Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110501997 |
| gene name | LOC106582152 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 23368423 ~ 23460589 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| interphotoreceptor matrix proteoglycan 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036959539.1 | False | 8298 | mRNA | 0.54 | 15 | 23368423 | 23460586 |
| XM_036959541.1 | False | 8156 | mRNA | 0.54 | 14 | 23368423 | 23460586 |
| XM_036959540.1 | False | 8242 | mRNA | 0.54 | 14 | 23368423 | 23460587 |
| XM_036959542.1 | False | 8019 | mRNA | 0.54 | 14 | 23368423 | 23460589 |
| TU2049906 | True | 944 | TUCP | 0.48 | 3 | 23432994 | 23460360 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502015 | renr | coding | downstream | 5017 | 23354928 ~ 23363406 (-) |
| LOC110502000 | LOC106582153 | coding | downstream | 16702 | 23333596 ~ 23351721 (-) |
| LOC110502001 | LOC106582154 | coding | downstream | 41291 | 23298314 ~ 23327132 (-) |
| LOC110502006 | LOC106582004 | coding | downstream | 132735 | 23197766 ~ 23235688 (-) |
| dcbld2 | LOC106582006 | coding | downstream | 288915 | 23056644 ~ 23079508 (-) |
| si:dkey-100n23.5 | LOC106582150 | coding | upstream | 16349 | 23476938 ~ 23578992 (-) |
| LOC110502029 | g12 | coding | upstream | 122858 | 23583447 ~ 23585473 (-) |
| LOC110502021 | LOC106582149 | coding | upstream | 146841 | 23607430 ~ 23618048 (-) |
| LOC110502018 | LOC106582148 | coding | upstream | 278017 | 23738606 ~ 23763120 (-) |
| LOC110502024 | LOC106582147 | coding | upstream | 315475 | 23776064 ~ 23788613 (-) |
| G1790931 | NA | non-coding | downstream | 52188 | 23315885 ~ 23316235 (-) |
| G1790926 | NA | non-coding | downstream | 59129 | 23308853 ~ 23309294 (-) |
| G1790320 | NA | non-coding | downstream | 116707 | 23251493 ~ 23251716 (-) |
| G1790319 | NA | non-coding | downstream | 117347 | 23250788 ~ 23251076 (-) |
| G1790318 | LOC106581475 | non-coding | downstream | 118194 | 23249991 ~ 23250229 (-) |
| G1790982 | NA | non-coding | upstream | 4798 | 23465387 ~ 23465759 (-) |
| G1790983 | NA | non-coding | upstream | 5548 | 23466137 ~ 23466405 (-) |
| G1790989 | NA | non-coding | upstream | 9784 | 23470373 ~ 23470595 (-) |
| G1790990 | NA | non-coding | upstream | 10495 | 23471084 ~ 23471411 (-) |
| G1790992 | NA | non-coding | upstream | 11671 | 23472260 ~ 23472510 (-) |
| G1790280 | NA | other | downstream | 199060 | 23164481 ~ 23169363 (-) |
| G1789581 | NA | other | downstream | 948925 | 22418130 ~ 22419498 (-) |
| LOC110501594 | LOC106581696 | other | downstream | 1547478 | 21788428 ~ 21913721 (-) |
| G1787166 | NA | other | downstream | 2912440 | 20390516 ~ 20455983 (-) |
| G1786832 | LOC100136012 | other | downstream | 3022409 | 20345699 ~ 20346014 (-) |
| G1791405 | NA | other | upstream | 866140 | 24326729 ~ 24327127 (-) |
| G1792342 | LOC106582127 | other | upstream | 1388002 | 24848591 ~ 24849752 (-) |
| G1792345 | NA | other | upstream | 1396235 | 24856824 ~ 24857885 (-) |
| G1792433 | NA | other | upstream | 1525370 | 24985959 ~ 24986268 (-) |
| LOC110501627 | LOC106582113 | other | upstream | 2249984 | 25709599 ~ 25744218 (-) |
| G1790951 | NA | non-coding | downstream | 38258 | 23393394 ~ 23394736 (-) |
| G1790939 | NA | non-coding | downstream | 47702 | 23321352 ~ 23385292 (-) |
