si:dkey-100n23.5 (LOC106582150)


Basic Information

Item Value
gene id si:dkey-100n23.5
gene name LOC106582150
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23476938 ~ 23578992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959564.1
CTTAGCCgtgcactgtagctagctaggaAGTTGATGTCATCAAATTTCACATGATGTGTAGTGACGTCCAAACATCAAAACATTGCTAGCAAATTGTAAAAAGAAATGGATAGTAACAATATAATTCCATTAAATAACGACAGTAGACGCTGTATTTTCTTTAATACAGATTCTGACGACTATCGATGTGTGGTGATTCTCACAGTGAAGCGAGCCACAGGCACCTTCTCACTGATAGGATGCTTTTTCATGCTGTTTGTAATCTGGCTTCTCCGCCGGTATCACTCCTTGGCCCagaaGATGATTTGCAGTCTGACAGTTGCGGCCTTCTTTGACAGTGTAGCGTATGTCATCGGTGATACCCATCCAGAGGGGAGTCTGTGTAACTTCCAGGCCTGGTGGCTCACTTATTTTGACTGGAGTGCCTTGGCCTGGGTGTGCCTGATCACAGTGAACCTCTACCTTAACCTGGTCAAAGAGATGAGCACCAGCCGCTATGAGCTACTGTACCACCTGATGGCCTGGGGGGTGCCCCTGGTGATGGCCTCCCTGCCCCTGTTCAGTGGATACTACGGCCCAGCAGGAGCCTGGTGctggATCACAGGCAACCACGTAGCTTGGAGATTTGGGATATGGTACGTCCCACTCTTCACCCTCATCTTCCTCATGATCTGCTGTTACGCCAGAATAATCTACGTAGCCAATGAGAGGATGCAGTCGTGGTTTGGCACCTTCaacccagagagggagaggagaaaggtgTCTTTGGCTGAGGAGATAAAGCCGTTGAAGTGGTATCCATCCGTTTATCTCCTGGtgtctctgttccccctcatcaacagGCTCCATAATGTGTTCTACCCCCAGGATCCAGTGTTCTCTCTTACTTTGCTCCATGTCCTTTCAGCCCCTCTCCATGGCTTGGCCAACGCATTCGTCTTTGGCCTGGACAGAGACACCTGGAGCCAGCTCAGTCCTACAGGCATACAGTTGGCGCTGCAATCTCGGCTGTGTGACAGGACGCGTATCAGGGAGTACCATCCTGGGGCGGTGCACTACACACAGGCTGAGCTGGGGGACTTCAGTGACGAGGATGATGATGACACCAACGTCCTTTTCTACTCCCCTGACATGACCCTGAAAGACAGaggaccctgagagagagagagagagagagagaga
>XM_036959563.1
CCTTAGCCgtgcactgtagctagctaggaAGTTGATGTCATCAAATTTCACATGATGTGTAGTGACGTCCAAACATCAAAACATTGCTAGCAAATTGTAAAAAGAAATGGATAGTAACAATATAATTCCATTAAATAACGACAGTAGACGCTGTATTTTCTTTAATACAGATTCTGACGACTATCGATGTGTGGTGATTCTCACAGTGAAGCGAGCCACAGGCACCTTCTCACTGATAGGATGCTTTTTCATGCTGTTTGTAATCTGGCTTCTCCGCCGGTATCACTCCTTGGCCCagaaGATGATTTGCAGTCTGACAGTTGCGGCCTTCTTTGACAGTGTAGCGTATGTCATCGGTGATACCCATCCAGAGGGGAGTCTGTGTAACTTCCAGGCCTGGTGGCTCACTTATTTTGACTGGAGTGCCTTGGCCTGGGTGTGCCTGATCACAGTGAACCTCTACCTTAACCTGGTCAAAGAGATGAGCACCAGCCGCTATGAGCTACTGTACCACCTGATGGCCTGGGGGGTGCCCCTGGTGATGGCCTCCCTGCCCCTGTTCAGTGGATACTACGGCCCAGCAGGAGCCTGGTGctggATCACAGGCAACCACGTAGCTTGGAGATTTGGGATAGCAGGGCTGGAGAGCTTCTCGAGCTGCAGGATGGCGTGTGGGTGTACATGTTTATGGTACGTCCCACTCTTCACCCTCATCTTCCTCATGATCTGCTGTTACGCCAGAATAATCTACGTAGCCAATGAGAGGATGCAGTCGTGGTTTGGCACCTTCaacccagagagggagaggagaaaggtgTCTTTGGCTGAGGAGATAAAGCCGTTGAAGTGGTATCCATCCGTTTATCTCCTGGtgtctctgttccccctcatcaacagGCTCCATAATGTGTTCTACCCCCAGGATCCAGTGTTCTCTCTTACTTTGCTCCATGTCCTTTCAGCCCCTCTCCATGGCTTGGCCAACGCATTCGTCTTTGGCCTGGACAGAGACACCTGGAGCCAGCTCAGTCCTACAGGCATACAGTTGGCGCTGCAATCTCGGCTGTGTGACAGGACGCGTATCAGGGAGTACCATCCTGGGGCGGTGCACTACACACAGGCTGAGCTGGGGGACTTCAGTGACGAGGATGATGATGACACCAACGTCCTTTTCTACTCCCCTGACATGACCCTGAAAGACAGaggaccctgagagagagagagagagagagagaga
