LOC110502014 (LOC106582141)


Basic Information

Item Value
gene id LOC110502014
gene name LOC106582141
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23933860 ~ 23938722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579917.2
ATGTCTTTGGAGGACTCCTTAATTTTAAACCCCGATAACATATTGATGTTTAACTTGTCGCGGGCATCCGGTATCGAGACAGGGGTCCAGGAGCCCTACATTTGGCTGCCCGGTATCGTTATCGCCACCGTCTACGGACTTCTAATCATTATTGGAATTATCGGTAACGTCACGCTCATGAGAACGTTTATCGCCGTTAAATCCATGCGGACGGTGCCCAACCTATTAATGTCCAGCCTCGCGCTCGGTGACCTTCTGCTGCTTGTCACGTGCGCTCCGGTGGACGCAAGTCGGTACCTCGCTGAAGAGTGGCTCTTCGGCCGGGTGGGATGCAAACTCATCCCTTTCATCCAACTCACCTCCGTCGGGGTTTCTGTTTTCACACTCACTGCGCTCTCTGTAGATAGGTACAAGGCCATTGTCAAACCCATGGACATTCAGAGGTCCACAGCTAAGATCTCCTTCCGAGCAGCAGCCATCTGGCTGTTCTCCATGACCCTGGCCATTCCTGAGGCAATCTTCTCCGATCTTCACACCTTTAACATCGGCCAGACCAATGACACCTTTGTGACATGTGCCCCCTACCCCAACGCCGGGGAACTGCACCCTAAGATCCACTCCATTGCCTTCTTCCTCATCTTCTACATCATTCCACTCATCATTATCTCTGTGTACTACTGCCTCATCGCATGCAGCCTGATCCGGAGCGCCTCAGACATACCCGTGGAGGCACACTTACATATCCAGAAACAgATTGAGTCTAGGAAACGTCTGGCTAAGACAGTGCTGGTGTTTGTGGTTCTGTTCGCTGTGTGCTGGCTCCCAAGTCACGTGATCTACCTGTACCGCTCCTACCACTACGGCCAGGTGGATACGTCCCTGGGTCACTTCATTGCCAGTGTGTGTGCCCGCGTCCTGGCCTTCATCAACTCCTGCATTAACCCTTTCGCCCTCTACCTGCTCAGCAACAGCTTCCACAAGCAGTTCGACAAGCAGCTCCGCTGCTGCCGCCGCCCACGAATCAGGTGTAACGCTCAGGGCACGAGGCGGACCAACATGCGACTGACTTCGGTCAAGAGCACCAATCACTCACTGGATAACTTCAGCCATGGGGCTCATGTTTGTCAGGAAGGCTGTGTGTAGCGACAATGCTCCAGACTTGTAAATGTCCCATTCCAACACTGACACACTGCTAGCAACATCATTTATGACTGTAACCCATATagtgggactgtgttttatatcccAGTGTTGATATTGAAGCATCATAcatcattctaattctatggttgATATGTTGGTCTATATGCATCCAATGATCCATGATTGATACAAATCCgtgttttattttaaatttagaatgtataatctaaacAGCTGCCACGTATGTAAACCAATGTGGCAGAACTGGACTCTGTCCTCTGGAGATGCAGTTCTATTCTGGTTACTCATTTGAACCAAATTGATCCATGACAACCCAACCAGGTGTAAATGATGAGTTGGTAATGacgagtgagagaaacagacacctacAGTATGAATGTACAGTGCCACCTACAGTGCCAACTGCCAATGTGTACACACTTCGACCCCTAAAGGACAGTTCTGTAGGGATAACTCCAGCTGATGTAAAAGACCAACAACTTTGGTGATTTGATAGATACTGTAGCCGACATTGAAGGATCAATTTCCTCAAGAACAGTTGCCCAGGAGTAGTCACCGCTGCCTCAAAGGCTTGGAAATGTTCTATCTACATACCCATATACATCTCAACACATAGACATATCAGCATTGGTGGAAGAGGAGATGTAAATATCTGTATACAGTTTATTGTACACATCAGAGTACAGTATCTGTTTGGGTCGAATGTTAAAATGGCCAAATACactatttaccattcatttctattgtgCACAACATAATCCGAAACACAAgaaaaacaaactgcaaatgagTGTAAcaagtttgtagtcacaagcttgatgtagttcattgtgtgctaggaatattgGACCAAAGACTAAATGTAATACACTATAAGTGCATTTGCCCAAATACTTATGATACCCTCTAATGGGGGGACTAGAAACacaaagtgctttcatttctaaacagtaaaacagaTATGCATGAAAGTACCCTCAAATAAAAgatgacattctgtactgtcgcctcatataaaatatttgatctaaaatcaaaaatgctggagtatagagccaaattaaaagtttcagcttcactgtccaaataaatatgtaggggAGTATGTGTCCAAGAATAGTTCTATGTTGTCCAAAGTGATACATATGTTTCTCAGTGTTTGATAAACATAAAAAGTAATTCTCTATGGATTAATGGAACATTATGTTGTTGTTTGAGCATTTTCCGTCCTCTCAAATGGCCTAAATTGTTCCTTTATAGAACATGTTTATGTGCTGTCTCGTTCAATGAAAacgtttttattgtgttacaattaAGTGGCTATATTTTTTTGCTGTAAAATTGTTTTTCAATGTATATTATGATGTTTATTGTTGATTAAAGGATTA

