LOC118943636 (LOC106582008)


Basic Information

Item Value
gene id LOC118943636
gene name LOC106582008
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23023970 ~ 23042872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959585.1
CCACTCCATCCCTTCCATAAGGATCaaaccacacactctctctcacacacacatccccttCTCTTTCCTTCTATCTGGACCACTTGGAGAAAATGTAAGGACACAAAAGTGGGGGaaatagggaagagagagaaaagtgtaTCAAGGAATAGACAAACAGGGGACAAGAGgagagcagaagaagaagaagagtagGGGAGGACTTTATTGGATGACAGATAAGGGGAAGGAGTACCAGACTCAGACGGAGCAGCACAGCCGGACAGAATCACTTGTCTGCTCCATCAGTCCTGCAGGTGGATCCACAGATACGTTCCCGTAGCAACAGCCCCAACATGGCTGCCTGGAACAGTAATGGCTCACAGAACTCCGTGGCCCACCTCAACCCCCTCAAGGGCACCGTCCTGAGGGACAGCatggggggaggaaaggggggagagagggggaaagaccTGTCCAGGGATGACCTTGTGTTCCTCCTCAGTATAATGGAGGGAGAGCTGCAGGCCAGAGACGAGGTGATCACGTTCCTGAAAGCAGAGAAGATGGATTTGGCTCTGTTGGAGGCCCAGTATGGCTTTCTCACCCCAGTAGAAGTGCTCCGGGCcttgcagagagactcactccaGGCCCAGGCTTCTGAGGCCCAGGTGGCCCCACAGCAGGATGTCTACGAGAAACCCATGGTTGAGCTGGACCGGTTGGTGGAGACTGGAAAGCAGAGCTACAGGCGGATGCTGGAGCAGCTGCTGCAGGTGGAGTGCTCCCACAGTGGCGCCCTCTGCAGGCTGGAGGAGCAGGATCAGCAGCATCGTGCCTTCCTGCAACGCAGCGATGACCTCACCTGTCTACTGGAGCAGGACCGCGAGAGGTCAGTGACACCCACCAACCGCAACAGGACCCGTGTTGGAAATGCTACCTAG

Function

NR:

description
PREDICTED: filamin A-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959585.1 True 923 mRNA 0.56 4 23023970 23042872

Neighbor

gene id symbol gene type direction distance location
LOC110501602 LOC106582008 coding downstream 27703 22990694 ~ 22996267 (-)
LOC110502069 LOC106582011 coding downstream 387464 22239178 ~ 22636506 (-)
hecw2a LOC106581691 coding downstream 1002616 21969152 ~ 22021354 (-)
stk17b LOC106581692 coding downstream 1066266 21936514 ~ 21957704 (-)
ftcdnl1 LOC106581695 coding downstream 1087556 21922800 ~ 21936414 (-)
dcbld2 LOC106582006 coding upstream 13772 23056644 ~ 23079508 (-)
LOC110502006 LOC106582004 coding upstream 154894 23197766 ~ 23235688 (-)
LOC110502001 LOC106582154 coding upstream 255442 23298314 ~ 23327132 (-)
LOC110502000 LOC106582153 coding upstream 290724 23333596 ~ 23351721 (-)
LOC110502015 renr coding upstream 312056 23354928 ~ 23363406 (-)
G1790215 NA non-coding downstream 5129 23018621 ~ 23018841 (-)
G1789802 NA non-coding downstream 240920 22782723 ~ 22783050 (-)
G1789800 NA non-coding downstream 241372 22782384 ~ 22782598 (-)
G1789791 NA non-coding downstream 248694 22775038 ~ 22775276 (-)
G1789773 NA non-coding downstream 257903 22765753 ~ 22766067 (-)
G1790287 NA non-coding upstream 147865 23190737 ~ 23192377 (-)
G1790289 NA non-coding upstream 150948 23193820 ~ 23194168 (-)
G1790305 NA non-coding upstream 194363 23237235 ~ 23237520 (-)
G1790316 NA non-coding upstream 206120 23248992 ~ 23249257 (-)
G1790318 LOC106581475 non-coding upstream 207119 23249991 ~ 23250229 (-)
G1789581 NA other downstream 604472 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 1203025 21788428 ~ 21913721 (-)
G1787166 NA other downstream 2567987 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 2677956 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 3364870 19655763 ~ 19666201 (-)
G1790280 NA other upstream 121609 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 390122 23368423 ~ 23460589 (-)
G1791405 NA other upstream 1283857 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 1805719 24848591 ~ 24849752 (-)
G1792345 NA other upstream 1813952 24856824 ~ 24857885 (-)

Expression


Co-expression Network