>XM_036959566.1
CCTTAGCCgtgcactgtagctagctaggaAGTTGATGTCATCAAATTTCACATGATGTGTAGTGACGTCCAAACATCAAAACATTGCTAGCAAATTGTAAAAAGAAATGGATAGTAACAATATAATTCCATTAAATAACGACAGTAGACGCTGTATTTTCTTTAATACAGATTCTGACGACTATCGATGTGTGGTGATTCTCACAGTGAAGCGAGCCACAGGCACCTTCTCACTGATAGGATGCTTTTTCATGCTGTTTGTAATCTGGCTTCTCCGCCGGTATCACTCCTTGGCCCagaaGATGATTTGCAGTCTGACAGTTGCGGCCTTCTTTGACAGTGTAGCGTATGTCATCGGTGATACCCATCCAGAGGGGAGTCTGTGTAACTTCCAGGCCTGGTGGCTCACTTATTTTGACTGGAGTGCCTTGGCCTGGGTGTGCCTGATCACAGTGAACCTCTACCTTAACCTGGTCAAAGAGATGAGCACCAGCCGCTATGAGCTACTGTACCACCTGATGGCCTGGGGGGTGCCCCTGGTGATGGCCTCCCTGCCCCTGTTCAGTGGATACTACGGCCCAGCAGGAGCCTGGTGctggATCACAGGCAACCACGTAGCTTGGAGATTTGGGATATGGTACGTCCCACTCTTCACCCTCATCTTCCTCATGATCTGCTGTTACGCCAGAATAATCTACGTAGCCAATGAGAGGATGCAGTCGTGGTTTGGCACCTTCaacccagagagggagaggagaaaggtgTCTTTGGCTGAGGAGATAAAGCCGTTGAAGTGGTATCCATCCGTTTATCTCCTGGtgtctctgttccccctcatcaacagCCCCTCTCCATGGCTTGGCCAACGCATTCGTCTTTGGCCTGGACAGAGACACCTGGAGCCAGCTCAGTCCTACAGGCATACAGTTGGCGCTGCAATCTCGGCTGTGTGACAGGACGCGTATCAGGGAGTACCATCCTGGGGCGGTGCACTACACACAGGCTGAGCTGGGGGACTTCAGTGACGAGGATGATGATGACACCAACGTCCTTTTCTACTCCCCTGACATGACCCTGAAAGACAGag
>XM_036959565.1
TCCTTAGCCgtgcactgtagctagctaggaAGTTGATGTCATCAAATTTCACATGATGTGTAGTGACGTCCAAACATCAAAACATTGCTAGCAAATTGTAAAAAGAAATGGATAGTAACAATATAATTCCATTAAATAACGACAGTAGACGCTGTATTTTCTTTAATACAGATTCTGACGACTATCGATGTGTGGTGATTCTCACAGTGAAGCGAGCCACAGGCACCTTCTCACTGATAGGATGCTTTTTCATGCTGTTTGTAATCTGGCTTCTCCGCCGGTATCACTCCTTGGCCCagaaGATGATTTGCAGTCTGACAGTTGCGGCCTTCTTTGACAGTGTAGCGTATGTCATCGGTGATACCCATCCAGAGGGGAGTCTGTGTAACTTCCAGGCCTGGTGGCTCACTTATTTTGACTGGAGTGCCTTGGCCTGGGTGTGCCTGATCACAGTGAACCTCTACCTTAACCTGGTCAAAGAGATGAGCACCAGCCGCTATGAGCTACTGTACCACCTGATGGCCTGGGGGGTGCCCCTGGTGATGGCCTCCCTGCCCCTGTTCAGTGGATACTACGGCCCAGCAGGAGCCTGGTGctggATCACAGGCAACCACGTAGCTTGGAGATTTGGGATAGCAGGGCTGGAGAGCTTCTCGAGCTGCAGGATGGCGTGTGGGTGTACATGTTTATGGTACGTCCCACTCTTCACCCTCATCTTCCTCATGATCTGCTGTTACGCCAGAATAATCTACGTAGCCAATGAGAGGATGCAGTCGTGGTTTGGCACCTTCaacccagagagggagaggagaaaggtgTCTTTGGCTGAGGAGATAAAGCCGTTGAAGTGGTATCCATCCGTTTATCTCCTGGtgtctctgttccccctcatcaacagCCCCTCTCCATGGCTTGGCCAACGCATTCGTCTTTGGCCTGGACAGAGACACCTGGAGCCAGCTCAGTCCTACAGGCATACAGTTGGCGCTGCAATCTCGGCTGTGTGACAGGACGCGTATCAGGGAGTACCATCCTGGGGCGGTGCACTACACACAGGCTGAGCTGGGGGACTTCAGTGACGAGGATGATGATGACACCAACGTCCTTTTCTACTCCCCTGACATGACCCTGAAAGACAGag

