Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110502028 |
| gene name | LOC106586704 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 23160350 ~ 23161012 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: protein jagunal homolog 1-A-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0007029 | endoplasmic reticulum organization | biological_process |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110502028 | True | 547 | mRNA | 0.54 | 2 | 23160350 | 23161012 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502004 | LOC106582005 | coding | upstream | 12846 | 23123886 ~ 23147504 (+) |
| LOC110502117 | NA | coding | upstream | 104607 | 23053038 ~ 23055743 (+) |
| LOC110501603 | NA | coding | upstream | 110146 | 23044616 ~ 23050204 (+) |
| LOC110501601 | LOC106581998 | coding | upstream | 924567 | 22233264 ~ 22235783 (+) |
| LOC118943635 | NA | coding | upstream | 1080521 | 22076377 ~ 22079829 (+) |
| LOC110502013 | tfg | coding | downstream | 3453 | 23164465 ~ 23190363 (+) |
| LOC110502031 | NA | coding | downstream | 472151 | 23633163 ~ 23635182 (+) |
| LOC110502002 | LOC100195685 | coding | downstream | 538608 | 23699620 ~ 23713577 (+) |
| LOC110502012 | LOC106582145 | coding | downstream | 630632 | 23791644 ~ 23799947 (+) |
| LOC110502020 | LOC106582143 | coding | downstream | 679886 | 23840898 ~ 23868839 (+) |
| G1789954 | NA | non-coding | upstream | 141431 | 23018680 ~ 23018919 (+) |
| G1789855 | NA | non-coding | upstream | 301287 | 22856966 ~ 22859063 (+) |
| G1789820 | NA | non-coding | upstream | 366650 | 22793445 ~ 22793700 (+) |
| G1789818 | NA | non-coding | upstream | 367196 | 22792511 ~ 22793154 (+) |
| G1790049 | NA | non-coding | downstream | 17479 | 23178491 ~ 23185240 (+) |
| G1790048 | NA | non-coding | downstream | 29725 | 23190737 ~ 23193691 (+) |
| G1790056 | NA | non-coding | downstream | 34201 | 23195213 ~ 23195955 (+) |
| G1790376 | NA | non-coding | downstream | 136196 | 23297208 ~ 23297426 (+) |
| G1790377 | NA | non-coding | downstream | 136455 | 23297467 ~ 23300506 (+) |
| G1788815 | LOC100136012 | other | upstream | 1160727 | 21998473 ~ 21999623 (+) |
| G1788811 | LOC106581691 | other | upstream | 1164257 | 21995364 ~ 21996093 (+) |
| G1787719 | NA | other | upstream | 2023873 | 21134265 ~ 21136477 (+) |
| G1786330 | NA | other | upstream | 2875779 | 20283181 ~ 20284571 (+) |
| asb1 | asb1 | other | upstream | 2878496 | 20269646 ~ 20281952 (+) |
| G1790442 | LOC106582152 | other | downstream | 255081 | 23416093 ~ 23432383 (+) |
| G1790805 | NA | other | downstream | 957550 | 24118562 ~ 24119475 (+) |
| LOC110501605 | LOC106582130 | other | downstream | 1233056 | 24394068 ~ 24423067 (+) |
| G1792040 | NA | other | downstream | 1681930 | 24842942 ~ 24843285 (+) |
| LOC110501609 | fam155a | other | downstream | 1687954 | 24848514 ~ 25013655 (+) |
