LOC110502018 (LOC106582148)


Basic Information

Item Value
gene id LOC110502018
gene name LOC106582148
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23738606 ~ 23763120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959554.1
TCTCCTCCTTTTCTAAAATCTCTGGTAGATCTATCTTGCGTCTTATGTGCGCAAAGGCCCGACAAATGTGTAAACTCTGATTGGAAGAGCAAGACCGACAAAAGCCCCCACGGTAGCCAATCAACGCACACACCAAACAAATACACTCGAATCAGATTGGACCGTTGTCACTCTTGAGCTGCTGGCAATGCTAAAATAGTCGCATTCTACGAAAGACCTTTGAAATTGGATCACATATCGGTACATCACCACTAGCTTCCTTAATTAACTCAAAGgtgagtcATGTCGTCGGTTTTCTCCAGCACGGACTCTGTGGGCGCCGAGCCCTCCGTCTGCCCCAACGCAGCCAAGCTCAGCAACGCACAAGCCAACGAAGTGGCTGCCATTTTGAAAGGGGGGTCCAAGGTCAACGGAGAAGCCATGTTGAACGGCCACAAGCTCTCCATGAATGGATCTGCTCAAGTGAACGAGGACAGTGCTGGCCATAAGGCTCAGAATGGACGCGTGAACGGGAACGAGGGGGAGAACAATCTAGAGAAGGCAGCCGCAGGCGTGGAGGAGAGGCAGTGGATCCGTCCTGACTTGCCCAGCAAATGCACTTGGAAACTGGGCGGGTCTTCCGTAGAGTCCCCTCACTGCCACTCTGAACTGACTGAAGCTCCCAGCATTCTACCCAACATCCTCGGGAAGATCGGAGACACACCTCTGGTCCGCATGAACAAGATCCCCAAAGCCTTCGGCCTTAAGTGTGAACTCTtggccAAGTGTGAGTTCTTTAACGCAGGGGGCAGTGTGAAGGACCGTATCAGTCTAAGGATGGTGGAGgatgcagagagagatgggatccTCAAACCAGGAGACACCATCATCGAGCCCACCTCTGGCAACACAGGTATTGGTCTGGCCCTGGCCTCTGCAGTTAAAGGCTATCGCTGCATCATCGTCATGCCTGAGAAGATGAGCATGGAGAAGGTGGATGTGCTTAGAGCCTTGGGGGCGGAGATCGTGCGTACCCCAACCGCCGCCCGCTTTGATTCGCCGGAATCCCACGTGGGCGTGGCCTGGCGTCTGAAGAATGAGATTCCCAACTCTCATATCCTGGACCAGTACCGTAACCCTAGCAACCCCCTGGCCCACTACGACACCACTGCCGAGGAGATCCTGGAGCAGTgtgatgGTAAGGTGGACATGTTGGTGGCAGGAGCTGGCACCGGTGGCACCATCACTGGCATCGCCCGCAAGCTGAAGGAGAGATGCCCCAACATCAAGATCGTGGGTGTGGACCCTGAGGGTTCTATACTGGCTGAGCCAGAGGAGCTGAACAAAACAGATAAGACCCAGTACGAGGTGGAGGGCATCGGATACGACTTCATCCCTACTGTACTAGACAGATCTGTAGTTGACAGGTGGTATAAGTCCAATGACGATGAGTCTTTTGCCATGTCACGCATGCTGATCAGGGAGGAGGGGCTTCTCTGCGGAGGTAGTTCAGGTACGGCCATGGCTGCAGCAGTTAGAATGGCCACAGAGCTGAAGGAGGGCCAGCGCTGTGTCGTCATCCTGCCTGACTCCATCCGCAACTACATGTCTAAGTTCCTGAGTGATAACTGGATGTGTGATAAGGGCTTCCTAACCCCAGAAGACCTGATGGTGTCCAAACCCTGGTGGTGGAACCTGAGTCTGCAGGGTCTAAACCTATTTTCCCCCCTCACTGTGCTGCCTTCAGTCAACATCAAGAAGACCATCAAGATCCTCAAGGAGAAGGCCTTCGACCAGGCACCCGTCGTTGACGAGTCCGGCGTGATCCTAGGGATGGTTACCCTGGGCAATATGTTGTCTTCAGTACTGGCTGGGAAGGTCAAGGCCTCTGACCCTGTCGCCAAGGTGCTTTACAAACAATTCAAACAGGTGCGATTGACAGATAACCTGGGTAAGCTGTCCCGTATCCTGGAGACAGATCACTTTGCCCTGGTGGTGCATGAGCAGATCCAATACATGGAAGATGGCTCGCCCTGTCTTAGACAGATGGTATTCGGGGTGGTGACCGCCATTGACATGCTTAATTACATCACCACGCGCGAGCGGCAGGGAAGCACACGCGAGCGCACGCTGTCAGAGTGCTCAATAACGTCAGAGTGCTCGCTGACCGACTAGCTGTGACCACTTCCTGTTTCCTGTGGAGAGGAGGAAGTGACCGCCCACCTGACACCCTCTAAGTAACGACAATGACAATGAagaagatgatgaagatgatgtaGAAATTTAGAAGTGGTGGGGGTTATGGTTTAGTCTTAAAATAAGTCAATATTAATTTCCTCCCTTTTGACTACATTGATTTTGTTATGTCTGTGATGATAATAATTATTCACTGTAGATTATACTGCGATTGAAGCAGCTTAGCTGGTTTCAGATACATGGTTTTCCTCTAACTTTAAGGTATGGaaattgcatgtaacaaacagtgtGCAACTAGACTGCCTTGCCTCTTCATTATTGAAAGTCTTTTACTTTTTTTATCTCCTTAAAAATAATAGTGTTCC