Function

NR:

description
cyclic AMP receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959564.1 False 1182 mRNA 0.51 13 23476938 23578990
XM_036959563.1 False 1237 mRNA 0.51 14 23476938 23578991
XM_036959566.1 False 1086 mRNA 0.51 13 23476970 23578991
XM_036959565.1 True 1141 mRNA 0.51 14 23476970 23578992

Neighbor

gene id symbol gene type direction distance location
LOC110501997 LOC106582152 coding downstream 16349 23368423 ~ 23460589 (-)
LOC110502015 renr coding downstream 113532 23354928 ~ 23363406 (-)
LOC110502000 LOC106582153 coding downstream 125217 23333596 ~ 23351721 (-)
LOC110502001 LOC106582154 coding downstream 149806 23298314 ~ 23327132 (-)
LOC110502006 LOC106582004 coding downstream 241250 23197766 ~ 23235688 (-)
LOC110502029 g12 coding upstream 4455 23583447 ~ 23585473 (-)
LOC110502021 LOC106582149 coding upstream 28438 23607430 ~ 23618048 (-)
LOC110502018 LOC106582148 coding upstream 159614 23738606 ~ 23763120 (-)
LOC110502024 LOC106582147 coding upstream 197072 23776064 ~ 23788613 (-)
appb LOC106582144 coding upstream 224585 23803577 ~ 23835647 (-)
G1790932 NA non-coding downstream 928 23474836 ~ 23476010 (-)
G1790934 NA non-coding downstream 2173 23472645 ~ 23474765 (-)
G1790992 NA non-coding downstream 4428 23472260 ~ 23472510 (-)
G1790990 NA non-coding downstream 5527 23471084 ~ 23471411 (-)
G1790989 NA non-coding downstream 6343 23470373 ~ 23470595 (-)
G1791047 NA non-coding upstream 16130 23595122 ~ 23595338 (-)
G1791063 NA non-coding upstream 41588 23620580 ~ 23620880 (-)
G1791068 NA non-coding upstream 47718 23626710 ~ 23627228 (-)
G1791081 NA non-coding upstream 73730 23652722 ~ 23653454 (-)
G1791083 NA non-coding upstream 76263 23655255 ~ 23655455 (-)
G1790280 NA other downstream 307575 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1057440 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 1655993 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3020955 20390516 ~ 20455983 (-)
G1791405 NA other upstream 747737 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 1269599 24848591 ~ 24849752 (-)
G1792345 NA other upstream 1277832 24856824 ~ 24857885 (-)
G1792433 NA other upstream 1406967 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 2131581 25709599 ~ 25744218 (-)

Expression


Co-expression Network