LOC110502001 (LOC106582154)


Basic Information

Item Value
gene id LOC110502001
gene name LOC106582154
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23298314 ~ 23327132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579884.2
tatttcacctttatttaaccaggtaggccagttgagcaCAAGTTGCCATTGTACTCTCCTGTAAGCTGACTTACAGGGGTTACATGACAGGTTTGGCAGTGGCATGACATTGGAGAGTGATACTGAGGTCAGGCATACAGGTACACAACATGCTAAACATGGAATCAGTTGACTGACCTGGCAGGGGTATGTACTGTACCACACTTAAATCTACACTGTGATCCACACATGAGCCAAGATGCTAGCTATGATTTACCTCAGGGGGTCACAGCTATAGAACTGGAGGGCCACAGCCTAGGGTGGTTTTCCTACCTGCTCATTGTCATCCTTAGAGAAAGTTTTCTACCAGGTGAATGGGTTCTTTCaccaatcagtgtgtgtgtgttttagtgtgtcaGGAGACGGTGTGGGAAGCCTTCAAGATTTTCTGGGACCGCCTCCCGAACCAGGAGGAGTACCAGACCTGGATGAGGCGGTGCCTGGACGGCACAACCACCGCTCTGGACATGGGCAACAACTTCAGCCAATCAGAGGAGCACCTGGCTCTGGTTGAGAGTAGAATGTCAGTGACGGAGTTAAAAAGGCAAGGCATCATATCCTGTTCACTTTATTTGCCATTGTAACCACTCTTTGTGCGTATTCACTGGGCAAGACCCTTGTATTTATtacatgtctcattcatttccCCATTGCTGTTTTCTCTACTTCTGTTCTATCAACTGTAGTGATGCCACCAACTCATGGTTACATATGTGCAGCACCCAGACTCCAGACACAGAACAGGAGGCTCAAGAGGTCGTCGGTGAGGTCCTCATAGAGGAGCCAGAGGCTGCGGAGGCGGGGCCTTCCAAAGAACCCACAAATGACATAGAGATGGATGTGTTGGCGCGGGTCCATCTGGAGCAGGTGGTGGAGCTGAGTATCCTGCtgaagggagagaggtacagcGATGCTCTCAGAGACCCTGCCAGTCTCCAGTACCAGACACTCAACCAGCAGTTCACTGACAAGATAAAGGATGCTGTGGGGGGACTGCCAGGCTTTAAGAGTGTGGCTGTGCTGCAGTTCAGGCTTCAGAAGGATGCCCAAGGGTtggatggtgtggtggtggtctATGCGGTGACAGTGGAGGTGGAAGGGGAGGGGGTGAGCAGTGACCAGCTGGACTACCTGACCCTGCAGTCCAATCTGGTGGAGAACTCCTAcagagaggtgaaggagaggaacTACATCACTGAGGCCCAGCACAAGGACAACATTATCAGTGATACAACTCTGGTCCTGGACCCTGACTCACTGCAACTATATACTGTGTCCAGTGTTACGGAGTCCTTTGAGCCCACCCATGGAATACCCGAGGATTACACCAACGGCAGTGTGGAGGACATTTTGGCTGTTGAGATGACTCCAACCGAAGTTGAAGCACAGGATGTAGCGACGGGGGAGAATGATGTCATTGTTGTAGAGGAGAACATGACCCTCCCCACTGAGGTGACCATCGATGACACAAGCATCGAGGAGGAGGTTCTGCTGTTGGGGAACACCGTGTCTACAGAGAGCCCTTTGTTGGAGGACCTCCCTACAGACCCTACCTCCCCTGAGCAGCCAAAGGGTGCTACGCTCCCCGAGCCTCCTCTGGAGATTGAGGCCTCTGGTTCAGGTCTTAAAGTACTGAAGGACTTGCACTTCCAGCCTGAGGAAGAAGAAGCCATAGAAGAAGAGCCAGCTCCAGAAGAGGAACTGACCATAGAAGAAAAGGTAGTTCCGGAAGAGGTAATCATCGAGGAAGATGTCCAAACAGAGGAAGCAGAAGTGGTGGTCTCCGAGGAAGATAAGGTAGAGGAGGAAGCTGGAGCCTCTGAAGACCTAGAGTACTCCATCATAGAGACGGAGACCATTGAAGAGGTTGAGGAAGAGGCCCCTGCCTTCGTCCCTGTGGAAATGATGGAAGCTCCCGAGCCAGTAGGGGGCCTCGGTGTCCCCGAGAATCCCCTTGCCATTGCGACTCTGCCCCCAGATGAACCTGAAGAGGAGACTAACGTGGTGCTGGCTTATCCAGAAATACCTGAATATGGAGAGGAAATTGAGAGCTTAGAGGGACCAATCATTGAGAAGCCATTAACTAAAGTGGATGCTGTGGAAGTGGAGGAAGAGGTGGCAGAAGAAGTGGTCGTTGAAGTTCCGGACATTTCTGAGATCTCGGAGGAGGACTTGGTAGAAGACGAGATCTTATTGGTCGATGAGGCTGCTCCGGACGCCACCcacaccacccctctctctgcgGAGAAAGAGTCACCCTTCACCCGAGTCTCTGATTTCATAGTATTGGAGGAGGTTACAGAGGCCACAGCCCTGGACACAGCCCCAGAACCAGAGGCAGAACAGGAGGACCAAGGGGTCACCCCAGCTCTCATACCCGCCGAGTACCACCCTGATCCCGACATTTCTATCACTCTGGAGCTGCAGACGATCGACCCTGTGACAGACTATGACCTGGTCCACTTCGGCGGGACAAACCAAACAGAGGAAGGGAGCAGTGGGTACCCTTCTGGAGTGGTAAATGGTACAGACCACAGCATTGCCATGCCAATCAACCCTGGGCGGGCTCTGATGGTGTTCTTCAGGCTGAGGGTCACCAACATGATGTTCTCAGATGACCTCTTCAATAAGAGCTCCGCAGAATACAAGGCCCTAGAACAAAGGTTCCTCGAGCTGCTGGTCCCCTACCTCCAGTCCAACCTTACTAACTTCCAGAATCTGGAGATCCTGAACTTCCGGAATGGGAGTATCGTGGTCAACAGCCGGATGAAGTTCGGGAGGCCGATGCCTCGCGGCGTCAACAATGCAGTCTACTTGATCCTGGAAGACTTCGCTAACACAGCCTACCAAACTATGAACCTGGCCATCGACAAGTACTCACTGGATGTAGAGTCAGGTGACCAGGCCAACCCCTGTAAGTTCCAGGCGTGTAATGAGTTTGCCCAGTGCTCTGTGAACCGCTGGTCTAGCGAggcggagtgtgtgtgtaatgctgGCTACTTCAGCGTGGAAGGTCTGCCCTGTCAGAGCATCTGTGAACTGCAGACAGACTTCTGTATGAACGACGGGAAGTGTGACATCATACCTGGACAGGGGGCCATCtgcagATGTCGTGTAGGGGAGAACTGGTGGTACCGTGGAGAACACTGTGAGGAGTATGTGTCAGAACCTCTGGTGGTCGGCATAGCGATAGCCTCTGTAGCAGGTTTCCTATTGGTGGCATCTGGTGTGATCTTCTTCCTGGCGAGGACACTACGGGATCAGTACGATAAGGATGAGGCTGAGGACCCCATACGgCGAGGGGAGAGTATCCCGTCTCTAGAGAGGGCCACTAAGTACAACCCCATGTATGAGAGTGAGGCCACGACGGGCTACAGCCACTACTACCGCCGCTACCCAGAAGCCCCGGTCTACAGCAGCGCCAGCGCCGAGGCCTCCACAGACTTCAGCAGTGAGGAGATACGCCACATCTACGAGAACAGCGAACTGACCaaggagGAAATCCAGGACAGGATACGCATCATCGAACTCTATGCGAAGGACCGGCAGTTTGCAGACTTTGTGCGGCAGCATCAAACTGCCCTGGATACACGCAGACAGAGCACCCTTGATAAACGCAGAGAGAGCACGTCCACGTAGCCCAGTATGGGACACTCAGCTGTATGCTGGACAACAAGgaAGGAGTTGGAGTTTGTTTTCTGTAGGGAAAAAAAGTAttacaagagagagggagagtgggagagggggagagattttGCTGAAGGACCAAAATATAAGTGAAAACACATTTTGAATGGAAACAATCTTCAAGGGGATTTGATCAGGCAGTCTGTTTCCAGATATGTGTTAGAAAACATTCAAGAAAGTACATCAAATGTACATGCGTAAACAACATGTGCTCTGTGGATAAGCAAACTCTTAGCAGCGGcttttaaatcaaataaaaatgaacCAGAAACGTGAAAATGGTCCATTCTGTAACCACTAGTTTGGAAACCATCCTTGCTTTACCCTGTACGTATTTCACATGAAGAGGACTGGTTTCCAGTGAATCCTCAAAGTTGCATTTCCTCCTGCTGTAGGTTTACTTTTCCACATTTGTTTTGACTGTGAATAGTCATAGGAAATCATAAGAATACACAGGTTGAACTCAAATGCCAAcatattccctatagtgcactacttgcctaaagtagtgcactatacagattAAAGTGTCCATTTGAGATGTGCCCACAGACATTTAAGATGTTTCCTGATTTAGGTTTACATTTCATGTTATCCTGTCCTTTTCTCTCAGGCTCCTGTATGGCTCCACACAAGCGAGAACACGGGTTACTGTGGTTGAACACAAGCTTACCTTCCACTTATGATATCGTCATGCCTTTTTCAATCTGTGTGTTCGTTTTCATACACATTTTCTGGTGTGCATAAACTGGTTTTCTCAACATTCTCTTCCTTCATCGGGACTCATAGCCAATGGGATGGATCCAGAACGCTGTCATGTAAATACTATCCGAGTATTGTGGTATGTTCTTTACACTAGAATGTCAACGGAATGCGCTTGACATGTTGACATGTTTTGTTGTACAAAATGATGATTATTTTTTAACGTAAGCACTGGTGGATATTTAAACAAATATTACATTACTACTTGCAGTTATGTCAATGTttattcttaaaatgaagcaatAAATAAAAAGACCCGTTTTCTAC
>XM_036959545.1
ctctcgtccACGTTTCTCTCGCACTAAGCACCAATCCCAGTATTACACCAGTAACGTCTTAACAAGCTGCTCTAAAGGGCTTAGCCAACAAGATTAGGGAgcaaaaaaaaatctctctcATTGGGCCATCTGCCTACCTGTGGCCGCGAGCTGTTCTTCAGCACCACACCTTCCTCAGCCCACGGaagaaaggaggaaaggaggcCATCACTTTATTTTTCCTAgacctacacctgcattgcttgctgtttggggttttaggctgggtttctgtgcagcactttgagatatcagctgatgtaagaagggctttataaataaatgtgatttgacttTATCTAATCACTTCATAATTATTGGTGAGGGACTGATGCGTTTGCTGGATTTTGAACTATGCAATCTCGTAAGGAGGGACTAATACCATTTTTCAACCCCTCTGAGTTAAAACTACTACGGATTTAAGATGTCGGACTCTTTATTGAAATTTATTTTGTGTACACTTCCGTTCATTTTAGCGTTCGCACTTTTGGGAATAAGAACAGGTATGTAtttatgtaggtaggtaggactaaTAAATAATCAATGTACACATCAATCTACTGCAATTTCAGATGGAGTTGTTGTCCAATGTTATCCTTTTAATGTTTTACCACAGATGCTGCATCTGGAGAAGGACCTATTCTTCCTGATGGACAGGATCTTTATTTCAAAATAGTTGGCATTTCACCCATTCTATCAGTTCCTCAAAGCATAGTTCATTCACCTGTCCTCAAGGTTTCAAACAAGGACCATGGAGCTACCCACCGGCAGAAGCGCAATGTCCTTTTCCCCAGCGGGGTCAAACTCTGCGGGCAGGAGAGTGTGCAACAAGCCATCGCAAATCATCTCAGCTACTTTCACCTTCGAGtgtgtcaGGAGACGGTGTGGGAAGCCTTCAAGATTTTCTGGGACCGCCTCCCGAACCAGGAGGAGTACCAGACCTGGATGAGGCGGTGCCTGGACGGCACAACCACCGCTCTGGACATGGGCAACAACTTCAGCCAATCAGAGGAGCACCTGGCTCTGGTTGAGAGTAGAATGTCAGTGACGGAGTTAAAAAGGCAAGGCATCATATCCTGTTCACTTTATTTGCCATTGTAACCACTCTTTGTGCGTATTCACTGGGCAAGACCCTTGTATTTATtacatgtctcattcatttccCCATTGCTGTTTTCTCTACTTCTGTTCTATCAACTGTAGTGATGCCACCAACTCATGGTTACATATGTGCAGCACCCAGACTCCAGACACAGAACAGGAGGCTCAAGAGGTCGTCGGTGAGGTCCTCATAGAGGAGCCAGAGGCTGCGGAGGCGGGGCCTTCCAAAGAACCCACAAATGACATAGAGATGGATGTGTTGGCGCGGGTCCATCTGGAGCAGGTGGTGGAGCTGAGTATCCTGCtgaagggagagaggtacagcGATGCTCTCAGAGACCCTGCCAGTCTCCAGTACCAGACACTCAACCAGCAGTTCACTGACAAGATAAAGGATGCTGTGGGGGGACTGCCAGGCTTTAAGAGTGTGGCTGTGCTGCAGTTCAGGCTTCAGAAGGATGCCCAAGGGTtggatggtgtggtggtggtctATGCGGTGACAGTGGAGGTGGAAGGGGAGGGGGTGAGCAGTGACCAGCTGGACTACCTGACCCTGCAGTCCAATCTGGTGGAGAACTCCTAcagagaggtgaaggagaggaacTACATCACTGAGGCCCAGCACAAGGACAACATTATCAGTGATACAACTCTGGTCCTGGACCCTGACTCACTGCAACTATATACTGTGTCCAGTGTTACGGAGTCCTTTGAGCCCACCCATGGAATACCCGAGGATTACACCAACGGCAGTGTGGAGGACATTTTGGCTGTTGAGATGACTCCAACCGAAGTTGAAGCACAGGATGTAGCGACGGGGGAGAATGATGTCATTGTTGTAGAGGAGAACATGACCCTCCCCACTGAGGTGACCATCGATGACACAAGCATCGAGGAGGAGGTTCTGCTGTTGGGGAACACCGTGTCTACAGAGAGCCCTTTGTTGGAGGACCTCCCTACAGACCCTACCTCCCCTGAGCAGCCAAAGGGTGCTACGCTCCCCGAGCCTCCTCTGGAGATTGAGGCCTCTGGTTCAGGTCTTAAAGTACTGAAGGACTTGCACTTCCAGCCTGAGGAAGAAGAAGCCATAGAAGAAGAGCCAGCTCCAGAAGAGGAACTGACCATAGAAGAAAAGGTAGTTCCGGAAGAGGTAATCATCGAGGAAGATGTCCAAACAGAGGAAGCAGAAGTGGTGGTCTCCGAGGAAGATAAGGTAGAGGAGGAAGCTGGAGCCTCTGAAGACCTAGAGTACTCCATCATAGAGACGGAGACCATTGAAGAGGTTGAGGAAGAGGCCCCTGCCTTCGTCCCTGTGGAAATGATGGAAGCTCCCGAGCCAGTAGGGGGCCTCGGTGTCCCCGAGAATCCCCTTGCCATTGCGACTCTGCCCCCAGATGAACCTGAAGAGGAGACTAACGTGGTGCTGGCTTATCCAGAAATACCTGAATATGGAGAGGAAATTGAGAGCTTAGAGGGACCAATCATTGAGAAGCCATTAACTAAAGTGGATGCTGTGGAAGTGGAGGAAGAGGTGGCAGAAGAAGTGGTCGTTGAAGTTCCGGACATTTCTGAGATCTCGGAGGAGGACTTGGTAGAAGACGAGATCTTATTGGTCGATGAGGCTGCTCCGGACGCCACCcacaccacccctctctctgcgGAGAAAGAGTCACCCTTCACCCGAGTCTCTGATTTCATAGTATTGGAGGAGGTTACAGAGGCCACAGCCCTGGACACAGCCCCAGAACCAGAGGCAGAACAGGAGGACCAAGGGGTCACCCCAGCTCTCATACCCGCCGAGTACCACCCTGATCCCGACATTTCTATCACTCTGGAGCTGCAGACGATCGACCCTGTGACAGACTATGACCTGGTCCACTTCGGCGGGACAAACCAAACAGAGGAAGGGAGCAGTGGGTACCCTTCTGGAGTGGTAAATGGTACAGACCACAGCATTGCCATGCCAATCAACCCTGGGCGGGCTCTGATGGTGTTCTTCAGGCTGAGGGTCACCAACATGATGTTCTCAGATGACCTCTTCAATAAGAGCTCCGCAGAATACAAGGCCCTAGAACAAAGGTTCCTCGAGCTGCTGGTCCCCTACCTCCAGTCCAACCTTACTAACTTCCAGAATCTGGAGATCCTGAACTTCCGGAATGGGAGTATCGTGGTCAACAGCCGGATGAAGTTCGGGAGGCCGATGCCTCGCGGCGTCAACAATGCAGTCTACTTGATCCTGGAAGACTTCGCTAACACAGCCTACCAAACTATGAACCTGGCCATCGACAAGTACTCACTGGATGTAGAGTCAGGTGACCAGGCCAACCCCTGTAAGTTCCAGGCGTGTAATGAGTTTGCCCAGTGCTCTGTGAACCGCTGGTCTAGCGAggcggagtgtgtgtgtaatgctgGCTACTTCAGCGTGGAAGGTCTGCCCTGTCAGAGCATCTGTGAACTGCAGACAGACTTCTGTATGAACGACGGGAAGTGTGACATCATACCTGGACAGGGGGCCATCtgcagATGTCGTGTAGGGGAGAACTGGTGGTACCGTGGAGAACACTGTGAGGAGTATGTGTCAGAACCTCTGGTGGTCGGCATAGCGATAGCCTCTGTAGCAGGTTTCCTATTGGTGGCATCTGGTGTGATCTTCTTCCTGGCGAGGACACTACGGGATCAGTACGATAAGGATGAGGCTGAGGACCCCATACGgCGAGGGGAGAGTATCCCGTCTCTAGAGAGGGCCACTAAGTACAACCCCATGTATGAGAGTGAGGCCACGACGGGCTACAGCCACTACTACCGCCGCTACCCAGAAGCCCCGGTCTACAGCAGCGCCAGCGCCGAGGCCTCCACAGACTTCAGCAGTGAGGAGATACGCCACATCTACGAGAACAGCGAACTGACCaaggagGAAATCCAGGACAGGATACGCATCATCGAACTCTATGCGAAGGACCGGCAGTTTGCAGACTTTGTGCGGCAGCATCAAACTGCCCTGGATACACGCAGACAGAGCACCCTTGATAAACGCAGAGAGAGCACGTCCACGTAGCCCAGTATGGGACACTCAGCTGTATGCTGGACAACAAGGCTCCTGTATGGCTCCACACAAGCGAGAACACGGGTTACTGTGGTTGAACACAAGCTTACCTTCCACTTATGATATCGTCATGCCTTTTTCAATCTGTGTGTTCGTTTTCATACACATTTTCTGGTGTGCATAAACTGGTTTTCTCAACATTCTCTTCCTTCATCGGGACTCATAGCCAATGGGATGGATCCAGAACGCTGTCATGTAAATACTATCCGAGTATTGTGGTATGTTCTTTACACTAGAATGTCAACGGAATGCGCTTGACATGTTGACATGTTTTGTTGTACAAAATGATGATTATTTTTTAACGTAAGCACTGGTGGATATTTAAACAAATATTACATTACTACTTGCAGTTATGTCAATGTttattcttaaaatgaagcaatAAATAAAAAGACCCGTTTTCTAC