Function

NR:

description
cystathionine beta-synthase-like isoform X1

GO:

id name namespace
GO:0019343 cysteine biosynthetic process via cystathionine biological_process
GO:0006535 cysteine biosynthetic process from serine biological_process
GO:0005737 cytoplasm cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0004122 cystathionine beta-synthase activity molecular_function

KEGG:

id description
K01697 CBS; cystathionine beta-synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959554.1 True 2540 mRNA 0.51 14 23738606 23763120

Neighbor

gene id symbol gene type direction distance location
LOC110502021 LOC106582149 coding downstream 120558 23607430 ~ 23618048 (-)
LOC110502029 g12 coding downstream 153133 23583447 ~ 23585473 (-)
si:dkey-100n23.5 LOC106582150 coding downstream 159614 23476938 ~ 23578992 (-)
LOC110501997 LOC106582152 coding downstream 278017 23368423 ~ 23460589 (-)
LOC110502015 renr coding downstream 375200 23354928 ~ 23363406 (-)
LOC110502024 LOC106582147 coding upstream 12944 23776064 ~ 23788613 (-)
appb LOC106582144 coding upstream 40457 23803577 ~ 23835647 (-)
LOC110502014 LOC106582141 coding upstream 170740 23933860 ~ 23938722 (-)
LOC110502070 NA coding upstream 189455 23951016 ~ 24038256 (-)
LOC110502010 LOC106582139 coding upstream 259267 24022387 ~ 24050582 (-)
G1791104 NA non-coding downstream 60146 23678164 ~ 23678460 (-)
G1791084 NA non-coding downstream 82107 23656271 ~ 23656499 (-)
G1791083 NA non-coding downstream 83151 23655255 ~ 23655455 (-)
G1791081 NA non-coding downstream 85152 23652722 ~ 23653454 (-)
G1791068 NA non-coding downstream 111378 23626710 ~ 23627228 (-)
G1791091 NA non-coding upstream 36870 23799990 ~ 23802042 (-)
G1791155 NA non-coding upstream 59259 23822379 ~ 23840568 (-)
G1791168 NA non-coding upstream 73612 23836732 ~ 23904072 (-)
G1791153 LOC106582143 non-coding upstream 77772 23840892 ~ 23868836 (-)
G1790280 NA other downstream 569243 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1319108 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 1917661 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3282623 20390516 ~ 20455983 (-)
G1791405 NA other upstream 563609 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 1085471 24848591 ~ 24849752 (-)
G1792345 NA other upstream 1093704 24856824 ~ 24857885 (-)
G1792433 NA other upstream 1222839 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 1947453 25709599 ~ 25744218 (-)

Expression


Co-expression Network