGAGGACACCCAGAACCGGCAGCTGCGTCAGCGGTTGGCTGCCCTCAGTCGAAAGCTGGATGAGCTGGAGGGGACCAAGGGCGCCTTCCAGAGGGCCGAGGAGGAACTGAAGGAGCTGAGGGACAGGCTCGGCCATGGGAGAGAAGGGTGCGCAACAACCCCTGGTTTGCTTTCAGAGGTGGAACAGCTGAGGATGAGGGTGGTGGAGATGGAAGGAAAGGATGAGGAGCTGATCCGAATGGGGGACCAATGCCGGGACCTGGACCGAAACCTTGGGAGGGAGTCCAGCCAGAGTCGCAGCCTGAAGGCCGAGGTGGACAAGCTGAATGGCCGAATCAGTGAGCTGGACAGATTGGAGGAGGCTCTTGGGAAAAGCAGGCAGGAGTGCAGCTCTCTGAAGGGAAGCCTGGAGAAGGAGAGGGCCAGCACCAAGCAGCTGTCTGGAGAGCTGGATACCCTCAGGGTGCGGGTAAGGGAACTGGAAGCCATCGAGGGCCAGCTGGAAAAATCTGAGGGGGTGTTGAGACAGGACTTTGCCAAGCTGAGAACACTCACAGTGGTAGTGGTTGAAGAGAGGAAGAACATGGCTGAGCGACTCAGGCAGACAGAGGAGAAACTCCAGGAGAAGAAGGATGGGAAACTCCAGGCTGAGAGTGACAGAGTGTCAACAGCCACAGAGAAACTCATTGAGGAGAGCCGCAAGGCACTGAGATCTAAAGCAGAGCTCGAGGACAGGTTTCAGAGTGTGGCGAAAGAGCGGGACGTGCTGCGGGTGAGGCTGAGGGCAGAGGAGGATAGGAGTGGGGATCTGCAAAGCAAAGTTAGCGCCATGAAAAAAAGGATTCTGATCTTGGAGGTCAAAAAGGGGGAGTCATGTCGAGAAGTCAAGAGCCCCCTGCTGGACAACACTAACCACGGCTAccaacaggaagacaacaaagtcaaagaacTCACCCAGGAGGTAGATAGACTGAGGAGGAGACTCATGCAGAagggagtgatagagggagagcTGATGAAGGCAGAGGAGGACTTTGAGTCTTTGGAGAGGAGGTGCTCCAAGGAGCAGGAGAGAGCCAGAGCTCTGGCAGTGGAGCTGGAGGAGTCCAGGAGGGAGCTCTCCAAGTACCAGCTGGCTGAGAAGAAGGAGAACAACCAGGAGCACCTCCTCCTCAGGCGACTCCAGGAGGAGCAGGTCAAGTCTGTCCTCCTCAAAAGGGAGGTGGAGGCACTCAAGGAGAAGGTCCAGAGGCTGATGGGGACAGAGGAGTCCATCTGTCGAGTGCAGATGGACAGCTCCACCCTGCAGAAGAGGCTGACCCAGCAGGAGGTCAGGAACAGGGAGCTGGCCAGGGAGATGGAGGGACTGACCCATGAGCTGGAACGGTACCGGCGATTCAGCAAGAGCCTCCGGCCAGGCATGACTGGCCGATGCTTCTCAGACCTGCATCTGTGCACCAAGGAGGTGCAGACGGAGCCCGCAGACACCCTGCCACCTGACTACAGGAGCCTGACTCCGCTGACTCTCAGCGGTAAACTGTATGAGGAGATCAATGTAGAGGACCCAAATCAAAAGAAGGATTGTGTCATCAACAAGTGCAACTCACCTCCGCTGAACAACATTGAAAGCTTGAACCACCAAAACAATAATGTGAGGCGATTCAGCATTCCTTCACCCAACGGCAAGGACAATCACCATCCCATTAACTGCAAAGTGTTGAACAGTAACTTTTTCCAGAAAGGAGATGTGATGCTTGCACACACCCCAGGGAAGCCCTTACACATCAAGGTAACGCCAGACCATGGCCTCAACACGGCCATGCTGGATATCAGTAGCCCCACCACTGACAATGCCTTATCCTATACCAGCACCGCCGTCATCCCCACCAGCGGAGCCTCACCAAAACAGAGAATCACCATCATCCCAAATGCTGCCATCTCACCAGTGGCCAGAACAAAGAACACCCCACTATCAGAAGGGTTTGGCAGCCCAGACAgagtcctctcccctctcatcaaGACACCCGTCTCAGTCATGTCCCCAGCTTCCTCCAGATCAGTGTCGCCTGACCACATTGGCTCTCCCATCCAGATGCTAACAGTCAGCACTGGATCGCTTGAATCCGCTAAGGTCATAGGTCAAGCCGTATTCCGGGTGAGCCCGGAGAGGCAGAATGGTTGGCAGCTACAGAGGTCCGACAGCACTGGTCCGAGCATCATCACCACAGACGACAACAAGATCCACATCCACCTTGGGAGCCCCTACATCCAGTCTTTTAATGGTATAACCCAGAGCCAGTCTGGTGGCCCATACCACACCCCCGGGCTGGAGCTAAGGACACCAGTACTGACCAATGGCTGCCACGTCAAAGGCAACAGCAAGATCACCAGTAGCATCACCATAGCCCCTGCGAACACCCCTGTCTCACGACCCTCACACATTACAGTAAGTGGCCCGTATGATTGAAATGCCCGCCCCCGTCCAGCCCCTAGTGACTTAGATTGTTTACCCAATCCTGAGTCCCTTTCACCACAAAACCAACAGAGAATCAGCTCAAACCAGCCTATGTCTGAACGGCCACATCATCCTAATAATAAACAAGTGTGTGATTCCATCAGTGTTTGCATGAAAAAGCACTTATCAAACACATATCTAATCCTATCTGGACTTGGTCTGCACTCACTGTATATGGTCACCTTAATGCATTTAAGACTACTACTTACATATATAGCCTTTCATACGTTACTATAATGTGTGCATTACATTTTTAAACATGAAAAACAATTTGGTTTATTTTGTTGTTCCCATGTTGCCCATTCAATAAAGGGTATACATTCCTGAT

