LOC110502021 (LOC106582149)


Basic Information

Item Value
gene id LOC110502021
gene name LOC106582149
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23607430 ~ 23618048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579927.2
GAATGTCCTCCAGCGGAGAGTCATGGTAGCGCAAGGTTTGCAGAAACCTCCTTTTCAGTTTACTGTGGTATGGCATTGGGCATAATGGAGACCAAACCAGTGATAACCTTTCTCAAAACCCTCCTCATCGTTTACTCCTTCGTATTTTGGATCACAGGAGCGATCCTCTTGGCAGTGGGAGTATGGGGGAAGTTTATGCTGGGCCCTTATATCTCTCTGATAGCTGAGAACACCACCAATGCTCCATACGTCCTCATCGGCACTGGGACTGTTATCATCGTCTTCGGCCTGTTCGGATGCTTCGCCACCTGCAGGGGGAGCCCATGGATGCTCAAACtgtATGCAATGTTCTTGTCCCTGGTGTTCCTAGCTGAGTTGGTGGCTGGGATCTCTGGTTTTGTTTTTCGTCACGAGATAAAGGGAACCTTCCTGAGGACGTATACTGACGCGGTGTTGAACTATGATGCTGAGGATGAGAAGAGCCTGGTTGTGGACAACGTCCAAAGCAGCctgCGTTGCTGTGGGGTGTACAACTACACCAGCTGGTTGGGCAGTGTGTACTACCCTGCTAACGGCTTTCCCCTGAGCTGCTGCTCCAACTCCTCTGACTGCAACCCACAGGACCTCCGCAACACCACCATAAACCACACCAAAATCaaccagcagGGCTGTTATGAACTGGTCACCTCCTTCCTCGAGATCAACATGGCCATCATTGCAGGAGTGACTTTTGGCATCGCCTTCTCACAGttGATTGGCATGTTGCTGGCATGTTGTCTGTCCAGGATCATTACAGCTAATCAGTATGAGATGGTGTAGCTGGGAGAGCAGggagatgaagaggagagggtgAACAGCATCTTGGTAGACTGGGACAGAAGATCCCCACAACACTAGCACATTGCAtcactaaacccccccccccccccccccctctctcactttctctcactttctctcactttctctcccctctccccctctctctctcacttccccccccccctctctctctctcattattgtAACTTATTGTAAAGAAACACCATTCCTTAATGCTACTGTGCCATGAGCTTCTCTCAGTACCTTAAACTCCTCCACTGAATGACTCTGCTGGTAAAAGTTGCAAGTaagcactgatctaggatcagcttaccctccccAACACAAGATTGACCTTGGACCAGCATCTAGGGGCAACGTCCTCCTACTCCATATGAGCTTAGCAGTCTCTGACACTGTGGAGAAGTTTCCCTGAggcacaggtctaggatcagctcaCCCCACCCTTGATGCTAACTTTAACCATTAAGATAATGAATGAATATCTGACCCTGCATTAGtgctcatcatcctcatcatccttCTCCTTAGTAGTCTTTGACCCCTGTGTCTCCTTGTCCTCTCACACTTCCCCCTTGTGGTCTGGCATGCTCCATATAGGCCCTAGCATCTCCAAAGCGATGCACATATTTGAATAGACATTACATTATTAACCcacataaatatatacagtagccGACATACTGTATTTTCATGATGTTCCTAATCACTGTAAATACCTAAACTTCAGACATTTAGAGAAGATATGTTGATGAAACATTGAGAGAGCATTTAGAGCTAACTTTAGCCTTTCATTTGCATCTTTGTTTTTTTGCTGCTACATGGATGATATCTGACTATTGTGTCCATATCTATGGCATTAGATAACAATGAACTGTGCAATTGATTTGGTCTGTGGATGTGTAAACGTGGCTTACtctggctggtgggaggagctataggaggactggctcattgtaatggctggagtgcAGTTAAACGTGGCTTACtctggctggtgggaggagctataggaggactggctcattgtaatggctggagtgcAGTTAAACGTGGCTTACtctggctggtgggaggagctataggaggactggctcattgtaatggctggagtggagttAAACGTGGCTTACtctggctggtgggaggagctataggaggactggctcattgtaatggctggagtggag

Function

NR:

description
tetraspanin-7-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06571 TSPAN7, TM4SF2, MXS1, CD231; tetraspanin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579927.2 True 2033 mRNA 0.48 8 23607430 23618048

Neighbor

gene id symbol gene type direction distance location
LOC110502029 g12 coding downstream 21957 23583447 ~ 23585473 (-)
si:dkey-100n23.5 LOC106582150 coding downstream 28438 23476938 ~ 23578992 (-)
LOC110501997 LOC106582152 coding downstream 146841 23368423 ~ 23460589 (-)
LOC110502015 renr coding downstream 244024 23354928 ~ 23363406 (-)
LOC110502000 LOC106582153 coding downstream 255709 23333596 ~ 23351721 (-)
LOC110502018 LOC106582148 coding upstream 120558 23738606 ~ 23763120 (-)
LOC110502024 LOC106582147 coding upstream 158016 23776064 ~ 23788613 (-)
appb LOC106582144 coding upstream 185529 23803577 ~ 23835647 (-)
LOC110502014 LOC106582141 coding upstream 315812 23933860 ~ 23938722 (-)
LOC110502070 NA coding upstream 334527 23951016 ~ 24038256 (-)
G1791047 NA non-coding downstream 12092 23595122 ~ 23595338 (-)
G1791013 NA non-coding downstream 39651 23503786 ~ 23567779 (-)
G1791027 NA non-coding downstream 72264 23534589 ~ 23535166 (-)
G1790932 NA non-coding downstream 131420 23474836 ~ 23476010 (-)
G1790934 NA non-coding downstream 132665 23472645 ~ 23474765 (-)
G1791063 NA non-coding upstream 2532 23620580 ~ 23620880 (-)
G1791068 NA non-coding upstream 8662 23626710 ~ 23627228 (-)
G1791081 NA non-coding upstream 34674 23652722 ~ 23653454 (-)
G1791083 NA non-coding upstream 37207 23655255 ~ 23655455 (-)
G1791084 NA non-coding upstream 38223 23656271 ~ 23656499 (-)
G1790280 NA other downstream 438067 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1187932 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 1786485 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3151447 20390516 ~ 20455983 (-)
G1791405 NA other upstream 708681 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 1230543 24848591 ~ 24849752 (-)
G1792345 NA other upstream 1238776 24856824 ~ 24857885 (-)
G1792433 NA other upstream 1367911 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 2092525 25709599 ~ 25744218 (-)

Expression


Co-expression Network