Function

NR:

description
gastrin-releasing peptide receptor-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0031989 bombesin receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004946 bombesin receptor activity molecular_function

KEGG:

id description
K04169 GRPR; gastrin-releasing peptide receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579917.2 True 2552 mRNA 0.44 3 23933860 23938722

Neighbor

gene id symbol gene type direction distance location
appb LOC106582144 coding downstream 98213 23803577 ~ 23835647 (-)
LOC110502024 LOC106582147 coding downstream 145247 23776064 ~ 23788613 (-)
LOC110502018 LOC106582148 coding downstream 170740 23738606 ~ 23763120 (-)
LOC110502021 LOC106582149 coding downstream 315812 23607430 ~ 23618048 (-)
LOC110502029 g12 coding downstream 348387 23583447 ~ 23585473 (-)
LOC110502070 NA coding upstream 13853 23951016 ~ 24038256 (-)
LOC110502010 LOC106582139 coding upstream 83665 24022387 ~ 24050582 (-)
LOC110502071 LOC106582043 coding upstream 114540 24053262 ~ 24072305 (-)
LOC110502032 NA coding upstream 143374 24082096 ~ 24085731 (-)
LOC110502019 LOC106582134 coding upstream 199942 24138664 ~ 24141597 (-)
G1791206 NA non-coding downstream 3855 23929722 ~ 23930005 (-)
G1791168 NA non-coding downstream 29788 23836732 ~ 23904072 (-)
G1791153 LOC106582143 non-coding downstream 65024 23840892 ~ 23868836 (-)
G1791155 NA non-coding downstream 93292 23822379 ~ 23840568 (-)
G1791293 NA non-coding upstream 96816 24035538 ~ 24036176 (-)
G1791296 NA non-coding upstream 112578 24051300 ~ 24051562 (-)
G1791297 NA non-coding upstream 112891 24051613 ~ 24051828 (-)
G1791301 NA non-coding upstream 135081 24073803 ~ 24074051 (-)
LOC110501997 LOC106582152 other downstream 473500 23368423 ~ 23460589 (-)
G1790280 NA other downstream 764497 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1514362 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 2112915 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3477877 20390516 ~ 20455983 (-)
G1791405 NA other upstream 388007 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 909869 24848591 ~ 24849752 (-)
G1792345 NA other upstream 918102 24856824 ~ 24857885 (-)
G1792433 NA other upstream 1047237 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 1771851 25709599 ~ 25744218 (-)

Expression


Co-expression Network