Function

NR:

description
filamin A-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579286.2 True 3328 mRNA 0.53 2 22990694 22996267

Neighbor

gene id symbol gene type direction distance location
LOC110502069 LOC106582011 coding downstream 354188 22239178 ~ 22636506 (-)
hecw2a LOC106581691 coding downstream 969340 21969152 ~ 22021354 (-)
stk17b LOC106581692 coding downstream 1032990 21936514 ~ 21957704 (-)
ftcdnl1 LOC106581695 coding downstream 1054280 21922800 ~ 21936414 (-)
LOC110501594 LOC106581696 coding downstream 1076973 21788428 ~ 21913721 (-)
LOC118943636 LOC106582008 coding upstream 27703 23023970 ~ 23042872 (-)
dcbld2 LOC106582006 coding upstream 60377 23056644 ~ 23079508 (-)
LOC110502006 LOC106582004 coding upstream 201499 23197766 ~ 23235688 (-)
LOC110502001 LOC106582154 coding upstream 302047 23298314 ~ 23327132 (-)
LOC110502000 LOC106582153 coding upstream 337329 23333596 ~ 23351721 (-)
G1789802 NA non-coding downstream 207644 22782723 ~ 22783050 (-)
G1789800 NA non-coding downstream 208096 22782384 ~ 22782598 (-)
G1789791 NA non-coding downstream 215418 22775038 ~ 22775276 (-)
G1789773 NA non-coding downstream 224627 22765753 ~ 22766067 (-)
G1790215 NA non-coding upstream 22354 23018621 ~ 23018841 (-)
G1790287 NA non-coding upstream 194470 23190737 ~ 23192377 (-)
G1790289 NA non-coding upstream 197553 23193820 ~ 23194168 (-)
G1790305 NA non-coding upstream 240968 23237235 ~ 23237520 (-)
G1790316 NA non-coding upstream 252725 23248992 ~ 23249257 (-)
G1789581 NA other downstream 571196 22418130 ~ 22419498 (-)
G1787166 NA other downstream 2534711 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 2644680 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 3331594 19655763 ~ 19666201 (-)
G1790280 NA other upstream 168214 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 436727 23368423 ~ 23460589 (-)
G1791405 NA other upstream 1330462 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 1852324 24848591 ~ 24849752 (-)
G1792345 NA other upstream 1860557 24856824 ~ 24857885 (-)

Expression


Co-expression Network