Function

NR:

description
interphotoreceptor matrix proteoglycan 2-like

GO: NA

KEGG:

id description
K19017 IMPG2, SPACRCAN; interphotoreceptor matrix proteoglycan 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579884.2 False 4755 mRNA 0.50 17 23298314 23324737
XM_036959545.1 True 4649 mRNA 0.50 18 23298314 23327132

Neighbor

gene id symbol gene type direction distance location
LOC110502006 LOC106582004 coding downstream 62626 23197766 ~ 23235688 (-)
dcbld2 LOC106582006 coding downstream 218806 23056644 ~ 23079508 (-)
LOC118943636 LOC106582008 coding downstream 255442 23023970 ~ 23042872 (-)
LOC110501602 LOC106582008 coding downstream 302047 22990694 ~ 22996267 (-)
LOC110502069 LOC106582011 coding downstream 661808 22239178 ~ 22636506 (-)
LOC110502000 LOC106582153 coding upstream 6464 23333596 ~ 23351721 (-)
LOC110502015 renr coding upstream 27796 23354928 ~ 23363406 (-)
LOC110501997 LOC106582152 coding upstream 41291 23368423 ~ 23460589 (-)
si:dkey-100n23.5 LOC106582150 coding upstream 149806 23476938 ~ 23578992 (-)
LOC110502029 g12 coding upstream 256315 23583447 ~ 23585473 (-)
G1790320 NA non-coding downstream 46598 23251493 ~ 23251716 (-)
G1790319 NA non-coding downstream 47238 23250788 ~ 23251076 (-)
G1790318 LOC106581475 non-coding downstream 48085 23249991 ~ 23250229 (-)
G1790316 NA non-coding downstream 49057 23248992 ~ 23249257 (-)
G1790305 NA non-coding downstream 60794 23237235 ~ 23237520 (-)
G1790951 NA non-coding upstream 66262 23393394 ~ 23394736 (-)
G1790982 NA non-coding upstream 138255 23465387 ~ 23465759 (-)
G1790983 NA non-coding upstream 139005 23466137 ~ 23466405 (-)
G1790989 NA non-coding upstream 143241 23470373 ~ 23470595 (-)
G1790990 NA non-coding upstream 143952 23471084 ~ 23471411 (-)
G1790280 NA other downstream 128951 23164481 ~ 23169363 (-)
G1789581 NA other downstream 878816 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 1477369 21788428 ~ 21913721 (-)
G1787166 NA other downstream 2842331 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 2952300 20345699 ~ 20346014 (-)
G1791405 NA other upstream 999597 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 1521459 24848591 ~ 24849752 (-)
G1792345 NA other upstream 1529692 24856824 ~ 24857885 (-)
G1792433 NA other upstream 1658827 24985959 ~ 24986268 (-)

Expression


Co-expression Network